BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.452
(1348 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815766.1|CN815766 HRO4510_C06_E12ZS5 Lib AA071E1X Aven... 36 0.078
gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Aven... 30 4.8
gb|CN816554.1|CN816554 HRO4522_A12_A24ZS5 Lib AA071E1X Aven... 30 4.8
gb|CN816789.1|CN816789 HRO4524_G08_N16ZS5 Lib AA071E1X Aven... 30 4.8
gb|CN818526.1|CN818526 HRO4457_H11_P21ZS5 Lib AA070E1X Aven... 30 4.8
gb|CN819302.1|CN819302 HRO4452_D07_G14ZS5 Lib AA070E1X Aven... 30 4.8
gb|CN819369.1|CN819369 HRO4405_B08_C15ZS5 Lib AA069E1X Aven... 30 4.8
gb|CN820056.1|CN820056 HRO4410_F03_K06ZS5 Lib AA069E1X Aven... 30 4.8
gb|CN820058.1|CN820058 HRO4410_F05_K10ZS5 Lib AA069E1X Aven... 30 4.8
gb|CN820291.1|CN820291 HRO4417_G01_M01ZS5 Lib AA069E1X Aven... 30 4.8
gb|CN820320.1|CN820320 HRO4418_A08_A16ZS5 Lib AA069E1X Aven... 30 4.8
gb|CN820591.1|CN820591 HRO4415_B12_D23ZS5 Lib AA069E1X Aven... 30 4.8
>gb|CN815766.1|CN815766 HRO4510_C06_E12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C06_E12, mRNA sequence
Length = 873
Score = 36.2 bits (18), Expect = 0.078
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 724 cgatgtctacagcttcggcgtggtgcttctggagctca 761
|||||||||||| ||||| ||||| || |||||||||
Sbjct: 269 cgatgtctacagtttcggagtggtcctgttggagctca 306
>gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_A04_B07, mRNA sequence
Length = 747
Score = 34.2 bits (17), Expect = 0.31
Identities = 32/37 (86%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagct 759
||||||| ||||| ||||| || || |||||||||||
Sbjct: 221 gcgatgtgtacagtttcggagttgttcttctggagct 257
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D01_H01, mRNA sequence
Length = 653
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 392 ctagtcttcgagttt 406
|||||||||||||||
Sbjct: 17 ctagtcttcgagttt 31
>gb|CN816554.1|CN816554 HRO4522_A12_A24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_A12_A24, mRNA sequence
Length = 282
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1235 agcaatgtctatctg 1249
|||||||||||||||
Sbjct: 144 agcaatgtctatctg 158
>gb|CN816789.1|CN816789 HRO4524_G08_N16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G08_N16, mRNA sequence
Length = 812
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1295 tttgatgtatgtcca 1309
|||||||||||||||
Sbjct: 62 tttgatgtatgtcca 76
>gb|CN818526.1|CN818526 HRO4457_H11_P21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_H11_P21, mRNA sequence
Length = 473
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 attatatatgaagac 702
|||||||||||||||
Sbjct: 374 attatatatgaagac 388
>gb|CN819302.1|CN819302 HRO4452_D07_G14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_D07_G14, mRNA sequence
Length = 712
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1292 taatttgatgtatgt 1306
|||||||||||||||
Sbjct: 194 taatttgatgtatgt 180
>gb|CN819369.1|CN819369 HRO4405_B08_C15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_B08_C15, mRNA
sequence
Length = 709
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 gggagctgaagaaga 101
|||||||||||||||
Sbjct: 274 gggagctgaagaaga 288
>gb|CN820056.1|CN820056 HRO4410_F03_K06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_F03_K06, mRNA
sequence
Length = 812
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 attatatatgaagac 702
|||||||||||||||
Sbjct: 720 attatatatgaagac 734
>gb|CN820058.1|CN820058 HRO4410_F05_K10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_F05_K10, mRNA
sequence
Length = 863
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 809 aagatcctccccatcgagt 827
||||||||||| |||||||
Sbjct: 554 aagatcctcccaatcgagt 536
>gb|CN820291.1|CN820291 HRO4417_G01_M01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_G01_M01, mRNA
sequence
Length = 436
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 516 acatgcactcccttg 530
|||||||||||||||
Sbjct: 97 acatgcactcccttg 83
>gb|CN820320.1|CN820320 HRO4418_A08_A16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_A08_A16, mRNA
sequence
Length = 723
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 936 tgattggcatgttgg 950
|||||||||||||||
Sbjct: 304 tgattggcatgttgg 318
>gb|CN820591.1|CN820591 HRO4415_B12_D23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_B12_D23, mRNA
sequence
Length = 834
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 694 tatgaagaccgagca 708
|||||||||||||||
Sbjct: 689 tatgaagaccgagca 703
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3612
Number of Sequences: 8143
Number of extensions: 3612
Number of successful extensions: 1087
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 15
length of query: 1348
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1332
effective length of database: 4,572,175
effective search space: 6090137100
effective search space used: 6090137100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)