BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 305 3e-083
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 305 3e-083
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 305 3e-083
gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Aven... 297 7e-081
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 297 7e-081
gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Aven... 276 3e-074
gb|CN815879.1|CN815879 HRO4511_E04_J07ZS5 Lib AA071E1X Aven... 192 3e-049
gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Aven... 170 1e-042
gb|CN817141.1|CN817141 HRO4528_F11_L22ZS5 Lib AA071E1X Aven... 145 6e-035
gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Aven... 143 2e-034
gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Aven... 137 2e-032
gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Aven... 62 7e-010
gb|CN815188.1|CN815188 HRO4506_H03_O06ZS5 Lib AA071E1X Aven... 40 0.003
gb|CN815249.1|CN815249 HRO4507_E10_J19ZS5 Lib AA071E1X Aven... 38 0.011
gb|CN815371.1|CN815371 HRO4508_H10_P20ZS5 Lib AA071E1X Aven... 38 0.011
gb|CN820541.1|CN820541 HRO4413_E10_I19ZS5 Lib AA069E1X Aven... 38 0.011
gb|CN820763.1|CN820763 HRO4414_E02_I04ZS5 Lib AA069E1X Aven... 38 0.011
gb|CN816475.1|CN816475 HRO4521_B09_C17ZS5 Lib AA071E1X Aven... 34 0.17
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 305 bits (154), Expect = 3e-083
Identities = 247/278 (88%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 287 caaaagaaaatgaagaaccctaactatcagggtaaatggaaggcacatatgattgccaac 346
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 347 ccagatttcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaatt 406
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| ||
Sbjct: 407 gagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgct 466
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
|| ||||||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||
Sbjct: 467 gccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggct 526
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||| || ||||||||||||||||||||||| |||||
Sbjct: 527 gcttttgacgaggctgagaaaaagaaggaagaggagga 564
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 305 bits (154), Expect = 3e-083
Identities = 247/278 (88%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 66 caaaagaaaatgaagaaccctaactatcagggtaaatggaaggcacatatgattgccaac 125
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 126 ccagatttcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaatt 185
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| ||
Sbjct: 186 gagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgct 245
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
|| ||||||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||
Sbjct: 246 gccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggct 305
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||| || ||||||||||||||||||||||| |||||
Sbjct: 306 gcttttgacgaggctgagaaaaagaaggaagaggagga 343
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 305 bits (154), Expect = 3e-083
Identities = 247/278 (88%)
Strand = Plus / Minus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 586 caaaagaaaatgaagaaccctaactatcagggtaaatggaaggcacatatgattgccaac 527
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 526 ccagatttcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaatt 467
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| ||
Sbjct: 466 gagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgct 407
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
|| ||||||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||
Sbjct: 406 gccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggct 347
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||| || ||||||||||||||||||||||| |||||
Sbjct: 346 gcttttgacgaggctgagaaaaagaaggaagaggagga 309
>gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F11_K22, mRNA sequence
Length = 753
Score = 297 bits (150), Expect = 7e-081
Identities = 246/278 (88%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 219 caaaagaaaatgaagaaccctaactatcagggtaaatggaaggcacatatgattgccaac 278
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 279 ccagatttcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaatt 338
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| ||
Sbjct: 339 gagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgct 398
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
|| ||||||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||
Sbjct: 399 gccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggct 458
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||| || |||||||||||||||||| |||| |||||
Sbjct: 459 gcttttgacgaggctgagaaaaagaagcaagaggagga 496
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 297 bits (150), Expect = 7e-081
Identities = 246/278 (88%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct: 365 caaaagaaaatgaagaaccctaactatcagggtaaatggaaggcacatatgattgccaac 424
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 425 ccagatttcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaatt 484
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||||||||||||||||| || || ||||||||||||||||| |||||||||| ||| ||
Sbjct: 485 gagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgct 544
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| ||||||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||
Sbjct: 545 cccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggct 604
Query: 246 gctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||| || ||||||||||||||||||||||| |||||
Sbjct: 605 gcttttgacgaggctgagaaaaagaaggaagaggagga 642
>gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C08_F16, mRNA sequence
Length = 598
Score = 276 bits (139), Expect = 3e-074
Identities = 238/271 (87%)
Strand = Plus / Plus
Query: 13 aaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaacccagatt 72
|||| ||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 14 aaatgaagtaccctaactatcagggtaaatggaaggcacatatgattgccaacccagatt 73
Query: 73 tcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcattgagctgt 132
||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 74 tcaaggatgatccttacatctatgcttttgacagcctgaagtacattggaattgagctgt 133
Query: 133 ggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcctgcgttgg 192
|||||||||| || || ||||||||||||||||| |||||||||| ||| |||| ||||
Sbjct: 134 ggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgatgctgccttgg 193
Query: 193 ccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagactgctttcg 252
||||| | |||||||| ||||| |||| ||| || ||||| | |||||| ||||||| |
Sbjct: 194 ccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaaggctgcttttg 253
Query: 253 atgaggctgagaaaaagaaggaagaagagga 283
| |||||||||||||||||| |||| |||||
Sbjct: 254 acgaggctgagaaaaagaagcaagaggagga 284
>gb|CN815879.1|CN815879 HRO4511_E04_J07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E04_J07, mRNA sequence
Length = 779
Score = 192 bits (97), Expect = 3e-049
Identities = 223/265 (84%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaac 65
|||||||||||||||||||| |||| | |||| || |||||||| ||| |||| ||||||
Sbjct: 227 caaaagaaaatcaagaacccgaacttcaagggcaagtggaaggcgcctttgatcgacaac 286
Query: 66 ccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcatt 125
||||| | |||||||||||| ||||| || || ||||||||| |||| |||| ||||||
Sbjct: 287 ccagagtacaaggatgatccttacatctacgcttttgacagcttgaagcacatcggcatt 346
Query: 126 gagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcct 185
||| |||||||||||||||| || ||| |||| ||||||||| | ||||| ||||| |||
Sbjct: 347 gagttgtggcaggttaaatcgggaactctgttcgacaacatcctgatcacggatgaccct 406
Query: 186 gcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagact 245
| || ||||||| |||||||||||||| ||||||||||| || || || |||||| ||
Sbjct: 407 gagtacgccaagaagtttgcagaggagacctggggcaagcataaagacgctgagaaggct 466
Query: 246 gctttcgatgaggctgagaaaaaga 270
|| || || ||||||||||| ||||
Sbjct: 467 gcctttgacgaggctgagaagaaga 491
>gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_D09_H18, mRNA
sequence
Length = 602
Score = 170 bits (86), Expect = 1e-042
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 5 acaaaagaaaatcaagaaccctaactaccagggtaaatggaaggcacctatgattgacaa 64
||||||||||||||||||||| |||| | |||| || |||||||| ||| |||| |||||
Sbjct: 233 acaaaagaaaatcaagaacccgaacttcaagggcaagtggaaggctcctttgatcgacaa 292
Query: 65 cccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcat 124
|||||| | |||||||||||| ||||| || || ||||||||| |||| |||| |||||
Sbjct: 293 cccagagtacaaggatgatccttacatctacgcttttgacagcttgaagcacatcggcat 352
Query: 125 tgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcc 184
||| |||||||||||||||| || ||| |||| ||||||||| | ||||| ||||| ||
Sbjct: 353 cgagttgtggcaggttaaatctggaactctgttcgacaacatcctgatcacggatgaccc 412
Query: 185 tgcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaagac 244
|| || ||||||| |||||||||||||| ||||| ||||| || || || |||||| |
Sbjct: 413 tgagtatgccaagaagtttgcagaggagacctggggaaagcataaagatgctgagaaggc 472
Query: 245 tgctttcgatgaggctgagaaaaaga 270
||| || || ||||| ||||| ||||
Sbjct: 473 tgcctttgacgaggccgagaagaaga 498
>gb|CN817141.1|CN817141 HRO4528_F11_L22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_F11_L22, mRNA sequence
Length = 594
Score = 145 bits (73), Expect = 6e-035
Identities = 170/201 (84%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 6 caaaagaaaatcaagaaccctaa-ctaccagggtaaatggaaggcacctatgattgacaa 64
|||||||||||||||||||| || ||||| || ||||||||||| ||||||||| |||
Sbjct: 346 caaaagaaaatcaagaaccccaagctacctcgggaaatggaaggcgtctatgattgccaa 405
Query: 65 cccagatttcaaggatgatccgtacatttatgcatttgacagcctgaaatacattggcat 124
|||||| ||| ||||||||| ||||| ||||| || |||||||||| | |||||| ||
Sbjct: 406 cccagacctcacggatgatccttacatctatgctttctacagcctgaagtgcattgggat 465
Query: 125 tgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgatcc 184
| |||||||||||| ||| |||| |||||| |||||||||| ||||| |||||||| |
Sbjct: 466 tcagctgtggcaggataagccaggaactttgattgacaacattctcatccctgatgatgc 525
Query: 185 tgcgttggccaagacttttgc 205
||| ||||||||||| |||||
Sbjct: 526 tgccttggccaagacatttgc 546
>gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D07_G14, mRNA
sequence
Length = 502
Score = 143 bits (72), Expect = 2e-034
Identities = 144/168 (85%)
Strand = Plus / Plus
Query: 116 cattggcattgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcac 175
|||||| |||||||||||||||||||| || || ||||||||||||||||| |||||||
Sbjct: 18 cattggaattgagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcac 77
Query: 176 tgatgatcctgcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggc 235
||| ||| |||| ||||||||| | |||||||| ||||| |||| ||| || ||||| |
Sbjct: 78 tgacgatgctgccttggccaaggcatttgcagaagagacctgggccaaacataaggatgt 137
Query: 236 agagaagactgctttcgatgaggctgagaaaaagaaggaagaagagga 283
|||||| ||||||| || |||||||||||||||||| |||| |||||
Sbjct: 138 tgagaaggctgcttttgacgaggctgagaaaaagaagcaagaggagga 185
>gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H07_O14, mRNA
sequence
Length = 502
Score = 137 bits (69), Expect = 2e-032
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 123 attgagctgtggcaggttaaatcaggcactttgtttgacaacatcatcatcactgatgat 182
|||||||||||||||||||| || || ||||||||||||||||| |||||||||| |||
Sbjct: 24 attgagctgtggcaggttaagtcgggaactttgtttgacaacattctcatcactgacgat 83
Query: 183 cctgcgttggccaagacttttgcagaggagacatggggcaagcacaaggaggcagagaag 242
|||| ||||||||| | |||||||| ||||| |||| ||| || ||||| | ||||||
Sbjct: 84 gctgccttggccaaggcatttgcagaagagacctgggccaaacataaggatgttgagaag 143
Query: 243 actgctttcgatgaggctgagaaaaagaaggaagaagagga 283
||||||| || |||||||||||||||||| |||| |||||
Sbjct: 144 gctgcttttgacgaggctgagaaaaagaagcaagaggagga 184
>gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D07_H13, mRNA sequence
Length = 735
Score = 61.9 bits (31), Expect = 7e-010
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 9 aagaaaatcaagaaccctaactaccagggtaaatggaag 47
|||||||| ||||||||||||||| ||||||||||||||
Sbjct: 174 aagaaaattaagaaccctaactacaagggtaaatggaag 212
>gb|CN815188.1|CN815188 HRO4506_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_H03_O06, mRNA sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.003
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 285 gccgccaagggtggcgatgatgacgatg 312
|||||| || ||||||||||||||||||
Sbjct: 78 gccgccgagcgtggcgatgatgacgatg 51
>gb|CN815249.1|CN815249 HRO4507_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_E10_J19, mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.011
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 294 ggtggcgatgatgacgatgatga 316
||||||||||| |||||||||||
Sbjct: 497 ggtggcgatgacgacgatgatga 519
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 300 gatgatgacgatgatga 316
|||||||||||||||||
Sbjct: 530 gatgatgacgatgatga 546
>gb|CN815371.1|CN815371 HRO4508_H10_P20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H10_P20, mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 0.011
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 294 ggtggcgatgatgacgatgatga 316
||||||||||| |||||||||||
Sbjct: 54 ggtggcgatgacgacgatgatga 76
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 300 gatgatgacgatgatga 316
|||||||||||||||||
Sbjct: 87 gatgatgacgatgatga 103
>gb|CN820541.1|CN820541 HRO4413_E10_I19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E10_I19, mRNA
sequence
Length = 787
Score = 38.2 bits (19), Expect = 0.011
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 294 ggtggcgatgatgacgatgatga 316
||||||||||| |||||||||||
Sbjct: 435 ggtggcgatgacgacgatgatga 457
>gb|CN820763.1|CN820763 HRO4414_E02_I04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_E02_I04, mRNA
sequence
Length = 611
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 299 cgatgatgacgatgatgac 317
|||||||||||||||||||
Sbjct: 92 cgatgatgacgatgatgac 110
>gb|CN816475.1|CN816475 HRO4521_B09_C17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_B09_C17, mRNA sequence
Length = 857
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 300 gatgatgacgatgatga 316
|||||||||||||||||
Sbjct: 321 gatgatgacgatgatga 305
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2341
Number of Sequences: 8143
Number of extensions: 2341
Number of successful extensions: 691
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 41
length of query: 725
length of database: 4,702,463
effective HSP length: 16
effective length of query: 709
effective length of database: 4,572,175
effective search space: 3241672075
effective search space used: 3241672075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)