BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.426
(1721 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Aven... 521 e-148
gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Aven... 127 4e-029
gb|AI978372.1|AI978372 CDO507.R Oat Etiolated Leaf cDNA Lib... 86 1e-016
gb|AA231704.1|AA231704 CDO507.R cDNA from oat Avena sativa ... 80 7e-015
gb|BE439264.1|BE439264 CDO507_WHE04H01F ITEC CDO Oat cDNA L... 46 1e-004
gb|BE439279.1|BE439279 CDO507_WHE04B09F ITEC CDO Oat cDNA L... 46 1e-004
gb|AA231844.1|AA231844 CDO507.F cDNA from oat Avena sativa ... 40 0.006
gb|BE439290.1|BE439290 CDO507_WHE04B09R ITEC CDO Oat cDNA L... 38 0.025
gb|CN821607.1|CN821607 HRO4408_C01_F02ZS5 Lib AA069E1X Aven... 36 0.10
gb|AI978371.1|AI978371 CDO507.F Oat Etiolated Leaf cDNA Lib... 34 0.40
gb|CN814727.1|CN814727 HRO4501_H01_O01ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN817033.1|CN817033 HRO4527_E05_J09ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN819386.1|CN819386 HRO4405_D05_G09ZS5 Lib AA069E1X Aven... 34 0.40
>gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_D04_H07, mRNA sequence
Length = 654
Score = 521 bits (263), Expect = e-148
Identities = 466/531 (87%), Gaps = 2/531 (0%)
Strand = Plus / Minus
Query: 434 ttgttcgtcatcatttttctccatt-taagcaccgccggagccgtacttctttccgaaga 492
|||||||||||||||| | |||| | || |||||||| |||||||||||||| |||||||
Sbjct: 533 ttgttcgtcatcatttct-tccactctaggcaccgcctgagccgtacttcttgccgaaga 475
Query: 493 agaggatctggagctggtcgtagccagaaagcacaccagcgccagcaatggcacgaagaa 552
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct: 474 agaggatctgaagctggtcatagccagaaagcacaccagcaccagcaatggcacggagga 415
Query: 553 tgttagcaccagcacccttgaacagggacttggggccttccttcttaaggatctgctgga 612
|||| ||||||||||||||||| |||||||| | || |||||||| |||||||||||||
Sbjct: 414 tgttggcaccagcacccttgaagagggacttagcaccctccttcttcaggatctgctgga 355
Query: 613 atgcgtccaatgagctcttgtacttgacagcctcaccagaagtcatcatcatccttctgc 672
| || || |||||||||||||||||||| || || ||||| |||||||||||||||||||
Sbjct: 354 aagcatcgaatgagctcttgtacttgacggcttctccagaggtcatcatcatccttctgc 295
Query: 673 ggacagtatcaatggggtaagatgcaagaccagcaccgttggtgatcagccaacccagag 732
|||| || ||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 294 ggacggtgtcaatggggtaagatgcaagacctgcaccgttggtgatcaaccaaccaagag 235
Query: 733 caaaactggcaaagaagttgtcctggaggctgccagtgaggacaactggcttgatagaat 792
|||| ||||||||||||||||||||||| |||||||||||| ||||||||| | |||||
Sbjct: 234 caaagctggcaaagaagttgtcctggagagtgccagtgaggagaactggcttcagagaat 175
Query: 793 cgtaaagtccgaaatacaggccacgataaacaataattccaacacaagatatgttaaatc 852
| || | ||| || ||||| ||||| || ||||| ||||||||||| || ||||| ||||
Sbjct: 174 catacaatccaaagtacagaccacggtagacaatgattccaacacaggagatgttgaatc 115
Query: 853 cacggtaaagcccagcaataccatcagatttgagtgtcttgcggtagacatccacaagac 912
||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||| |
Sbjct: 114 cacggtaaagcccagcaataccatctgtcttgagagtcttgcggtagacatcaacaaggc 55
Query: 913 cattgaattgtctatcgcctcctcccttggcagccttggcatcattggcca 963
||||||| || || || ||||| ||||| | ||||| || ||||||||||
Sbjct: 54 cattgaactgcctctcacctccacccttagatgccttagcgtcattggcca 4
>gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_F04_L07, mRNA sequence
Length = 435
Score = 127 bits (64), Expect = 4e-029
Identities = 102/112 (91%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 434 ttgttcgtcatcatttttctccatt-taagcaccgccggagccgtacttctttccgaaga 492
|||||||||||||||| | |||| | || |||||||| |||||||||||||| |||||||
Sbjct: 120 ttgttcgtcatcatttct-tccactctaggcaccgcctgagccgtacttcttgccgaaga 62
Query: 493 agaggatctggagctggtcgtagccagaaagcacaccagcgccagcaatggc 544
|||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 61 agaggatctgaagctggtcatagccagaaagcacaccagcaccagcaatggc 10
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 365 caatgtatggaaggaaaattgcccg 341
>gb|AI978372.1|AI978372 CDO507.R Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO507, mRNA sequence
Length = 394
Score = 85.7 bits (43), Expect = 1e-016
Identities = 133/163 (81%)
Strand = Plus / Minus
Query: 1459 aaaggctctgggtcatgtagttcctcgtggcaaatctcctttcataagatgagaaagaag 1518
|||||||||| ||||||||| | || |||| || | ||| ||||| | ||| | |||||
Sbjct: 279 aaaggctctgagtcatgtagctgcttgtggtgaagcgcctatcataggctgacacagaag 220
Query: 1519 ggcagatgttacgggcccgtacaccttcagagaagctggagctcaggtggaactggccac 1578
|||| ||||| ||||| || ||| || ||||||||||||||| ||||||||||| ||||
Sbjct: 219 ggcacatgttgcgggcacggacaactccagagaagctggagccaaggtggaactgtccac 160
Query: 1579 ctagcttatgaaggacagtgggttggttagcctggtccgccat 1621
| | ||| |||| |||| |||||||| ||||||||||||||
Sbjct: 159 cgaacttctgaacaacagacggttggttggcctggtccgccat 117
>gb|AA231704.1|AA231704 CDO507.R cDNA from oat Avena sativa cDNA clone CDO507, mRNA sequence
Length = 271
Score = 79.8 bits (40), Expect = 7e-015
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 1514 agaagggcagatgttacgggcccgtacaccttcagagaagctggagctcaggtggaactg 1573
||||||||| ||||| ||||| || ||| || ||||||||||||||| |||||||||||
Sbjct: 224 agaagggcacatgttgcgggcacggacaactccagagaagctggagccaaggtggaactg 165
Query: 1574 gccacctagcttatgaaggacagtgggttggttagcctggtccgccat 1621
||||| | ||| |||| |||| |||||||| ||||||||||||||
Sbjct: 164 tccaccgaacttctgaacaacagacggttggttggcctggtccgccat 117
>gb|BE439264.1|BE439264 CDO507_WHE04H01F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04H01, mRNA sequence
Length = 339
Score = 46.1 bits (23), Expect = 1e-004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 395 accagatcctgactgggctggaccgggagcgaactgctcttgttcgtcatcattt 449
|||||||||||| |||| |||| |||| | ||| |||||||||||||||||||
Sbjct: 274 accagatcctgaaagggcaggactgggaacagacttctcttgttcgtcatcattt 328
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 69 caatgtatggaaggaaaattgcccg 93
>gb|BE439279.1|BE439279 CDO507_WHE04B09F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04B09, mRNA sequence
Length = 364
Score = 46.1 bits (23), Expect = 1e-004
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 395 accagatcctgactgggctggaccgggagcgaactgctcttgttcgtcatcattt 449
|||||||||||| |||| |||| |||| | ||| |||||||||||||||||||
Sbjct: 274 accagatcctgaaagggcaggactgggaacagacttctcttgttcgtcatcattt 328
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 69 caatgtatggaaggaaaattgcccg 93
>gb|AA231844.1|AA231844 CDO507.F cDNA from oat Avena sativa cDNA clone CDO507, mRNA
sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.006
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 395 accagatcctgactgggctggaccgggagcgaactgctcttgttcgtcatcattt 449
|||| ||||||| |||| |||| |||| | ||| |||||||||||||||||||
Sbjct: 256 accacatcctgaaagggcaggactgggaacanacttctcttgttcgtcatcattt 310
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 51 caatgtatggaaggaaaattgcccg 75
>gb|BE439290.1|BE439290 CDO507_WHE04B09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04B09, mRNA sequence
Length = 167
Score = 38.2 bits (19), Expect = 0.025
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1599 ggttggttagcctggtccgccat 1621
|||||||| ||||||||||||||
Sbjct: 153 ggttggttggcctggtccgccat 131
>gb|CN821607.1|CN821607 HRO4408_C01_F02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_C01_F02, mRNA
sequence
Length = 680
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 117 tatcacaatcaagcaaag 134
||||||||||||||||||
Sbjct: 307 tatcacaatcaagcaaag 290
>gb|AI978371.1|AI978371 CDO507.F Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO507, mRNA sequence
Length = 318
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 267 caatgtatggaaggaaaattgcccg 243
>gb|CN814727.1|CN814727 HRO4501_H01_O01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H01_O01, mRNA sequence
Length = 506
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 388 aaacttgaccagatcct 404
|||||||||||||||||
Sbjct: 202 aaacttgaccagatcct 218
>gb|CN817033.1|CN817033 HRO4527_E05_J09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_E05_J09, mRNA sequence
Length = 743
Score = 34.2 bits (17), Expect = 0.40
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 432 tcttgttcgtcatcatttttc 452
|||| ||||||||||||||||
Sbjct: 234 tcttcttcgtcatcatttttc 214
>gb|CN819386.1|CN819386 HRO4405_D05_G09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_D05_G09, mRNA
sequence
Length = 410
Score = 34.2 bits (17), Expect = 0.40
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 196 caatatatgtaaggaaaattgcccg 220
|||| |||| |||||||||||||||
Sbjct: 278 caatgtatggaaggaaaattgcccg 254
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4887
Number of Sequences: 8143
Number of extensions: 4887
Number of successful extensions: 1396
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 28
length of query: 1721
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1704
effective length of database: 4,564,032
effective search space: 7777110528
effective search space used: 7777110528
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)