BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.467
(758 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818898.1|CN818898 HRO4473_B10_XXXZS5 Lib AA070E1X Aven... 428 e-120
gb|CN815124.1|CN815124 HRO4506_B06_C12ZS5 Lib AA071E1X Aven... 149 4e-036
gb|CN816629.1|CN816629 HRO4523_A05_B09ZS5 Lib AA071E1X Aven... 115 6e-026
gb|CN816025.1|CN816025 HRO4516_A11_B22ZS5 Lib AA071E1X Aven... 109 4e-024
gb|CN815400.1|CN815400 HRO4509_C03_E05ZS5 Lib AA071E1X Aven... 107 1e-023
gb|CN815715.1|CN815715 HRO4514_G02_M04ZS5 Lib AA071E1X Aven... 82 8e-016
>gb|CN818898.1|CN818898 HRO4473_B10_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_B10_XXX, mRNA sequence
Length = 683
Score = 428 bits (216), Expect = e-120
Identities = 354/400 (88%)
Strand = Plus / Plus
Query: 87 cgatggcccgcacgaagcagacggcgaggaagtccactggcggcaaggcgccaaggaagc 146
|||||||||| || |||||||| || | |||||||| || |||||||| || |||||||
Sbjct: 58 cgatggcccgtaccaagcagaccgcccgcaagtccaccggaggcaaggcccccaggaagc 117
Query: 147 agctggccaccaaggcggcgcgcaagtctgccccggcgaccggcggagtgaagaagcccc 206
|||| || |||||||| ||| | |||||||| || | |||||||| |||||||||||||
Sbjct: 118 agctcgcaaccaaggctgcgaggaagtctgctcccaccaccggcggcgtgaagaagcccc 177
Query: 207 accgtttccgccccggcaccgtcgcgctccgggagatccgcaagtaccagaagagcacgg 266
|||| | | | |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 178 accgctacaggcccggcacggtggcgctccgcgagatccgcaagtaccagaagagcacgg 237
Query: 267 agctgctgatccgcaagctgccgttccagcgcctggtgcgtgagatcgcccaggacttca 326
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 238 agctgctgatccgcaagctgcccttccagcgcctggtccgcgagatcgcccaggacttca 297
Query: 327 agaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggcgtccgaggcct 386
||||||||||||||||||||||| |||||| ||||| |||||||| | ||||| |
Sbjct: 298 agaccgacctccgcttccagagccacgccgtgctggcgctccaggaggccgcggaggcgt 357
Query: 387 acctcgtcgggctcttcgaggacaccaacctctgcgccattcacgccaagcgcgtcacca 446
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 358 acctcgtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcacca 417
Query: 447 tcatgcccaaggacatccagctcgcccgccgtatccgtgg 486
||||||||||||||||||||||||||||||| || |||||
Sbjct: 418 tcatgcccaaggacatccagctcgcccgccgcattcgtgg 457
>gb|CN815124.1|CN815124 HRO4506_B06_C12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B06_C12, mRNA sequence
Length = 362
Score = 149 bits (75), Expect = 4e-036
Identities = 93/99 (93%)
Strand = Plus / Plus
Query: 403 cgaggacaccaacctctgcgccattcacgccaagcgcgtcaccatcatgcccaaggacat 462
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10 cgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggacat 69
Query: 463 ccagctcgcccgccgtatccgtggggagagggcctaggc 501
||||||||||||||| ||||| |||||| | ||||||||
Sbjct: 70 ccagctcgcccgccgcatccgcggggagcgcgcctaggc 108
>gb|CN816629.1|CN816629 HRO4523_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A05_B09, mRNA sequence
Length = 550
Score = 115 bits (58), Expect = 6e-026
Identities = 187/230 (81%)
Strand = Plus / Plus
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||||||||||||||||||||| |||||||| || | ||||| || |||||| |
Sbjct: 36 gagatccgcaagtaccagaagagcactgagctgctcataaggaagctcccattccagagg 95
Query: 299 ctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtc 358
|| || | ||||| |||||||| |||||||| || || || ||||||||| ||| ||
Sbjct: 96 cttgttagggagattgcccaggatttcaagactgatctgcgtttccagagccacgcagtg 155
Query: 359 gccgcgctgcaggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctc 418
|| || |||||||| | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 156 cttgctcttcaggaggctgcagaggcgtacctggtgggtctctttgaggacaccaacctg 215
Query: 419 tgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatccagct 468
|||||||| || |||||| | || |||||||||||||||||||| |||||
Sbjct: 216 tgcgccatccatgccaagagggtgaccatcatgcccaaggacattcagct 265
>gb|CN816025.1|CN816025 HRO4516_A11_B22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A11_B22, mRNA sequence
Length = 229
Score = 109 bits (55), Expect = 4e-024
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 433 caagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgtatccgtggggagag 492
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 11 caagcgcgtcaccttcatgcccaaggacatccagctcgcccgccgcatccgtggcgagag 70
Query: 493 ggcctag 499
|||||||
Sbjct: 71 ggcctag 77
>gb|CN815400.1|CN815400 HRO4509_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C03_E05, mRNA sequence
Length = 516
Score = 107 bits (54), Expect = 1e-023
Identities = 186/230 (80%)
Strand = Plus / Plus
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||||||||||||||||||||| |||||||| || | ||||| || |||||| |
Sbjct: 27 gagatccgcaagtaccagaagagcactgagctgctcataaggaagctcccattccagagg 86
Query: 299 ctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtc 358
|| || | ||||| |||||||| |||||||| || || || ||||||||| || ||
Sbjct: 87 cttgttagggagattgcccaggatttcaagactgatctgcgtttccagagccatgcagtg 146
Query: 359 gccgcgctgcaggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctc 418
|| || |||||||| | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 147 cttgctcttcaggaggctgcagaggcgtacctggtgggtctctttgaggacaccaacctg 206
Query: 419 tgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatccagct 468
|||||||| || |||||| | || |||||||||||||||||||| |||||
Sbjct: 207 tgcgccatccatgccaagagggtgaccatcatgcccaaggacattcagct 256
>gb|CN815715.1|CN815715 HRO4514_G02_M04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G02_M04, mRNA sequence
Length = 682
Score = 81.8 bits (41), Expect = 8e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 380 gaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccattcacgccaagcgc 439
||||| ||||| || || ||||| |||||||||||||| |||||||| || |||||| |
Sbjct: 72 gaggcgtacctggtgggtctctttgaggacaccaacctgtgcgccatccatgccaagagg 131
Query: 440 gtcaccatcatgcccaaggacatccagct 468
|| |||||||||||||||||||| |||||
Sbjct: 132 gtgaccatcatgcccaaggacattcagct 160
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1550
Number of Sequences: 8143
Number of extensions: 1550
Number of successful extensions: 471
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 10
length of query: 758
length of database: 4,702,463
effective HSP length: 16
effective length of query: 742
effective length of database: 4,572,175
effective search space: 3392553850
effective search space used: 3392553850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)