BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.211
(777 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 379 e-105
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 347 9e-096
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 347 9e-096
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 335 3e-092
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 329 2e-090
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 280 2e-075
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 240 2e-063
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 194 8e-050
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 165 7e-041
gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Aven... 38 0.011
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 379 bits (191), Expect = e-105
Identities = 245/263 (93%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 293 gtgaacttggtgacggccttggtgccctctgacacggcgtgcttggcgagctcgccgggg 234
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 233 aggacaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtag 174
Query: 367 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 426
|||||||||||||| ||||| | || || ||||| ||||||||||||||||||||||||
Sbjct: 173 cgcgccagcttggcggcctcgccagcgagtttctcaaagatgtcgttgatgaaggagttc 114
Query: 427 atgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcaccttg 486
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 113 atgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagcaccttg 54
Query: 487 aagatgtagatcttgtacgtctc 509
||||||||||||||||| |||||
Sbjct: 53 aagatgtagatcttgtaggtctc 31
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 347 bits (175), Expect = 9e-096
Identities = 241/263 (91%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| || |||
Sbjct: 278 gtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcgagctcccctggg 219
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 218 aggacgaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtag 159
Query: 367 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 426
|| ||||||||||| | ||| | || |||||||||||||||||||||||||||||||||
Sbjct: 158 cgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttgatgaaggagttc 99
Query: 427 atgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcaccttg 486
|||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 98 atgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttgaggaccttg 39
Query: 487 aagatgtagatcttgtacgtctc 509
||||||||||||||||| |||||
Sbjct: 38 aagatgtagatcttgtaggtctc 16
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 347 bits (175), Expect = 9e-096
Identities = 259/287 (90%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 306 gtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgagctcgccgggg 247
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
|||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 246 aggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggcttcttgttgtag 187
Query: 367 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 426
|| || |||||||| | |||| | || |||||||| ||||||||||| ||||||||||||
Sbjct: 186 cgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaatgaaggagttc 127
Query: 427 atgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcaccttg 486
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct: 126 atgatggacatggccttggaggatatgccgatgtccgggtgcacctgcttgagcaccttg 67
Query: 487 aagatgtagatcttgtacgtctccaccgacttctttgccttcttctt 533
||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 66 aagatgtagatcttgtaggtctcgacgctcttctttgccttcttctt 20
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 335 bits (169), Expect = 3e-092
Identities = 265/297 (89%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
|||||||| ||||| || |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 346 gtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgagctccccgggg 287
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 286 aggacaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtac 227
Query: 367 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 426
| ||| ||||| |||| ||| | || || ||||||||||||||||||||||||||||||
Sbjct: 226 ctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgatgaaggagttc 167
Query: 427 atgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcaccttg 486
|||||||||||||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 166 atgatggacatggccttggaggagatgccgatgtcgggatgcacctgcttcaggaccttg 107
Query: 487 aagatgtagatcttgtacgtctccaccgacttctttgccttcttcttccccttcttc 543
||||||||||||||||| ||||| || |||||| || |||||||| |||||||||
Sbjct: 106 aagatgtagatcttgtatgtctctacgctcttcttggctttcttcttgcccttcttc 50
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 329 bits (166), Expect = 2e-090
Identities = 262/294 (89%)
Strand = Plus / Minus
Query: 250 aacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccggggagg 309
||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 331 aactttgtgacagccttggtgccctcggagaccgcgtgcttggcaagctcgccggggagg 272
Query: 310 acgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtaccgc 369
|| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||
Sbjct: 271 acaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttatagcgg 212
Query: 370 gccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttcatg 429
|| |||||||| | ||| | || || ||||| |||||||||||||||||||||||||||
Sbjct: 211 gcgagcttggcagactcgccagcgagtttctcaaagatgtcgttgatgaaggagttcatg 152
Query: 430 atggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcaccttgaag 489
||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 151 atggacatggccttggaggagatgccgatgtccgggtgcacctgcttgaggaccttgaag 92
Query: 490 atgtagatcttgtacgtctccaccgacttctttgccttcttcttccccttcttc 543
|||||||||||||| ||||| || |||||| ||||||||||| |||||||||
Sbjct: 91 atgtagatcttgtaggtctcgacgctcttcttcgccttcttcttgcccttcttc 38
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 280 bits (141), Expect = 2e-075
Identities = 234/265 (88%)
Strand = Plus / Minus
Query: 246 agtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccggg 305
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 274 agtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgagctcccctgg 215
Query: 306 gaggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgta 365
|| || || || || || ||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 214 aagcacaagacgaacagaagtctggatctccctggaggtgatggtgggcttcttgttgta 155
Query: 366 ccgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagtt 425
|| ||| |||||||| | ||| | ||||||||||| ||||| |||||||||||||||||
Sbjct: 154 cctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttgatgaaggagtt 95
Query: 426 catgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagcacctt 485
||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || |||||
Sbjct: 94 catgatggacatggccttggaggagatgccgatgtcggggtggacctgcttgaggacctt 35
Query: 486 gaagatgtagatcttgtacgtctcc 510
|||||||||||||||||| ||||||
Sbjct: 34 gaagatgtagatcttgtaggtctcc 10
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 240 bits (121), Expect = 2e-063
Identities = 187/209 (89%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 219 gtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgagctcgccgggg 160
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
|||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 159 aggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggcttcttgttgtag 100
Query: 367 cgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaaggagttc 426
|| || |||||||| | |||| | || |||||||| ||||||||||| ||||||||||||
Sbjct: 99 cgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaatgaaggagttc 40
Query: 427 atgatggacatggccttggacgagatgcc 455
|||||||||||||||| ||| || |||||
Sbjct: 39 atgatggacatggcctaggaggatatgcc 11
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 194 bits (98), Expect = 8e-050
Identities = 125/134 (93%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 166 gtgaacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccgggg 107
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgttgtac 366
||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||
Sbjct: 106 aggacgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtac 47
Query: 367 cgcgccagcttggc 380
| ||| ||||||||
Sbjct: 46 ctcgcgagcttggc 33
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 165 bits (83), Expect = 7e-041
Identities = 107/115 (93%)
Strand = Plus / Minus
Query: 247 gtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcgccgggg 306
||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 168 gtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgagttccccgggg 109
Query: 307 aggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttgt 361
||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||
Sbjct: 108 aggacgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgt 54
>gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C08_E15, mRNA
sequence
Length = 708
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 759 ggacgaggttgcctcgtgc 777
|||||||||||||||||||
Sbjct: 36 ggacgaggttgcctcgtgc 18
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2195
Number of Sequences: 8143
Number of extensions: 2195
Number of successful extensions: 565
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 15
length of query: 777
length of database: 4,702,463
effective HSP length: 16
effective length of query: 761
effective length of database: 4,572,175
effective search space: 3479425175
effective search space used: 3479425175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)