BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.287
(857 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 440 e-124
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 410 e-115
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 402 e-112
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 400 e-112
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 385 e-107
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 347 1e-095
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 281 5e-076
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 208 6e-054
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 194 9e-050
gb|CN815448.1|CN815448 HRO4509_G08_M15ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN820111.1|CN820111 HRO4411_C03_F05ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 440 bits (222), Expect = e-124
Identities = 264/278 (94%)
Strand = Plus / Plus
Query: 253 aagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccg 312
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccg 78
Query: 313 gacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttc 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttt 138
Query: 373 gagaagctggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacg 432
||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 139 gagaaactcgctggcgaggccgccaagctggcgcgctacaacaagaagcccaccatcacc 198
Query: 433 tcccgcgagatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgcc 492
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 199 tcccgggagatccagacctccgtccgccttgtcctccccggcgagctcgccaagcacgcc 258
Query: 493 gtctctgagggcaccaaggccgtcaccaagttcacctc 530
|| || ||||||||||||||||||||||||||||||||
Sbjct: 259 gtgtcagagggcaccaaggccgtcaccaagttcacctc 296
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 410 bits (207), Expect = e-115
Identities = 279/303 (92%)
Strand = Plus / Plus
Query: 238 ggcaagaagaagggcaagaagagcgtggagacgtacaagatctacatcttcaaggtgctg 297
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 17 ggcaagaagaaggcaaagaagagcgtcgagacctacaagatctacatcttcaaggtgctc 76
Query: 298 aagcaggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttc 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 77 aagcaggtgcacccggacatcggcatatcctccaaggccatgtccatcatgaactccttc 136
Query: 358 atcaacgacatcttcgagaagctggccggcgaggccgccaagctcgcgcgctacaacaag 417
|| ||||||||||| |||||||| || || ||| | ||||||||||| ||||||||||||
Sbjct: 137 attaacgacatctttgagaagcttgctggggagtctgccaagctcgctcgctacaacaag 196
Query: 418 aagcccaccatcacgtcccgcgagatccagacctccgtgcgcctcgtgctccccggcgag 477
|||||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||||||
Sbjct: 197 aagcccaccatcacctcccgggagatacagacctctgtccgcctcgtcctccccggcgag 256
Query: 478 ctcgccaagcacgccgtctctgagggcaccaaggccgtcaccaagttcacctcctcctag 537
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 257 ctcgccaagcacgctgtctctgagggcaccaaggctgtcaccaagttcacatcctcttag 316
Query: 538 gct 540
|||
Sbjct: 317 gct 319
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 402 bits (203), Expect = e-112
Identities = 260/279 (93%)
Strand = Plus / Plus
Query: 260 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 319
|||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 11 gcgtcgagacctacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcg 70
Query: 320 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 130
Query: 380 tggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacgtcccgcg 439
| || |||||| |||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct: 131 tcgctggcgagtccgccaagctggcccgctacaacaagaagcccaccatcacctcccggg 190
Query: 440 agatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtctctg 499
|||||||||||||||| |||||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 191 agatccagacctccgtccgcctcgtcctcccaggggagctcgccaagcacgctgtctctg 250
Query: 500 agggcaccaaggccgtcaccaagttcacctcctcctagg 538
||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 251 agggcaccaaggccgtcacaaagttcacatcctcttagg 289
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 400 bits (202), Expect = e-112
Identities = 295/326 (90%)
Strand = Plus / Plus
Query: 213 caaggagggcggcgagggcaagcgtggcaagaagaagggcaagaagagcgtggagacgta 272
|||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| ||
Sbjct: 20 caaggagggcggcgaggggaagaagggcaagaagaaggcgaagaagagcgtcgagaccta 79
Query: 273 caagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcatctcctccaa 332
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 80 caagatctacatcttcaaggtcctcaagcaggtgcacccggacatcggcatctcctccaa 139
Query: 333 ggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctggccggcgaggc 392
||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| |
Sbjct: 140 ggccatgtccatcatgaactccttcatcaacgacatctttgagaaactcgctggcgagtc 199
Query: 393 cgccaagctcgcgcgctacaacaagaagcccaccatcacgtcccgcgagatccagacctc 452
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 200 tgccaagctcgcccgctataacaagaagcccaccatcacctcccgggagatccagacctc 259
Query: 453 cgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtctctgagggcaccaaggc 512
||| ||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 260 cgtccgccttgtcctccccggcgagcttgccaagcacgcggtctccgagggcaccaaggc 319
Query: 513 cgtcaccaagttcacctcctcctagg 538
||||| ||||| || ||||| ||||
Sbjct: 320 tgtcacaaagtttacatcctcttagg 345
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 385 bits (194), Expect = e-107
Identities = 287/318 (90%)
Strand = Plus / Plus
Query: 213 caaggagggcggcgagggcaagcgtggcaagaagaagggcaagaagagcgtggagacgta 272
|||||||||||||||||| ||| ||||||||||| | |||||||||||| ||||| ||
Sbjct: 32 caaggagggcggcgaggggaagaagggcaagaagaaagccaagaagagcgtagagacata 91
Query: 273 caagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcatctcctccaa 332
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 92 caagatctacatcttcaaggtcctgaagcaggtgcatcccgacatcggcatctcctccaa 151
Query: 333 ggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctggccggcgaggc 392
||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
Sbjct: 152 ggccatgtccatcatgaactccttcatcaacgacatcttcgagaaactcgctggcgagtc 211
Query: 393 cgccaagctcgcgcgctacaacaagaagcccaccatcacgtcccgcgagatccagacctc 452
|| ||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 212 ggcaaagcttgcgaggtacaacaagaagcccaccatcacctcccgggagatccagacctc 271
Query: 453 cgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtctctgagggcaccaaggc 512
||| ||||| || |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 272 cgtccgccttgtcctccccggggagctcgccaagcatgccgtgtccgagggcaccaaggc 331
Query: 513 cgtcaccaagttcacctc 530
||||| |||||||||||
Sbjct: 332 tgtcacgaagttcacctc 349
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 347 bits (175), Expect = 1e-095
Identities = 250/275 (90%)
Strand = Plus / Plus
Query: 264 ggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcat 323
|||||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 10 ggagacctacaagatctacatcttcaaggtcctcaagcaggtccaccccgacatcggcat 69
Query: 324 ctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctggc 383
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 70 ctcctccaaggccatgtccatcatgaactccttcatcaacgatatctttgagaagctggc 129
Query: 384 cggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacgtcccgcgagat 443
|||||| | |||||||||||| | ||||||||||||||||||||||| ||| | |||||
Sbjct: 130 tggcgagtctgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagat 189
Query: 444 ccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtctctgaggg 503
|||||| || || || || ||||| || || |||||||||||||||||||||||||||||
Sbjct: 190 ccagacttctgttcgtcttgtgcttccaggggagctcgccaagcacgccgtctctgaggg 249
Query: 504 caccaaggccgtcaccaagttcacctcctcctagg 538
|||||||||||||||||||||||| ||||| ||||
Sbjct: 250 caccaaggccgtcaccaagttcacttcctcttagg 284
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 281 bits (142), Expect = 5e-076
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 319 ggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 378
||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 11 ggcatatcctcctaggccatgtccatcatgaactccttcattaacgacatctttgagaag 70
Query: 379 ctggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacgtcccgc 438
|| || || ||| | ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 71 cttgctggggagtctgccaagctcgctcgctacaacaagaagcccaccatcacctcccgg 130
Query: 439 gagatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtctct 498
||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 131 gagatacagacctctgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctct 190
Query: 499 gagggcaccaaggccgtcaccaagttcacctcctcctaggct 540
|||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 191 gagggcaccaaggctgtcaccaagttcacatcctcttaggct 232
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 208 bits (105), Expect = 6e-054
Identities = 150/165 (90%)
Strand = Plus / Plus
Query: 373 gagaagctggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacg 432
|||||| ||||| | ||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 12 gagaagttggcctgtgagtccgccaagctcgcgaggtacaacaagaagcccaccatcacc 71
Query: 433 tcccgcgagatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgcc 492
||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 72 tccagggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgct 131
Query: 493 gtctctgagggcaccaaggccgtcaccaagttcacctcctcctag 537
||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 132 gtctccgagggcaccaaggctgtcaccaagttcacctcttcctag 176
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 194 bits (98), Expect = 9e-050
Identities = 153/170 (90%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 369 cttcgagaagctggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccat 428
||||||||| || |||| ||| ||||||||||||| |||| | |||||||||||||||
Sbjct: 11 cttcgagaaactttccggggagtccgccaagctcgcccgcttta-caagaagcccaccat 69
Query: 429 cacgtcccgcgagatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagca 488
||| ||| | ||||||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 70 cacctccagggagatccagacctccgtccgcctcgtcctccccggggaactcgccaagca 129
Query: 489 cgccgtctctgagggcaccaaggccgtcaccaagttcacctcctcctagg 538
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130 cgccgtctctgagggcaccaaggccgtcaccaagttcacctcctcttagg 179
>gb|CN815448.1|CN815448 HRO4509_G08_M15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G08_M15, mRNA sequence
Length = 639
Score = 34.2 bits (17), Expect = 0.20
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 554 tttgtaggcttctcttgtgttgatg 578
|||||| | ||||||||||||||||
Sbjct: 21 tttgtatgtttctcttgtgttgatg 45
>gb|CN820111.1|CN820111 HRO4411_C03_F05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_C03_F05, mRNA
sequence
Length = 450
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 698 ttgttgatcacttatgt 714
|||||||||||||||||
Sbjct: 244 ttgttgatcacttatgt 260
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2923
Number of Sequences: 8143
Number of extensions: 2923
Number of successful extensions: 839
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 20
length of query: 857
length of database: 4,702,463
effective HSP length: 16
effective length of query: 841
effective length of database: 4,572,175
effective search space: 3845199175
effective search space used: 3845199175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)