BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.36
(834 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818898.1|CN818898 HRO4473_B10_XXXZS5 Lib AA070E1X Aven... 511 e-145
gb|CN815124.1|CN815124 HRO4506_B06_C12ZS5 Lib AA071E1X Aven... 157 2e-038
gb|CN816629.1|CN816629 HRO4523_A05_B09ZS5 Lib AA071E1X Aven... 139 4e-033
gb|CN815400.1|CN815400 HRO4509_C03_E05ZS5 Lib AA071E1X Aven... 131 1e-030
gb|CN815715.1|CN815715 HRO4514_G02_M04ZS5 Lib AA071E1X Aven... 100 4e-021
gb|CN816025.1|CN816025 HRO4516_A11_B22ZS5 Lib AA071E1X Aven... 90 4e-018
>gb|CN818898.1|CN818898 HRO4473_B10_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_B10_XXX, mRNA sequence
Length = 683
Score = 511 bits (258), Expect = e-145
Identities = 366/402 (91%)
Strand = Plus / Plus
Query: 130 gatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagca 189
|||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 59 gatggcccgtaccaagcagaccgcccgcaagtccaccggaggcaaggcccccaggaagca 118
Query: 190 gctcgccaccaaggcggcgaggaagtcggcgccgacgaccggcggcgtgaagaagcccca 249
|||||| |||||||| ||||||||||| || || || |||||||||||||||||||||||
Sbjct: 119 gctcgcaaccaaggctgcgaggaagtctgctcccaccaccggcggcgtgaagaagcccca 178
Query: 250 caggtacaggcccgggacggtggcgctgcgcgagatccgcaagtaccagaagagcacgga 309
| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 179 ccgctacaggcccggcacggtggcgctccgcgagatccgcaagtaccagaagagcacgga 238
Query: 310 gctgctgatccggaagttgcccttccagcgcctggtccgtgagatcgctcaggacttcaa 369
|||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 239 gctgctgatccgcaagctgcccttccagcgcctggtccgcgagatcgcccaggacttcaa 298
Query: 370 gacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgaggccta 429
||| || || || ||||||||||||||||| ||||| |||||||| ||||| ||||| ||
Sbjct: 299 gaccgacctccgcttccagagccacgccgtgctggcgctccaggaggccgcggaggcgta 358
Query: 430 cctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccat 489
|||||| || || ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 359 cctcgtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccat 418
Query: 490 catgcccaaagacatccagctcgcccgccgcatccgcggcga 531
||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 419 catgcccaaggacatccagctcgcccgccgcattcgtggcga 460
Score = 93.7 bits (47), Expect = 2e-019
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 27 gatggctcgtacgaagcagaccgcccgcaagtccaccggaggcaaggccccgcgcaagca 86
|||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 59 gatggcccgtaccaagcagaccgcccgcaagtccaccggaggcaaggcccccaggaagca 118
Query: 87 gctcgca 93
|||||||
Sbjct: 119 gctcgca 125
>gb|CN815124.1|CN815124 HRO4506_B06_C12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B06_C12, mRNA sequence
Length = 362
Score = 157 bits (79), Expect = 2e-038
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 445 cgaggacaccaacctctgcgccatccacgcaaagcgcgtcaccatcatgcccaaagacat 504
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 10 cgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggacat 69
Query: 505 ccagctcgcccgccgcatccgcggcgagcgcgcgtaggc 543
|||||||||||||||||||||||| |||||||| |||||
Sbjct: 70 ccagctcgcccgccgcatccgcggggagcgcgcctaggc 108
>gb|CN816629.1|CN816629 HRO4523_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A05_B09, mRNA sequence
Length = 550
Score = 139 bits (70), Expect = 4e-033
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 281 gagatccgcaagtaccagaagagcacggagctgctgatccggaagttgcccttccagcgc 340
|||||||||||||||||||||||||| |||||||| || ||||| | || |||||| |
Sbjct: 36 gagatccgcaagtaccagaagagcactgagctgctcataaggaagctcccattccagagg 95
Query: 341 ctggtccgtgagatcgctcaggacttcaagacggatctgcggttccagagccacgccgtc 400
|| || | ||||| || ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 96 cttgttagggagattgcccaggatttcaagactgatctgcgtttccagagccacgcagtg 155
Query: 401 ctggccctccaggaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctc 460
|| || || ||||| || || ||||| ||||| || || || || ||||||||||||||
Sbjct: 156 cttgctcttcaggaggctgcagaggcgtacctggtgggtctctttgaggacaccaacctg 215
Query: 461 tgcgccatccacgcaaagcgcgtcaccatcatgcccaaagacatccagct 510
||||||||||| || ||| | || |||||||||||||| ||||| |||||
Sbjct: 216 tgcgccatccatgccaagagggtgaccatcatgcccaaggacattcagct 265
>gb|CN815400.1|CN815400 HRO4509_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C03_E05, mRNA sequence
Length = 516
Score = 131 bits (66), Expect = 1e-030
Identities = 189/230 (82%)
Strand = Plus / Plus
Query: 281 gagatccgcaagtaccagaagagcacggagctgctgatccggaagttgcccttccagcgc 340
|||||||||||||||||||||||||| |||||||| || ||||| | || |||||| |
Sbjct: 27 gagatccgcaagtaccagaagagcactgagctgctcataaggaagctcccattccagagg 86
Query: 341 ctggtccgtgagatcgctcaggacttcaagacggatctgcggttccagagccacgccgtc 400
|| || | ||||| || ||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 87 cttgttagggagattgcccaggatttcaagactgatctgcgtttccagagccatgcagtg 146
Query: 401 ctggccctccaggaagccgccgaggcctacctcgtcggcctgttcgaggacaccaacctc 460
|| || || ||||| || || ||||| ||||| || || || || ||||||||||||||
Sbjct: 147 cttgctcttcaggaggctgcagaggcgtacctggtgggtctctttgaggacaccaacctg 206
Query: 461 tgcgccatccacgcaaagcgcgtcaccatcatgcccaaagacatccagct 510
||||||||||| || ||| | || |||||||||||||| ||||| |||||
Sbjct: 207 tgcgccatccatgccaagagggtgaccatcatgcccaaggacattcagct 256
>gb|CN815715.1|CN815715 HRO4514_G02_M04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_G02_M04, mRNA sequence
Length = 682
Score = 99.6 bits (50), Expect = 4e-021
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 365 ttcaagacggatctgcggttccagagccacgccgtcctggccctccaggaagccgccgag 424
|||||||| |||||||| |||||||||||||| || || || || ||||| || || |||
Sbjct: 15 ttcaagactgatctgcgtttccagagccacgcagtgcttgctcttcaggaggctgcagag 74
Query: 425 gcctacctcgtcggcctgttcgaggacaccaacctctgcgccatccacgcaaagcgcgtc 484
|| ||||| || || || || |||||||||||||| ||||||||||| || ||| | ||
Sbjct: 75 gcgtacctggtgggtctctttgaggacaccaacctgtgcgccatccatgccaagagggtg 134
Query: 485 accatcatgcccaaagacatccagct 510
|||||||||||||| ||||| |||||
Sbjct: 135 accatcatgcccaaggacattcagct 160
>gb|CN816025.1|CN816025 HRO4516_A11_B22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A11_B22, mRNA sequence
Length = 229
Score = 89.7 bits (45), Expect = 4e-018
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 476 aagcgcgtcaccatcatgcccaaagacatccagctcgcccgccgcatccgcggcgag 532
|||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 12 aagcgcgtcaccttcatgcccaaggacatccagctcgcccgccgcatccgtggcgag 68
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1746
Number of Sequences: 8143
Number of extensions: 1746
Number of successful extensions: 525
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 7
length of query: 834
length of database: 4,702,463
effective HSP length: 16
effective length of query: 818
effective length of database: 4,572,175
effective search space: 3740039150
effective search space used: 3740039150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)