BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.355
(842 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 402 e-112
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 381 e-106
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 377 e-104
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 375 e-104
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 327 9e-090
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 323 1e-088
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 242 4e-064
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 161 1e-039
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 155 8e-038
gb|CN821547.1|CN821547 HRO4426_E09_I18ZS5 Lib AA069E1X Aven... 34 0.19
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 402 bits (203), Expect = e-112
Identities = 295/325 (90%), Gaps = 3/325 (0%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
||||||||| |||||||| || || |||||||||||||||||||| ||||||||||| ||
Sbjct: 344 ctaagaggatgtaaactttgtgacagccttggtgccctcggagaccgcgtgcttggcaag 285
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
|||||| || ||||| ||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 284 ctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 225
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
|||||| ||||||||||||||||| | |||| |||| || ||||| ||||||||||||||
Sbjct: 224 cttgttatagcgggcgagcttggcagactcgccagcgagtttctcaaagatgtcgttgat 165
Query: 497 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 556
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 164 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 105
Query: 557 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggccttcttcttccc 616
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 104 gaggaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttcttgcc 45
Query: 617 cttctt---ctcgccgccctccttg 638
|||||| ||||||||||||||||
Sbjct: 44 cttcttcccctcgccgccctccttg 20
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 381 bits (192), Expect = e-106
Identities = 258/280 (92%)
Strand = Plus / Minus
Query: 330 aacttggtaacggccttggtgccctcggagacggcgtgcttggcgagctcgccaggaagg 389
|||||||| ||||||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct: 290 aacttggtgacggccttggtgccctctgacacggcgtgcttggcgagctcgccggggagg 231
Query: 390 acgaggcgcaccgaagtctggatctcccgggaggttatggtgggcttcttgttgtagcgg 449
|| ||||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 230 acaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgc 171
Query: 450 gcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgatgaaggagttcatg 509
|| ||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||
Sbjct: 170 gccagcttggcggcctcgccagcgagtttctcaaagatgtcgttgatgaaggagttcatg 111
Query: 510 atggacatggccttggacgagataccaatgtccgggtgcacctgcttgagcaccttgaag 569
||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 110 atggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagcaccttgaag 51
Query: 570 atgtagatcttgtacgtctcgacgctcttcttggccttct 609
|||||||||||||| ||||||||||||||||| |||||||
Sbjct: 50 atgtagatcttgtaggtctcgacgctcttcttcgccttct 11
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 377 bits (190), Expect = e-104
Identities = 256/278 (92%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
||||||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 288 ctaagaggatgtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcgag 229
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
||| || || ||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 228 ctcccctgggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggctt 169
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 168 cttgttgtagcgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttgat 109
Query: 497 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 556
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 108 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 49
Query: 557 gagcaccttgaagatgtagatcttgtacgtctcgacgc 594
||| ||||||||||||||||||||||| ||||||||||
Sbjct: 48 gaggaccttgaagatgtagatcttgtaggtctcgacgc 11
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 375 bits (189), Expect = e-104
Identities = 270/297 (90%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 316 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 257
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
|||||| || ||||||||||| || || ||||| |||||||||||||| |||||||||||
Sbjct: 256 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 197
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
|||||||||||| ||||||||||| | ||| |||| |||||||| ||||||||||| ||
Sbjct: 196 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 137
Query: 497 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 556
|||||||||||||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct: 136 gaaggagttcatgatggacatggccttggaggatatgccgatgtccgggtgcacctgctt 77
Query: 557 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggccttcttctt 613
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 76 gagcaccttgaagatgtagatcttgtaggtctcgacgctcttctttgccttcttctt 20
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 327 bits (165), Expect = 9e-090
Identities = 246/273 (90%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 283 ctaagaggaagtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 224
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
||| || ||||| || || || || |||||||||||||||| |||||| |||||||||||
Sbjct: 223 ctcccctggaagcacaagacgaacagaagtctggatctccctggaggtgatggtgggctt 164
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
||||||||| | ||||||||||| | |||| ||||||||||||| ||||| ||||||||
Sbjct: 163 cttgttgtacctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttgat 104
Query: 497 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 556
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct: 103 gaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgctt 44
Query: 557 gagcaccttgaagatgtagatcttgtacgtctc 589
||| ||||||||||||||||||||||| |||||
Sbjct: 43 gaggaccttgaagatgtagatcttgtaggtctc 11
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 323 bits (163), Expect = 1e-088
Identities = 285/325 (87%), Gaps = 3/325 (0%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
|||||| || || ||||| || || ||||||||||||||||| ||||| |||||||||||
Sbjct: 356 ctaagacgaggtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgag 297
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
||| || || ||||| ||||| || || |||||||||||||||||||| |||||||||||
Sbjct: 296 ctccccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 237
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
||||||||| | || ||||| || | |||| |||| || ||||||||||||||||||||
Sbjct: 236 cttgttgtacctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgat 177
Query: 497 gaaggagttcatgatggacatggccttggacgagataccaatgtccgggtgcacctgctt 556
|||||||||||||||||||||||||||||| ||||| || ||||| || |||||||||||
Sbjct: 176 gaaggagttcatgatggacatggccttggaggagatgccgatgtcgggatgcacctgctt 117
Query: 557 gagcaccttgaagatgtagatcttgtacgtctcgacgctcttcttggccttcttcttccc 616
|| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 116 caggaccttgaagatgtagatcttgtatgtctctacgctcttcttggctttcttcttgcc 57
Query: 617 cttctt---ctcgccgccctccttg 638
|||||| ||||||||||||||||
Sbjct: 56 cttcttcccctcgccgccctccttg 32
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 242 bits (122), Expect = 4e-064
Identities = 185/206 (89%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 229 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 170
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
|||||| || ||||||||||| || || ||||| |||||||||||||| |||||||||||
Sbjct: 169 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 110
Query: 437 cttgttgtagcgggcgagcttggcggcctcggcagccagcttctcgaagatgtcgttgat 496
|||||||||||| ||||||||||| | ||| |||| |||||||| ||||||||||| ||
Sbjct: 109 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 50
Query: 497 gaaggagttcatgatggacatggcct 522
||||||||||||||||||||||||||
Sbjct: 49 gaaggagttcatgatggacatggcct 24
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 161 bits (81), Expect = 1e-039
Identities = 120/133 (90%)
Strand = Plus / Minus
Query: 330 aacttggtaacggccttggtgccctcggagacggcgtgcttggcgagctcgccaggaagg 389
|||||||| || |||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 163 aacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccggggagg 104
Query: 390 acgaggcgcaccgaagtctggatctcccgggaggttatggtgggcttcttgttgtagcgg 449
|||||||| || || ||||||||||||| |||||| |||||||||||||||||||| |
Sbjct: 103 acgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtacctc 44
Query: 450 gcgagcttggcgg 462
|||||||||||||
Sbjct: 43 gcgagcttggcgg 31
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 155 bits (78), Expect = 8e-038
Identities = 130/146 (89%), Gaps = 1/146 (0%)
Strand = Plus / Minus
Query: 317 ctaagaggaagtaaacttggtaacggccttggtgccctcggagacggcgtgcttggcgag 376
||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 178 ctaagaggaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 119
Query: 377 ctcgccaggaaggacgaggcgcaccgaagtctggatctcccgggaggttatggtgggctt 436
|| || || ||||||||||| || || ||||||||||||| |||||| |||||||||||
Sbjct: 118 ttccccggggaggacgaggcggacggaggtctggatctccctggaggtgatggtgggctt 59
Query: 437 cttgttgtagcgggcgagcttggcgg 462
|||| | ||||||||||||||||||
Sbjct: 58 cttg-taaagcgggcgagcttggcgg 34
>gb|CN821547.1|CN821547 HRO4426_E09_I18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E09_I18, mRNA
sequence
Length = 579
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 297 tcgctccgtgcggcggc 313
|||||||||||||||||
Sbjct: 4 tcgctccgtgcggcggc 20
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2231
Number of Sequences: 8143
Number of extensions: 2231
Number of successful extensions: 593
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 14
length of query: 842
length of database: 4,702,463
effective HSP length: 16
effective length of query: 826
effective length of database: 4,572,175
effective search space: 3776616550
effective search space used: 3776616550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)