BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.203
(959 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 161 1e-039
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 133 3e-031
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 44 2e-004
dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-ph... 38 0.014
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 161 bits (81), Expect = 1e-039
Identities = 158/183 (86%), Gaps = 3/183 (1%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggca 372
||||||| |||||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 183 tgtagccgggcgggacggcgcatccgcagtcgttgacgagcaggctgagcgcgagcggca 124
Query: 373 cgtagacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcgg 432
|||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 123 cgtagagggagaggtcgagcaccttggccttgatggcggtgcagaggcacaccgccgcgg 64
Query: 433 agagcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgca 492
||| ||||||| ||||| |||||||| |||||||| ||| ||| |||||||| |||||
Sbjct: 63 tgaggccggcgacgccctgcacgagcgagcagcacttgaccttgctgtcgccgatgtgca 4
Query: 493 cct 495
|||
Sbjct: 3 cct 1
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 133 bits (67), Expect = 3e-031
Identities = 126/145 (86%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggca 372
||||||| |||||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 145 tgtagccgggcgggacggcgcatccgcagtcgttgacgagcaggctgagcgcgagcggca 86
Query: 373 cgtagacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcgg 432
|||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 85 cgtagagggagaggtcgagcaccttggccttgatggcggtgcagaggcacaccgccgcgg 26
Query: 433 agagcccggcgatgcccttcacgag 457
||| ||||||| ||||| ||||||
Sbjct: 25 tgaggccggcgacgccctgcacgag 1
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 396 ttggccttgatggcggtgcaaaggca 421
|||||||||||||||||||| |||||
Sbjct: 347 ttggccttgatggcggtgcagaggca 322
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 396 ttggccttgatggcggtgcaaaggca 421
|||||||||||||||||||| |||||
Sbjct: 51 ttggccttgatggcggtgcagaggca 26
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 396 ttggccttgatggcggtgcaaaggca 421
|||||||||||||||||||| |||||
Sbjct: 193 ttggccttgatggcggtgcagaggca 168
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 396 ttggccttgatggcggtgcaaaggca 421
|||||||||||||||||||| |||||
Sbjct: 41 ttggccttgatggcggtgcagaggca 16
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 396 ttggccttgatggcggtgcaaaggca 421
|||||||||||||||||||| |||||
Sbjct: 53 ttggccttgatggcggtgcagaggca 28
>dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-phosphate synthase,
complete cds
Length = 1936
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 383 gatgtcgagcaccttggcc 401
|||||||||||||||||||
Sbjct: 544 gatgtcgagcaccttggcc 526
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1625
Number of Sequences: 8143
Number of extensions: 1625
Number of successful extensions: 467
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 9
length of query: 959
length of database: 4,702,463
effective HSP length: 16
effective length of query: 943
effective length of database: 4,572,175
effective search space: 4311561025
effective search space used: 4311561025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)