BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.249
(684 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819385.1|CN819385 HRO4405_D04_G07ZS5 Lib AA069E1X Aven... 319 2e-087
gb|CN819555.1|CN819555 HRO4401_E07_I13ZS5 Lib AA069E1X Aven... 194 7e-050
gb|CN821066.1|CN821066 HRO4427_B06_D11ZS5 Lib AA069E1X Aven... 182 3e-046
gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Aven... 157 2e-038
gb|CN820486.1|CN820486 HRO4419_H07_P13ZS5 Lib AA069E1X Aven... 149 4e-036
gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Aven... 135 6e-032
gb|CN818853.1|CN818853 HRO4473_F02_XXXZS5 Lib AA070E1X Aven... 38 0.010
gb|CN817597.1|CN817597 HRO4463_E04_I07ZS5 Lib AA070E1X Aven... 32 0.61
gb|M21405.1|ASTSPGLBA Oat seed storage globulin mRNA, compl... 32 0.61
gb|J05485.1|ASTSSP12S A.sativa 12S globulin seed storage pr... 32 0.61
emb|X68648.1|AS12S A.sativa pseudogene for 12S seed globulin 32 0.61
emb|X17637.1|AS12SSP Oat gene for 12S seed storage protein 32 0.61
gb|CN815890.1|CN815890 HRO4511_F04_L07ZS5 Lib AA071E1X Aven... 30 2.4
gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Aven... 30 2.4
gb|CN818315.1|CN818315 HRO4457_A10_B19ZS5 Lib AA070E1X Aven... 30 2.4
gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Aven... 30 2.4
gb|CN820450.1|CN820450 HRO4419_E05_J09ZS5 Lib AA069E1X Aven... 30 2.4
dbj|E08573.1| cDNA encoding 12S globulin A2B of oats 30 2.4
emb|X76738.1|AS12SGLOB A.sativa (L) mRNA for 12S globulin (... 30 2.4
gb|AI978281.1|AI978281 CDO680.R Oat Etiolated Leaf cDNA Lib... 28 9.6
gb|CN814801.1|CN814801 HRO4502_F05_K10ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN815652.1|CN815652 HRO4514_A06_A12ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN816404.1|CN816404 HRO4520_D04_H08ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN816491.1|CN816491 HRO4521_D03_G05ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN816584.1|CN816584 HRO4522_D11_G22ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN816644.1|CN816644 HRO4523_B08_D15ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN816672.1|CN816672 HRO4523_D12_H23ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Aven... 28 9.6
gb|CN817459.1|CN817459 HRO4466_A08_B16ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN817968.1|CN817968 HRO4460_F11_K22ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN818045.1|CN818045 HRO4456_E02_I04ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN818198.1|CN818198 HRO4470_H10_P20ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN818510.1|CN818510 HRO4466_E11_J22ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN818725.1|CN818725 HRO4468_A10_A20ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN819139.1|CN819139 HRO4457_D09_H17ZS5 Lib AA070E1X Aven... 28 9.6
gb|CN820074.1|CN820074 HRO4410_G09_M18ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN820181.1|CN820181 HRO4412_A12_B24ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN820187.1|CN820187 HRO4412_B08_D16ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN820191.1|CN820191 HRO4412_C02_F04ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN820793.1|CN820793 HRO4414_H10_O20ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Aven... 28 9.6
gb|CN821657.1|CN821657 HRO4408_G05_N10ZS5 Lib AA069E1X Aven... 28 9.6
gb|AY038003.1| Avena sativa isolate Pc68LrkB1 sequence cont... 28 9.6
gb|AY038009.1| Avena sativa isolate Pc68LrkC1 sequence cont... 28 9.6
gb|AY038010.1| Avena sativa isolate Pc68LrkC2 sequence cont... 28 9.6
>gb|CN819385.1|CN819385 HRO4405_D04_G07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_D04_G07, mRNA
sequence
Length = 673
Score = 319 bits (161), Expect = 2e-087
Identities = 308/357 (86%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggtgtacatccttacagcgacggccagacccagtattgcga 233
|||||||||| |||||||||||||| |||| |||||||||||| || |||||||| || |
Sbjct: 361 actaggcagactccgacttggtgtagatccgtacagcgacggcaaggcccagtatcgcca 302
Query: 234 gggggaccaaaaactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagt 293
|||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 301 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 242
Query: 294 gcggctgcttggggggcgtgtacttcaccttggtgggtatcgtggctgcatcaatctcac 353
||||||||||||||| ||||| ||| ||||||||||||||| || || |||||||
Sbjct: 241 gcggctgcttgggggcaacatacttgaccctggtgggtatcgtggtggcgtcgatctcac 182
Query: 354 ccactaagtactcgtccatcattgcacgggcagtgctgctgtgccccacatcttcgaaat 413
| || |||||||||||||||| || ||||| || ||||||| |||||||| ||||| |
Sbjct: 181 caacatagtactcgtccatcatcgcccgggcggtcgtgctgtggcccacatcctcgaagt 122
Query: 414 catcggtagcatccttggcagtggaagacagcagaacatcatcgcctccagggtgatcct 473
| ||||| |||||||||||||| ||||||||||| ||||| || ||||||||||| || |
Sbjct: 121 cgtcggtcgcatccttggcagttgaagacagcaggacatcgtcacctccagggtggtcat 62
Query: 474 ccagaaacttggtcacattgtacaccttgccgccgatgacgagccagcagtcgtcct 530
| || |||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 61 cgaggaacttggtgacattgtacacctttccgccgatgatgagccagcagtcgtcct 5
Score = 28.2 bits (14), Expect = 9.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggt 195
|||| ||||| |||||||||||
Sbjct: 478 actaagcagactccgacttggt 457
>gb|CN819555.1|CN819555 HRO4401_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_E07_I13, mRNA
sequence
Length = 504
Score = 194 bits (98), Expect = 7e-050
Identities = 176/202 (87%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggtgtacatccttacagcgacggccagacccagtattgcga 233
|||||||||| |||||||||||||| |||| ||| ||||| || || |||||||| || |
Sbjct: 203 actaggcagactccgacttggtgtagatccgtacggcgacagcgaggcccagtatcgcca 144
Query: 234 gggggaccaaaaactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagt 293
|||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 143 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 84
Query: 294 gcggctgcttggggggcgtgtacttcaccttggtgggtatcgtggctgcatcaatctcac 353
|||||||||||||||||| |||||| ||||||||||||||||||| || || ||||| |
Sbjct: 83 gcggctgcttggggggcgcgtacttgaccttggtgggtatcgtggtggcgtcgatctcgc 24
Query: 354 ccactaagtactcgtccatcat 375
| || ||||||||||||||||
Sbjct: 23 cgacgtagtactcgtccatcat 2
>gb|CN821066.1|CN821066 HRO4427_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B06_D11, mRNA
sequence
Length = 420
Score = 182 bits (92), Expect = 3e-046
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggtgtacatccttacagcgacggccagacccagtattgcga 233
|||||||||| |||||||||||||| |||| ||| ||||| || || |||||||| || |
Sbjct: 174 actaggcagactccgacttggtgtagatccgtacggcgacagcgaggcccagtatcgcca 115
Query: 234 gggggaccaaaaactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagt 293
|||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 114 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 55
Query: 294 gcggctgcttggggggcgtgtacttcaccttggtgggtatcgtg 337
|||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 54 gcggctgcttggggggcgcgtacttgaccttggtgggtatcgtg 11
>gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C08_F15, mRNA
sequence
Length = 501
Score = 157 bits (79), Expect = 2e-038
Identities = 121/135 (89%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggtgtacatccttacagcgacggccagacccagtattgcga 233
|||||||||| |||||||||||||| |||| |||||||||||| || |||||||| || |
Sbjct: 166 actaggcagactccgacttggtgtagatccgtacagcgacggcaaggcccagtatcgcca 107
Query: 234 gggggaccaaaaactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagt 293
|||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 106 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 47
Query: 294 gcggctgcttggggg 308
|||||||||||||||
Sbjct: 46 gcggctgcttggggg 32
Score = 28.2 bits (14), Expect = 9.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 174 actaggcagattccgacttggt 195
|||| ||||| |||||||||||
Sbjct: 283 actaagcagactccgacttggt 262
>gb|CN820486.1|CN820486 HRO4419_H07_P13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_H07_P13, mRNA
sequence
Length = 546
Score = 149 bits (75), Expect = 4e-036
Identities = 207/251 (82%)
Strand = Plus / Minus
Query: 185 tccgacttggtgtacatccttacagcgacggccagacccagtattgcgagggggaccaaa 244
|||||||||||||||||||| || || |||||||| || || || || |||||||| |
Sbjct: 279 tccgacttggtgtacatcctaacggctacggccaggccaaggatggccagggggacaagg 220
Query: 245 aactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagtgcggctgcttg 304
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 219 aactggaggatcttgatgatgaactcaggggtcttgtcctggttgtagtgcggctgcttc 160
Query: 305 gggggcgtgtacttcaccttggtgggtatcgtggctgcatcaatctcacccactaagtac 364
|| || ||||||||| || ||| |||||||| | ||||| | ||||| | |||||
Sbjct: 159 ggcggggtgtacttcgtctgggtaggtatcgtcgacgcatccacatcaccaatatagtac 100
Query: 365 tcgtccatcattgcacgggcagtgctgctgtgccccacatcttcgaaatcatcggtagca 424
|| |||| ||| || |||||||| ||||||| || ||||| || || ||||| || |||
Sbjct: 99 tcatccagcatcgcgcgggcagtcgtgctgtggccgacatcctcaaagtcatcagtcgca 40
Query: 425 tccttggcagt 435
|||||||||||
Sbjct: 39 tccttggcagt 29
>gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E04_J07, mRNA sequence
Length = 805
Score = 135 bits (68), Expect = 6e-032
Identities = 131/152 (86%)
Strand = Plus / Minus
Query: 185 tccgacttggtgtacatccttacagcgacggccagacccagtattgcgagggggaccaaa 244
|||||||||||||||||||| || || |||||||| || || || || |||||||| |
Sbjct: 665 tccgacttggtgtacatcctaacggctacggccaggccaaggatggccagggggacaagg 606
Query: 245 aactggaggatcttgatgacgaactcctgggtcttgtcctggttgtagtgcggctgcttg 304
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 605 aactggaggatcttgatgatgaactcaggggtcttgtcctggttgtagtgcggctgcttc 546
Query: 305 gggggcgtgtacttcaccttggtgggtatcgt 336
|| || ||||||||| || ||| ||||||||
Sbjct: 545 ggcggggtgtacttcgtctgggtaggtatcgt 514
>gb|CN818853.1|CN818853 HRO4473_F02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_F02_XXX, mRNA sequence
Length = 762
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 27 aaaaatagaagtgatttta 45
|||||||||||||||||||
Sbjct: 488 aaaaatagaagtgatttta 506
>gb|CN817597.1|CN817597 HRO4463_E04_I07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_E04_I07, mRNA sequence
Length = 792
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 gaggatcttgatgacg 265
||||||||||||||||
Sbjct: 505 gaggatcttgatgacg 520
>gb|M21405.1|ASTSPGLBA Oat seed storage globulin mRNA, complete cds
Length = 1805
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 cttggtgtacatcctt 205
||||||||||||||||
Sbjct: 453 cttggtgtacatcctt 468
>gb|J05485.1|ASTSSP12S A.sativa 12S globulin seed storage protein gene, complete cds
Length = 3341
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 cttggtgtacatcctt 205
||||||||||||||||
Sbjct: 1291 cttggtgtacatcctt 1306
>emb|X68648.1|AS12S A.sativa pseudogene for 12S seed globulin
Length = 2788
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 cttggtgtacatcctt 205
||||||||||||||||
Sbjct: 931 cttggtgtacatcctt 946
>emb|X17637.1|AS12SSP Oat gene for 12S seed storage protein
Length = 2387
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 190 cttggtgtacatcctt 205
||||||||||||||||
Sbjct: 692 cttggtgtacatcctt 707
>gb|CN815890.1|CN815890 HRO4511_F04_L07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_F04_L07, mRNA sequence
Length = 333
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 atgttatgtttgcag 158
|||||||||||||||
Sbjct: 287 atgttatgtttgcag 301
>gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H06_O11, mRNA sequence
Length = 851
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 gacgaactcctgggt 276
|||||||||||||||
Sbjct: 523 gacgaactcctgggt 509
>gb|CN818315.1|CN818315 HRO4457_A10_B19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_A10_B19, mRNA sequence
Length = 532
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 tgatgttatgtttgc 156
|||||||||||||||
Sbjct: 438 tgatgttatgtttgc 452
>gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E10_I20, mRNA sequence
Length = 836
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 gacgaactcctgggt 276
|||||||||||||||
Sbjct: 433 gacgaactcctgggt 419
>gb|CN820450.1|CN820450 HRO4419_E05_J09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_E05_J09, mRNA
sequence
Length = 469
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 524 tcgtccttggtgttg 538
|||||||||||||||
Sbjct: 96 tcgtccttggtgttg 82
>dbj|E08573.1| cDNA encoding 12S globulin A2B of oats
Length = 1685
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 ttggtgtacatcctt 205
|||||||||||||||
Sbjct: 344 ttggtgtacatcctt 358
>emb|X76738.1|AS12SGLOB A.sativa (L) mRNA for 12S globulin (1685 bp)
Length = 1685
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 ttggtgtacatcctt 205
|||||||||||||||
Sbjct: 344 ttggtgtacatcctt 358
>gb|AI978281.1|AI978281 CDO680.R Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO680, mRNA sequence
Length = 298
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 532 ggtgttgtgcttgg 545
||||||||||||||
Sbjct: 199 ggtgttgtgcttgg 212
>gb|CN814801.1|CN814801 HRO4502_F05_K10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_F05_K10, mRNA sequence
Length = 848
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 530 ttggtgttgtgctt 543
||||||||||||||
Sbjct: 252 ttggtgttgtgctt 265
>gb|CN815652.1|CN815652 HRO4514_A06_A12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A06_A12, mRNA sequence
Length = 825
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 582 tcctcgtcttcctc 595
||||||||||||||
Sbjct: 72 tcctcgtcttcctc 59
>gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C08_E16, mRNA sequence
Length = 586
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 586 cgtcttcctctgtt 599
||||||||||||||
Sbjct: 64 cgtcttcctctgtt 51
>gb|CN816404.1|CN816404 HRO4520_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_D04_H08, mRNA sequence
Length = 726
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 499 cttgccgccgatga 512
||||||||||||||
Sbjct: 462 cttgccgccgatga 449
>gb|CN816491.1|CN816491 HRO4521_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_D03_G05, mRNA sequence
Length = 556
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 383 gcagtgctgctgtg 396
||||||||||||||
Sbjct: 511 gcagtgctgctgtg 524
>gb|CN816584.1|CN816584 HRO4522_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_D11_G22, mRNA sequence
Length = 447
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cagcgttgatgaca 169
||||||||||||||
Sbjct: 33 cagcgttgatgaca 46
>gb|CN816644.1|CN816644 HRO4523_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_B08_D15, mRNA sequence
Length = 778
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 gtggatgatgttat 150
||||||||||||||
Sbjct: 305 gtggatgatgttat 292
>gb|CN816672.1|CN816672 HRO4523_D12_H23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_D12_H23, mRNA sequence
Length = 874
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 cgacggccagaccc 223
||||||||||||||
Sbjct: 668 cgacggccagaccc 655
>gb|CN817023.1|CN817023 HRO4527_D07_H13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D07_H13, mRNA sequence
Length = 651
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 420 tagcatccttggca 433
||||||||||||||
Sbjct: 571 tagcatccttggca 584
>gb|CN817459.1|CN817459 HRO4466_A08_B16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_A08_B16, mRNA sequence
Length = 471
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 gtggatgatgttat 150
||||||||||||||
Sbjct: 258 gtggatgatgttat 245
>gb|CN817968.1|CN817968 HRO4460_F11_K22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F11_K22, mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 328 gggtatcgtggctg 341
||||||||||||||
Sbjct: 65 gggtatcgtggctg 52
>gb|CN818045.1|CN818045 HRO4456_E02_I04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_E02_I04, mRNA sequence
Length = 597
Score = 28.2 bits (14), Expect = 9.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 581 atcctcgtcttcctctgt 598
|||||| |||||||||||
Sbjct: 439 atcctcctcttcctctgt 456
>gb|CN818198.1|CN818198 HRO4470_H10_P20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_H10_P20, mRNA sequence
Length = 610
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 agtattgcgagggg 237
||||||||||||||
Sbjct: 259 agtattgcgagggg 246
>gb|CN818510.1|CN818510 HRO4466_E11_J22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_E11_J22, mRNA sequence
Length = 480
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 554 tcgagggtgtacac 567
||||||||||||||
Sbjct: 322 tcgagggtgtacac 335
>gb|CN818725.1|CN818725 HRO4468_A10_A20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A10_A20, mRNA sequence
Length = 297
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 ctcaagtttcagaa 94
||||||||||||||
Sbjct: 262 ctcaagtttcagaa 275
>gb|CN819139.1|CN819139 HRO4457_D09_H17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_D09_H17, mRNA sequence
Length = 293
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 530 ttggtgttgtgctt 543
||||||||||||||
Sbjct: 237 ttggtgttgtgctt 250
>gb|CN820074.1|CN820074 HRO4410_G09_M18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G09_M18, mRNA
sequence
Length = 387
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 355 cactaagtactcgt 368
||||||||||||||
Sbjct: 346 cactaagtactcgt 333
>gb|CN820181.1|CN820181 HRO4412_A12_B24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_A12_B24, mRNA
sequence
Length = 416
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 441 acagcagaacatca 454
||||||||||||||
Sbjct: 247 acagcagaacatca 234
>gb|CN820187.1|CN820187 HRO4412_B08_D16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B08_D16, mRNA
sequence
Length = 733
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 463 agggtgatcctcca 476
||||||||||||||
Sbjct: 286 agggtgatcctcca 273
>gb|CN820191.1|CN820191 HRO4412_C02_F04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_C02_F04, mRNA
sequence
Length = 609
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cacgacagcaaaga 80
||||||||||||||
Sbjct: 497 cacgacagcaaaga 484
>gb|CN820793.1|CN820793 HRO4414_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_H10_O20, mRNA
sequence
Length = 524
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 530 ttggtgttgtgctt 543
||||||||||||||
Sbjct: 432 ttggtgttgtgctt 445
>gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D09_H18, mRNA
sequence
Length = 657
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 426 ccttggcagtggaa 439
||||||||||||||
Sbjct: 422 ccttggcagtggaa 409
>gb|CN821657.1|CN821657 HRO4408_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_G05_N10, mRNA
sequence
Length = 786
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 tgatgttatgtttg 155
||||||||||||||
Sbjct: 742 tgatgttatgtttg 755
>gb|AY038003.1| Avena sativa isolate Pc68LrkB1 sequence containing transposon and
repetitive DNA linked to receptor kinase gene
Length = 3596
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 tgatgttatgtttg 155
||||||||||||||
Sbjct: 818 tgatgttatgtttg 831
>gb|AY038009.1| Avena sativa isolate Pc68LrkC1 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 3605
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 tgatgttatgtttg 155
||||||||||||||
Sbjct: 818 tgatgttatgtttg 831
>gb|AY038010.1| Avena sativa isolate Pc68LrkC2 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 2011
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 tgatgttatgtttg 155
||||||||||||||
Sbjct: 827 tgatgttatgtttg 840
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1930
Number of Sequences: 8143
Number of extensions: 1930
Number of successful extensions: 473
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 64
length of query: 684
length of database: 4,702,463
effective HSP length: 16
effective length of query: 668
effective length of database: 4,572,175
effective search space: 3054212900
effective search space used: 3054212900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)