BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.472
(1282 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817082.1|CN817082 HRO4528_A08_B16ZS5 Lib AA071E1X Aven... 494 e-139
gb|CN817300.1|CN817300 HRO4464_H04_O08ZS5 Lib AA070E1X Aven... 329 4e-090
gb|BE439126.1|BE439126 CDO202_WHE2C0122F ITEC CDO Oat cDNA ... 238 1e-062
gb|AA231639.1|AA231639 CDO202.F cDNA from oat Avena sativa ... 224 2e-058
gb|AA231908.1|AA231908 CDO202.R cDNA from oat Avena sativa ... 111 2e-024
gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Li... 38 0.019
gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA L... 38 0.019
gb|BE439291.1|BE439291 CDO56_WHE04F09R ITEC CDO Oat cDNA Li... 36 0.075
gb|CN818890.1|CN818890 HRO4473_C05_XXXZS5 Lib AA070E1X Aven... 36 0.075
gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Aven... 36 0.075
gb|CN816452.1|CN816452 HRO4520_H05_P10ZS5 Lib AA071E1X Aven... 34 0.29
gb|CN818791.1|CN818791 HRO4473_A09_B17ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN818920.1|CN818920 HRO4473_A09_XXXZS5 Lib AA070E1X Aven... 34 0.29
gb|CN819892.1|CN819892 HRO4407_D10_H19ZS5 Lib AA069E1X Aven... 34 0.29
gb|CN820237.1|CN820237 HRO4417_A12_A23ZS5 Lib AA069E1X Aven... 34 0.29
gb|CN820284.1|CN820284 HRO4417_F05_K09ZS5 Lib AA069E1X Aven... 34 0.29
>gb|CN817082.1|CN817082 HRO4528_A08_B16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A08_B16, mRNA sequence
Length = 720
Score = 494 bits (249), Expect = e-139
Identities = 474/549 (86%)
Strand = Plus / Minus
Query: 308 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 367
||||||||||||||||||||| |||||||||||| ||||||| || ||||| ||||||||
Sbjct: 559 tatcctcatctctactcctagaacatccttcacagcctcgtacgtgacaaaagcaatggc 500
Query: 368 aattgagggcaccaccttgactgagttcggcacaagacccttgtagagagcaccaactcc 427
|| || ||||||||||| |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 499 gatggaaggcaccaccttcactgagttgggcacaagacccttgtacaaagcaccaaatcc 440
Query: 428 ttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagtgcttcttt 487
||| || |||||||||||||| |||||||| ||||| |||||||||||||| || ||||
Sbjct: 439 ttcgtggcgaacagtcttcctaaatgcatcaatcataccattgtactggagagccgcttt 380
Query: 488 gccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcattcttctcct 547
||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct: 379 gccttctccagtaacaatagaagcagcatgattccaaccaaccatctgcatccttctcct 320
Query: 548 gatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagctccacaccc 607
|| |||||||| |||||||| || ||||| || |||||||| |||||||||||||| ||
Sbjct: 319 gacaacatcaagagggtatgccacggtctgccctatggttccagccacagctccacatcc 260
Query: 608 aagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatttgtctggag 667
||||||||| ||||| |||| ||| || | || |||||| ||||||| |||||| ||||
Sbjct: 259 aagccttgtgactacatgcaactcattattatctgcaagtccaaatgcatttgtacggag 200
Query: 668 tagccagtctttgagggactcatatacagcgaagttgagaccaacatatggaacaactcc 727
| |||||| || || ||||| || ||||| ||||| || |||||||| || ||||||||
Sbjct: 199 gacccagtccttcagagactcgtacacagcaaagttaaggccaacataagggacaactcc 140
Query: 728 gattacagatggaagccaccctttgtatagagcacgaaagccttcttcacggtagactgt 787
|| || ||||||||||||||| |||||| |||||| ||||||||||||||||| |||||
Sbjct: 139 aatcactgatggaagccaccctctgtataaagcacggaagccttcttcacggtacactgt 80
Query: 788 acccagtgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgat 847
|||| |||||| |||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct: 79 gcccaatgcatggaacataccacggtactggtatggagacttatctgtctgaacagtaat 20
Query: 848 ccttcccct 856
||| |||||
Sbjct: 19 cctacccct 11
Score = 48.1 bits (24), Expect = 2e-005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 187 gagagggcctgatgctgaatggagccgcggtc 218
|||||||||| ||||||||||||||| |||||
Sbjct: 694 gagagggccttatgctgaatggagcctcggtc 663
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 267 cctacaaaaatagcagttgaaaacggcca 295
||||||||||||| |||||| ||||||||
Sbjct: 614 cctacaaaaatagaagttgataacggcca 586
>gb|CN817300.1|CN817300 HRO4464_H04_O08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H04_O08, mRNA sequence
Length = 739
Score = 329 bits (166), Expect = 4e-090
Identities = 307/354 (86%)
Strand = Plus / Plus
Query: 308 tatcctcatctctactcctagcacatccttcacaacctcgtaagtcacaaatgcaatggc 367
||||||||||||||||||||| |||||||||||| ||||||| || ||||| ||||||||
Sbjct: 385 tatcctcatctctactcctagaacatccttcacagcctcgtacgtgacaaaagcaatggc 444
Query: 368 aattgagggcaccaccttgactgagttcggcacaagacccttgtagagagcaccaactcc 427
|| || ||||||||||| |||||||| ||||||||||||||||| | |||||||| |||
Sbjct: 445 gatggaaggcaccaccttcactgagttgggcacaagacccttgtacaaagcaccaaatcc 504
Query: 428 ttcatgacgaacagtcttcctgaatgcatcgatcatgccattgtactggagtgcttcttt 487
||| || |||||||||||||| |||||||| ||||| |||||||||||||| || ||||
Sbjct: 505 ttcgtggcgaacagtcttcctaaatgcatcaatcataccattgtactggagagccgcttt 564
Query: 488 gccttgcccagtaacaatagagtcagcatggctccaaccaaccatctgcattcttctcct 547
||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct: 565 gccttctccagtaacaatagaagcagcatgattccaaccaaccatctgcatccttctcct 624
Query: 548 gatgacatcaagcgggtatgcaacagtctggccaatggttcccgccacagctccacaccc 607
|| |||||||| |||||||| || ||||| || |||||||| |||||||||||||| ||
Sbjct: 625 gacaacatcaagagggtatgccacggtctgccctatggttccagccacagctccacatcc 684
Query: 608 aagccttgtaactacgtgcagctcgttgtcatttgcaaggccaaatgaatttgt 661
||||||||| ||||| |||| ||| || | || |||||| |||||| ||||||
Sbjct: 685 aagccttgtgactacatgcaactcattattatctgcaagttcaaatgcatttgt 738
Score = 48.1 bits (24), Expect = 2e-005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 187 gagagggcctgatgctgaatggagccgcggtc 218
|||||||||| ||||||||||||||| |||||
Sbjct: 249 gagagggccttatgctgaatggagcctcggtc 280
Score = 48.1 bits (24), Expect = 2e-005
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 102 tgagttaggcagatgcttaataagctttacagccgacttatta 144
||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct: 142 tgagttaggcaaatgcttaat--gctttacagccaacttatta 182
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 267 cctacaaaaatagcagttgaaaacggcca 295
||||||||||||| |||||| ||||||||
Sbjct: 330 cctacaaaaatagaagttgataacggcca 358
>gb|BE439126.1|BE439126 CDO202_WHE2C0122F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO202_WHE2C0122, mRNA sequence
Length = 304
Score = 238 bits (120), Expect = 1e-062
Identities = 258/304 (84%)
Strand = Plus / Plus
Query: 400 caagacccttgtagagagcaccaactccttcatgacgaacagtcttcctgaatgcatcga 459
||||||||||||| | |||||||| |||||| || |||||||||||||| |||||||| |
Sbjct: 1 caagacccttgtacaaagcaccaaatccttcgtggcgaacagtcttcctaaatgcatcaa 60
Query: 460 tcatgccattgtactggagtgcttctttgccttgcccagtaacaatagagtcagcatggc 519
|||| |||||||||||||| || ||||||||| |||||||||||||| |||||||
Sbjct: 61 tcataccattgtactggagagccgctttgccttctccagtaacaatagaagcagcatgat 120
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
||||||||||||||||||| |||||||||| |||||||| |||||||| || ||||| |
Sbjct: 121 tccaaccaaccatctgcatccttctcctgacaacatcaagagggtatgccacggtctgcc 180
Query: 580 caatggttcccgccacagctccacacccaagccttgtaactacgtgcagctcgttgtcat 639
| |||||||| |||||||||||||| ||||||||||| ||||| |||| ||| || | ||
Sbjct: 181 ctatggttccagccacagctccacatccaagccttgtgactacatgcaactcattattat 240
Query: 640 ttgcaaggccaaatgaatttgtctggagtagccagtctttgagggactcatatacagcga 699
|||||| ||||||| |||||| |||| | |||||| || || ||||| || ||||| |
Sbjct: 241 ctgcaagtccaaatgcatttgtacggaggacccagtccttcagagactcgtacacagcaa 300
Query: 700 agtt 703
||||
Sbjct: 301 agtt 304
>gb|AA231639.1|AA231639 CDO202.F cDNA from oat Avena sativa cDNA clone CDO202, mRNA
sequence
Length = 317
Score = 224 bits (113), Expect = 2e-058
Identities = 239/281 (85%)
Strand = Plus / Plus
Query: 381 accttgactgagttcggcacaagacccttgtagagagcaccaactccttcatgacgaaca 440
||||| |||||||| ||||||||| ||||||| | |||||||| |||||| || ||||
Sbjct: 11 accttcactgagttgggcacaagaaccttgtacaaagcaccaaatccttcgtgggaaaca 70
Query: 441 gtcttcctgaatgcatcgatcatgccattgtactggagtgcttctttgccttgcccagta 500
|||||||| |||||||| ||||| ||||||| |||||| || ||||||||| ||||||
Sbjct: 71 gtcttcctaaatgcatcaatcataccattgttctggagagccgctttgccttctccagta 130
Query: 501 acaatagagtcagcatggctccaaccaaccatctgcattcttctcctgatgacatcaagc 560
|||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 131 acaatagaagcagcatgattccaaccaaccatctgcatccttctcctgacaacatcaaga 190
Query: 561 gggtatgcaacagtctggccaatggttcccgccacagctccacacccaagccttgtaact 620
|||||||| || ||||| || |||||||| |||||||||||||| ||||||||||| |||
Sbjct: 191 gggtatgccacggtctgccctatggttccagccacagctccacatccaagccttgtgact 250
Query: 621 acgtgcagctcgttgtcatttgcaaggccaaatgaatttgt 661
|| |||| ||| || | || |||||| ||||||| ||||||
Sbjct: 251 acatgcaactcattattatctgcaagtccaaatgcatttgt 291
>gb|AA231908.1|AA231908 CDO202.R cDNA from oat Avena sativa cDNA clone CDO202, mRNA sequence
Length = 178
Score = 111 bits (56), Expect = 2e-024
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 999 tcgtagctaaaaaacttcacggcagaatttggaacaatccttgcacaattggtaccattg 1058
|||||||| || || ||||| ||||||||||| |||||||| |||||||| || ||||||
Sbjct: 128 tcgtagctgaagaatttcacagcagaatttgggacaatcctagcacaattagtcccattg 69
Query: 1059 cccttgaaaagtccacggaggccctctgttctccagatatacttgagaccctgaacagta 1118
||||| || |||||||| ||||| || |||||||| |||||||| || || ||||| |||
Sbjct: 68 cccttaaagagtccacgaaggccttcggttctccatatatacttcagcccttgaactgta 9
Query: 1119 ccattgta 1126
||||||||
Sbjct: 8 ccattgta 1
>gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO58_WHE04, mRNA sequence
Length = 220
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgc 1278
|||||||||||||||||||
Sbjct: 19 cctcgtgccgaattcctgc 1
>gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO506_WHE04G12, mRNA sequence
Length = 167
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1261 ctcgtgccgaattcctgca 1279
|||||||||||||||||||
Sbjct: 19 ctcgtgccgaattcctgca 1
>gb|BE439291.1|BE439291 CDO56_WHE04F09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO56_WHE04, mRNA sequence
Length = 190
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcct 1276
||||||||||||||||||
Sbjct: 18 ccctcgtgccgaattcct 1
>gb|CN818890.1|CN818890 HRO4473_C05_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C05_XXX, mRNA sequence
Length = 726
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1257 ccccctcgtgccgaattc 1274
||||||||||||||||||
Sbjct: 696 ccccctcgtgccgaattc 679
>gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D10_G20, mRNA
sequence
Length = 766
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1258 cccctcgtgccgaattcc 1275
||||||||||||||||||
Sbjct: 25 cccctcgtgccgaattcc 8
>gb|CN816452.1|CN816452 HRO4520_H05_P10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_H05_P10, mRNA sequence
Length = 832
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1258 cccctcgtgccgaattc 1274
|||||||||||||||||
Sbjct: 422 cccctcgtgccgaattc 406
>gb|CN818791.1|CN818791 HRO4473_A09_B17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A09_B17, mRNA sequence
Length = 434
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1258 cccctcgtgccgaattc 1274
|||||||||||||||||
Sbjct: 358 cccctcgtgccgaattc 374
>gb|CN818920.1|CN818920 HRO4473_A09_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A09_XXX, mRNA sequence
Length = 801
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1258 cccctcgtgccgaattc 1274
|||||||||||||||||
Sbjct: 558 cccctcgtgccgaattc 574
>gb|CN819892.1|CN819892 HRO4407_D10_H19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_D10_H19, mRNA
sequence
Length = 685
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcc 1275
|||||||||||||||||
Sbjct: 20 ccctcgtgccgaattcc 4
>gb|CN820237.1|CN820237 HRO4417_A12_A23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_A12_A23, mRNA
sequence
Length = 837
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1258 cccctcgtgccgaattc 1274
|||||||||||||||||
Sbjct: 636 cccctcgtgccgaattc 620
>gb|CN820284.1|CN820284 HRO4417_F05_K09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_F05_K09, mRNA
sequence
Length = 732
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1254 tggccccctcgtgccgaattc 1274
|||| ||||||||||||||||
Sbjct: 641 tggcaccctcgtgccgaattc 621
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5413
Number of Sequences: 8143
Number of extensions: 5413
Number of successful extensions: 2092
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 34
length of query: 1282
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1266
effective length of database: 4,572,175
effective search space: 5788373550
effective search space used: 5788373550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)