BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.280
(3445 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Aven... 238 3e-062
gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Aven... 145 3e-034
gb|CN818306.1|CN818306 HRO4460_A06_A12ZS5 Lib AA070E1X Aven... 145 3e-034
gb|CN821236.1|CN821236 HRO4423_A07_B13ZS5 Lib AA069E1X Aven... 141 5e-033
gb|CN816663.1|CN816663 HRO4523_D03_H05ZS5 Lib AA071E1X Aven... 133 1e-030
gb|CN816814.1|CN816814 HRO4525_B02_C03ZS5 Lib AA071E1X Aven... 133 1e-030
gb|CN820533.1|CN820533 HRO4413_E02_I03ZS5 Lib AA069E1X Aven... 133 1e-030
gb|CN821079.1|CN821079 HRO4427_C07_F13ZS5 Lib AA069E1X Aven... 82 4e-015
gb|CN815168.1|CN815168 HRO4506_F05_K10ZS5 Lib AA071E1X Aven... 78 6e-014
gb|CN815852.1|CN815852 HRO4511_B12_D23ZS5 Lib AA071E1X Aven... 56 2e-007
>gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G04_M07, mRNA sequence
Length = 630
Score = 238 bits (120), Expect = 3e-062
Identities = 231/268 (86%)
Strand = Plus / Plus
Query: 2202 tgcacattgacccttaccacagcgacaaggccgcggatatcctggtcaacttctttgaca 2261
||||||| || ||||||||||| |||||||| || |||||| |||||||||||||||| |
Sbjct: 37 tgcacatcgatccttaccacagtgacaaggctgcagatatcttggtcaacttctttgaga 96
Query: 2262 aatgcaaggcagatccgagctactgggacaagatctcacagggcggcctgcagagaatct 2321
| | |||||| || || | |||||||||||| || || | || ||||| ||||||| |
Sbjct: 97 agtccaaggcggacccaacctactgggacaaaatgtcggaaggaggcctcaagagaattt 156
Query: 2322 atgagaagtacacctggaagctctactccgagaggctgatgaccctgaccggcgtgtacg 2381
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || || |
Sbjct: 157 atgagaagtacacctggaagctgtactcggagaggctgatgaccctgaccggtgtatatg 216
Query: 2382 ggttctggaagtacgtgagcaacctggagaggcgcgagacccgccgctacatcgaaatgt 2441
| |||||||| |||||||| |||||||||||||| ||||| ||||||||| | || ||||
Sbjct: 217 gattctggaaatacgtgagtaacctggagaggcgtgagactcgccgctacctggagatgt 276
Query: 2442 tctacgccctgaagtaccgtagcctggc 2469
||||||| ||||||||||| ||||||||
Sbjct: 277 tctacgctctgaagtaccgcagcctggc 304
>gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H07_O13, mRNA sequence
Length = 449
Score = 145 bits (73), Expect = 3e-034
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 2864 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaa 2923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgccgaa 149
Query: 2924 agatgaggcagagatccaagtaggc 2948
||||||||||| |||| ||||||||
Sbjct: 150 agatgaggcagcgatctaagtaggc 174
>gb|CN818306.1|CN818306 HRO4460_A06_A12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_A06_A12, mRNA sequence
Length = 390
Score = 145 bits (73), Expect = 3e-034
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 2864 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaa 2923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 32 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgccgaa 91
Query: 2924 agatgaggcagagatccaagtaggc 2948
||||||||||| |||| ||||||||
Sbjct: 92 agatgaggcagcgatctaagtaggc 116
>gb|CN821236.1|CN821236 HRO4423_A07_B13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_A07_B13, mRNA
sequence
Length = 440
Score = 141 bits (71), Expect = 5e-033
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 2864 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaa 2923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 78 cgaccatgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgccgaa 137
Query: 2924 agatgaggcagagatccaagtag 2946
||||||||||| |||| ||||||
Sbjct: 138 agatgaggcagcgatctaagtag 160
Score = 36.2 bits (18), Expect = 0.20
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2816 ccgccgacgccgcaggaggaga 2837
|||||| |||||||||||||||
Sbjct: 16 ccgccgccgccgcaggaggaga 37
>gb|CN816663.1|CN816663 HRO4523_D03_H05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_D03_H05, mRNA sequence
Length = 708
Score = 133 bits (67), Expect = 1e-030
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct: 55 atgagggccaagtggaagaagaagaggatgaggaggctcaagaggaagcgccgaaagatg 114
Query: 2929 aggcagagatccaagtagg 2947
|||||||||||||||||||
Sbjct: 115 aggcagagatccaagtagg 133
>gb|CN816814.1|CN816814 HRO4525_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_B02_C03, mRNA sequence
Length = 633
Score = 133 bits (67), Expect = 1e-030
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct: 403 atgagggccaagtggaagaagaagaggatgaggaggctcaagaggaagcgccgaaagatg 462
Query: 2929 aggcagagatccaagtagg 2947
|||||||||||||||||||
Sbjct: 463 aggcagagatccaagtagg 481
>gb|CN820533.1|CN820533 HRO4413_E02_I03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E02_I03, mRNA
sequence
Length = 372
Score = 133 bits (67), Expect = 1e-030
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct: 76 atgagggccaagtggaagaagaagaggatgaggaggctcaagaggaagcgccgaaagatg 135
Query: 2929 aggcagagatccaagtagg 2947
|||||||||||||||||||
Sbjct: 136 aggcagagatccaagtagg 154
>gb|CN821079.1|CN821079 HRO4427_C07_F13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_C07_F13, mRNA
sequence
Length = 341
Score = 81.8 bits (41), Expect = 4e-015
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 2896 atgaggaggctcaagaggaagcgcagaaagatgaggcagagatccaagtaggc 2948
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct: 1 atgaggaggctcaagaggaagcgccgaaagatgaggcagcgatctaagtaggc 53
>gb|CN815168.1|CN815168 HRO4506_F05_K10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F05_K10, mRNA sequence
Length = 290
Score = 77.8 bits (39), Expect = 6e-014
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 2899 aggaggctcaagaggaagcgcagaaagatgaggcagagatccaagtaggca 2949
|||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 1 aggaggctcaagaggaagcgacgaaagatgaggcagcgatccaagtaggca 51
>gb|CN815852.1|CN815852 HRO4511_B12_D23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B12_D23, mRNA sequence
Length = 292
Score = 56.0 bits (28), Expect = 2e-007
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 2908 aagaggaagcgcagaaagatgaggcagagatccaagtagg 2947
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3 aagaggaagcgccgaaag-tgaggcagagatccaagtagg 41
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8491
Number of Sequences: 8143
Number of extensions: 8491
Number of successful extensions: 2415
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2400
Number of HSP's gapped (non-prelim): 13
length of query: 3445
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3428
effective length of database: 4,564,032
effective search space: 15645501696
effective search space used: 15645501696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)