BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.29
(685 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 422 e-118
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 412 e-115
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 404 e-113
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 392 e-109
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 355 3e-098
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 311 4e-085
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 246 2e-065
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 188 4e-048
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 165 6e-041
gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Aven... 34 0.16
gb|CN816416.1|CN816416 HRO4520_E04_J08ZS5 Lib AA071E1X Aven... 34 0.16
gb|CN820031.1|CN820031 HRO4410_C12_E24ZS5 Lib AA069E1X Aven... 34 0.16
gb|CN820039.1|CN820039 HRO4410_D09_G18ZS5 Lib AA069E1X Aven... 34 0.16
gb|CN820173.1|CN820173 HRO4412_A03_B06ZS5 Lib AA069E1X Aven... 34 0.16
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 422 bits (213), Expect = e-118
Identities = 270/289 (93%)
Strand = Plus / Plus
Query: 239 agaaggcgaagaagtccgtggagacctacaagatctacatcttcaaggtgctgaagcagg 298
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcagg 70
Query: 299 tgcaccccgacatcggcatctcgtccaaggccatgtccatcatgaactccttcatcaacg 358
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 71 tgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacg 130
Query: 359 acatcttcgagaagctcgcggccgagtccgccaagctggcgcgctacaacaagaagccca 418
||||||| ||||| ||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 131 acatctttgagaaactcgctggcgaggccgccaagctggcgcgctacaacaagaagccca 190
Query: 419 ccatcacctcccgcgagatccagacctcggtgcgcctcgtcctccccggcgagctcgcca 478
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 191 ccatcacctcccgggagatccagacctccgtccgccttgtcctccccggcgagctcgcca 250
Query: 479 agcacgccgtctccgagggcactaaggccgttacgaagttcacctcgtc 527
|||||||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 251 agcacgccgtgtcagagggcaccaaggccgtcaccaagttcacctcgtc 299
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 412 bits (208), Expect = e-115
Identities = 298/328 (90%)
Strand = Plus / Plus
Query: 204 gtccaaggagggcggcgagggcaagaaggggaaaaagaaggcgaagaagtccgtggagac 263
||||||||||||||||||||| |||||||| || ||||| || |||||| ||| |||||
Sbjct: 29 gtccaaggagggcggcgaggggaagaagggcaagaagaaagccaagaagagcgtagagac 88
Query: 264 ctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcgtc 323
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 89 atacaagatctacatcttcaaggtcctgaagcaggtgcatcccgacatcggcatctcctc 148
Query: 324 caaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgcggccga 383
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 149 caaggccatgtccatcatgaactccttcatcaacgacatcttcgagaaactcgctggcga 208
Query: 384 gtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagac 443
||| || ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209 gtcggcaaagcttgcgaggtacaacaagaagcccaccatcacctcccgggagatccagac 268
Query: 444 ctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcactaa 503
||| || ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 269 ctccgtccgccttgtcctccccggggagctcgccaagcatgccgtgtccgagggcaccaa 328
Query: 504 ggccgttacgaagttcacctcgtcttag 531
||| || |||||||||||||||||||||
Sbjct: 329 ggctgtcacgaagttcacctcgtcttag 356
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 404 bits (204), Expect = e-113
Identities = 297/328 (90%)
Strand = Plus / Plus
Query: 205 tccaaggagggcggcgagggcaagaaggggaaaaagaaggcgaagaagtccgtggagacc 264
|||||||||||||||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 18 tccaaggagggcggcgaggggaagaagggcaagaagaaggcgaagaagagcgtcgagacc 77
Query: 265 tacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcgtcc 324
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 78 tacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcggcatctcctcc 137
Query: 325 aaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgcggccgag 384
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||
Sbjct: 138 aaggccatgtccatcatgaactccttcatcaacgacatctttgagaaactcgctggcgag 197
Query: 385 tccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccagacc 444
|| |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 198 tctgccaagctcgcccgctataacaagaagcccaccatcacctcccgggagatccagacc 257
Query: 445 tcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcactaag 504
|| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 258 tccgtccgccttgtcctccccggcgagcttgccaagcacgcggtctccgagggcaccaag 317
Query: 505 gccgttacgaagttcacctcgtcttagg 532
|| || || ||||| || || |||||||
Sbjct: 318 gctgtcacaaagtttacatcctcttagg 345
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 392 bits (198), Expect = e-109
Identities = 255/274 (93%)
Strand = Plus / Plus
Query: 259 gagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatc 318
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 16 gagacctacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcggcatc 75
Query: 319 tcgtccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgcg 378
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgct 135
Query: 379 gccgagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatc 438
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 136 ggcgagtccgccaagctggcccgctacaacaagaagcccaccatcacctcccgggagatc 195
Query: 439 cagacctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggc 498
|||||||| || |||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 196 cagacctccgtccgcctcgtcctcccaggggagctcgccaagcacgctgtctctgagggc 255
Query: 499 actaaggccgttacgaagttcacctcgtcttagg 532
|| |||||||| || |||||||| || |||||||
Sbjct: 256 accaaggccgtcacaaagttcacatcctcttagg 289
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 355 bits (179), Expect = 3e-098
Identities = 266/295 (90%)
Strand = Plus / Plus
Query: 238 aagaaggcgaagaagtccgtggagacctacaagatctacatcttcaaggtgctgaagcag 297
|||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 23 aagaaggcaaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcag 82
Query: 298 gtgcaccccgacatcggcatctcgtccaaggccatgtccatcatgaactccttcatcaac 357
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct: 83 gtgcacccggacatcggcatatcctccaaggccatgtccatcatgaactccttcattaac 142
Query: 358 gacatcttcgagaagctcgcggccgagtccgccaagctggcgcgctacaacaagaagccc 417
|||||||| |||||||| || | ||||| |||||||| || ||||||||||||||||||
Sbjct: 143 gacatctttgagaagcttgctggggagtctgccaagctcgctcgctacaacaagaagccc 202
Query: 418 accatcacctcccgcgagatccagacctcggtgcgcctcgtcctccccggcgagctcgcc 477
|||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct: 203 accatcacctcccgggagatacagacctctgtccgcctcgtcctccccggcgagctcgcc 262
Query: 478 aagcacgccgtctccgagggcactaaggccgttacgaagttcacctcgtcttagg 532
|||||||| ||||| |||||||| ||||| || || |||||||| || |||||||
Sbjct: 263 aagcacgctgtctctgagggcaccaaggctgtcaccaagttcacatcctcttagg 317
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 311 bits (157), Expect = 4e-085
Identities = 247/277 (89%)
Strand = Plus / Plus
Query: 258 ggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcat 317
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 10 ggagacctacaagatctacatcttcaaggtcctcaagcaggtccaccccgacatcggcat 69
Query: 318 ctcgtccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgc 377
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 70 ctcctccaaggccatgtccatcatgaactccttcatcaacgatatctttgagaagctggc 129
Query: 378 ggccgagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagat 437
| |||||| |||||||| ||| | ||||||||||||||||||||||||||| | |||||
Sbjct: 130 tggcgagtctgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagat 189
Query: 438 ccagacctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgaggg 497
|||||| || || || || || || || || ||||||||||||||||||||||| |||||
Sbjct: 190 ccagacttctgttcgtcttgtgcttccaggggagctcgccaagcacgccgtctctgaggg 249
Query: 498 cactaaggccgttacgaagttcacctcgtcttaggat 534
||| |||||||| || |||||||| || |||||||||
Sbjct: 250 caccaaggccgtcaccaagttcacttcctcttaggat 286
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 246 bits (124), Expect = 2e-065
Identities = 196/220 (89%)
Strand = Plus / Plus
Query: 313 ggcatctcgtccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 372
||||| || ||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 11 ggcatatcctcctaggccatgtccatcatgaactccttcattaacgacatctttgagaag 70
Query: 373 ctcgcggccgagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgc 432
|| || | ||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 71 cttgctggggagtctgccaagctcgctcgctacaacaagaagcccaccatcacctcccgg 130
Query: 433 gagatccagacctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctcc 492
||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 131 gagatacagacctctgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctct 190
Query: 493 gagggcactaaggccgttacgaagttcacctcgtcttagg 532
|||||||| ||||| || || |||||||| || |||||||
Sbjct: 191 gagggcaccaaggctgtcaccaagttcacatcctcttagg 230
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 188 bits (95), Expect = 4e-048
Identities = 131/143 (91%)
Strand = Plus / Plus
Query: 382 gagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccag 441
|||||||||||||| ||| | ||||||||||||||||||||||||||| | |||||||||
Sbjct: 27 gagtccgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagatccag 86
Query: 442 acctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcact 501
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 87 acctccgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctccgagggcacc 146
Query: 502 aaggccgttacgaagttcacctc 524
||||| || || |||||||||||
Sbjct: 147 aaggctgtcaccaagttcacctc 169
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 165 bits (83), Expect = 6e-041
Identities = 135/151 (89%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 382 gagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccag 441
|||||||||||||| || |||| | |||||||||||||||||||||| | |||||||||
Sbjct: 30 gagtccgccaagctcgcccgcttta-caagaagcccaccatcacctccagggagatccag 88
Query: 442 acctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcact 501
||||| || ||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 89 acctccgtccgcctcgtcctccccggggaactcgccaagcacgccgtctctgagggcacc 148
Query: 502 aaggccgttacgaagttcacctcgtcttagg 532
|||||||| || ||||||||||| |||||||
Sbjct: 149 aaggccgtcaccaagttcacctcctcttagg 179
>gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F10_L20, mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 238 aagaaggcgaagaagtc 254
|||||||||||||||||
Sbjct: 84 aagaaggcgaagaagtc 100
>gb|CN816416.1|CN816416 HRO4520_E04_J08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_E04_J08, mRNA sequence
Length = 783
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 237 aaagaaggcgaagaagt 253
|||||||||||||||||
Sbjct: 302 aaagaaggcgaagaagt 318
>gb|CN820031.1|CN820031 HRO4410_C12_E24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_C12_E24, mRNA
sequence
Length = 611
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 237 aaagaaggcgaagaagt 253
|||||||||||||||||
Sbjct: 408 aaagaaggcgaagaagt 424
>gb|CN820039.1|CN820039 HRO4410_D09_G18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_D09_G18, mRNA
sequence
Length = 370
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 237 aaagaaggcgaagaagt 253
|||||||||||||||||
Sbjct: 147 aaagaaggcgaagaagt 163
>gb|CN820173.1|CN820173 HRO4412_A03_B06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_A03_B06, mRNA
sequence
Length = 568
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 237 aaagaaggcgaagaagt 253
|||||||||||||||||
Sbjct: 350 aaagaaggcgaagaagt 366
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1882
Number of Sequences: 8143
Number of extensions: 1882
Number of successful extensions: 537
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 19
length of query: 685
length of database: 4,702,463
effective HSP length: 16
effective length of query: 669
effective length of database: 4,572,175
effective search space: 3058785075
effective search space used: 3058785075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)