BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.288
(1775 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Aven... 726 0.0
gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Aven... 424 e-118
gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Aven... 268 2e-071
gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Aven... 101 2e-021
gb|CN819204.1|CN819204 HRO4451_D01_G01ZS5 Lib AA070E1X Aven... 36 0.10
>gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_H07_O13, mRNA
sequence
Length = 839
Score = 726 bits (366), Expect = 0.0
Identities = 705/818 (86%)
Strand = Plus / Plus
Query: 548 cttgattgctggtgacgatcttatccattcggatgtgatactagggtctgaaaagattga 607
|||||||||||| || ||||| || || || ||||||||| | || || ||||||||||
Sbjct: 11 cttgattgctggggatgatctgatacagtcagatgtgatattgggatccaaaaagattga 70
Query: 608 ggctcctgtattgtttcgaggaattggacacatggctaatccatcaaacagtttggttct 667
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 71 gtctcctgtattgtttcgaggaattggacatgcagctcatccatcaaacagtttggtttt 130
Query: 668 gaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagttagcgtc 727
||| ||||| || || || |||||||| |||||||| || || ||||||||||| || ||
Sbjct: 131 gaaagttctgtctgcttccccatcagcgtattcagcaaacccgaagactaagttggcatc 190
Query: 728 tcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaagaaataa 787
|||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 191 ccctccatctctcacagggtcagctatatcactggtttctgttatgcaggcaagaaataa 250
Query: 788 tgctcgggtgctgttatctggatcactcgatctgtttagcaaccggttcctgaagtctgg 847
|||||| ||| || |||||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 251 tgctcgtgtgttgatatctggatcgctggatttgtttagcaaccgcttcctgaagtctgg 310
Query: 848 tgttcaaaaggctgatagcaaaacaagatatgagagagctggaaacgagcaatttgtggc 907
|||| | ||||| | |||||| | ||| |||||| ||||||||| || ||||| ||| |
Sbjct: 311 tgttaagaaggcgggtagcaagataagccatgagaaagctggaaatgaacaattcgtgac 370
Query: 908 agagataagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggca 967
||||| ||||||||||| |||||||||||||| ||||||||||| || |||||| |||
Sbjct: 371 agagacgagcaaatgggtcttccatgagaggggccatctaaaggcagtgaatgttgtgca 430
Query: 968 tcacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaata 1027
||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 431 ccacaaggttggagagacaaatgaacctagcatgtaccgcattaatgatgacttggaata 490
Query: 1028 ctctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgt 1087
||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 491 ctcggttgagatctatgaatggtctggaacaagctggaaaccatatgttgctgatgatgt 550
Query: 1088 gcagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaa 1147
|| |||| |||| ||||||||| ||||| |||||||||| ||||| |||||||| ||
Sbjct: 551 tcaaattcagttttacatgatgagtccttatgttctgaaaaacatgtcaactgacaaaaa 610
Query: 1148 gggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagt 1207
||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 611 gggcttgtattcaacatccttcaaagttccggatgtttatggagttttccagttcaaagt 670
Query: 1208 tgagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcc 1267
||||||||| || || ||||| |||||| | ||| | |||||||||||||||| | ||
Sbjct: 671 tgagtaccagaggcttggatacactggtgtttctctggcaaagcagattccagtgaggcc 730
Query: 1268 ttacagacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctc 1327
||||| ||||||||||| || ||||||||||| ||||| || |||||||| | |||||
Sbjct: 731 atacaggcataatgagtacgaaagattcataacttcagcatatccatactatgctgcctc 790
Query: 1328 attttcaacaatgggtgctttcttcgtattctcgtttg 1365
|||||||||||||| ||||| ||| ||||||| ||||
Sbjct: 791 gttttcaacaatgggagcttttttcatattctcatttg 828
>gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D10_G20, mRNA
sequence
Length = 766
Score = 424 bits (214), Expect = e-118
Identities = 391/450 (86%)
Strand = Plus / Plus
Query: 935 gaggggacatctaaaggctgttaatgttaggcatcacaaggttggggagaccaatgaacc 994
|||||| ||||||||||| || |||||| ||| ||||||||||| ||||| ||||||||
Sbjct: 20 gaggggccatctaaaggcagtgaatgttgtgcaccacaaggttggagagacaaatgaacc 79
Query: 995 aggcatgtaccgcattaatgatgacctggaatactctgttgagatctatgaatggtccgg 1054
||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 80 tagcatgtaccgcattaatgatgacttggaatactcggttgagatctatgaatggtctgg 139
Query: 1055 aacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagccc 1114
|||||||||||| || ||||||||||||||||| || |||| |||| ||||||||| ||
Sbjct: 140 aacaagctggaaaccatatgttgctgatgatgttcaaattcagttttacatgatgagtcc 199
Query: 1115 ttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagt 1174
||| |||||||||| ||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct: 200 ttatgttctgaaaaacatgtcaactgacaaaaagggcttgtattcaacatccttcaaagt 259
Query: 1175 tccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactgg 1234
||| |||||||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct: 260 tccggatgtttatggagttttccagttcaaagttgagtaccagaggcttggatacactgg 319
Query: 1235 tctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagatt 1294
| | ||| | |||||||||||||||| | || ||||| ||||||||||| || |||||
Sbjct: 320 tgtttctctggcaaagcagattccagtgaggccatacaggcataatgagtacgaaagatt 379
Query: 1295 cataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgt 1354
|||||| ||||| || |||||||| | ||||| |||||||||||||| ||||| ||| |
Sbjct: 380 cataacttcagcatatccatactatgctgcctcgttttcaacaatgggagcttttttcat 439
Query: 1355 attctcgtttgtgtacctgtaccacaaata 1384
|||||| |||| ||| |||||||||||||
Sbjct: 440 attctcatttgcatacttgtaccacaaata 469
>gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F03_L06, mRNA
sequence
Length = 577
Score = 268 bits (135), Expect = 2e-071
Identities = 249/287 (86%)
Strand = Plus / Plus
Query: 1098 tttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtat 1157
|||| ||||||||| |||||||||||||||| |||||| |||||||| |||||||| |||
Sbjct: 21 ttttacatgatgagtccttacgttctgaaaaatatgtcaactgacaagaagggtttatat 80
Query: 1158 tcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaa 1217
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcaacatccttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccag 140
Query: 1218 agactgggatatactggtctgtcttttacaaagcagattccagtacgtccttacagacat 1277
|| || ||||| |||| | | ||| | |||||||||||||||| | || ||||| |||
Sbjct: 141 aggcttggatacactgctgtttctctggcaaagcagattccagtgaggccatacaggcat 200
Query: 1278 aatgagtatgagagattcataacatcagcgtacccatactacaccgcctcattttcaaca 1337
|||||||| |||||||||||||| ||||| || |||||||| | ||||| |||||||||
Sbjct: 201 aatgagtacgagagattcataacttcagcatatccatactatgctgcctcgttttcaaca 260
Query: 1338 atgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaata 1384
||||| || || ||| ||||||| |||| |||||||| ||||||||
Sbjct: 261 atgggagcctttttcatattctcatttgcatacctgtatcacaaata 307
>gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H10_P20, mRNA
sequence
Length = 338
Score = 101 bits (51), Expect = 2e-021
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 1246 caaagcagattccagtacgtccttacagacataatgagtatgagagattcataacatcag 1305
|||||||||||||||| | || ||||| ||||||||||| || ||||||||||| |||
Sbjct: 29 caaagcagattccagtgaggccatacaggcataatgagtacgaaagattcataactccag 88
Query: 1306 cgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctcgtttg 1365
| || |||||||| | ||||| |||||||||||||| ||||| ||| ||||||| ||||
Sbjct: 89 catatccatactatgctgcctcgttttcaacaatgggagcttttttcatattctcatttg 148
Query: 1366 tgtacctgtaccacaaata 1384
||| |||||||||||||
Sbjct: 149 catacttgtaccacaaata 167
>gb|CN819204.1|CN819204 HRO4451_D01_G01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_D01_G01, mRNA sequence
Length = 717
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1073 tgttgctgatgatgtgca 1090
||||||||||||||||||
Sbjct: 411 tgttgctgatgatgtgca 394
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3998
Number of Sequences: 8143
Number of extensions: 3998
Number of successful extensions: 1057
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 7
length of query: 1775
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1758
effective length of database: 4,564,032
effective search space: 8023568256
effective search space used: 8023568256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)