BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820761.1|CN820761 HRO4414_D12_G24ZS5 Lib AA069E1X Aven... 234 1e-061
gb|CN815951.1|CN815951 HRO4515_C06_F11ZS5 Lib AA071E1X Aven... 184 9e-047
gb|CN815101.1|CN815101 HRO4505_H05_O09ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN820658.1|CN820658 HRO4415_H09_P17ZS5 Lib AA069E1X Aven... 34 0.20
gb|CN820977.1|CN820977 HRO4422_B04_C08ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN820761.1|CN820761 HRO4414_D12_G24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_D12_G24, mRNA
sequence
Length = 649
Score = 234 bits (118), Expect = 1e-061
Identities = 286/342 (83%)
Strand = Plus / Minus
Query: 379 tcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgactt 438
|||| |||||||||||||| ||||||| ||||| ||||||||||||| || ||| ||
Sbjct: 359 tcagtacattgcagatgtaacctcagcaacttcagttacaacttggttgtattccttctg 300
Query: 439 cagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagac 498
|||||| ||||||| |||| |||||| |||||||||| ||| || |||| |||| ||
Sbjct: 299 cagtttctccttcaactcttcactgatctcccccttggctggcttcgtcatgaccagtac 240
Query: 499 gcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacata 558
||| ||||| |||||||| || || || || || ||||| ||||||||||| | |||||
Sbjct: 239 gcagcaagtaggcctcttggtagtcccagcagtagcaagctcctcttttgagtgcacata 180
Query: 559 tacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagg 618
|| ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct: 179 tatataaggaacattagcttcctcacatagtatgggaagatgtgtaatcacatcgatagg 120
Query: 619 agaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactac 678
||| || |||||||| || || ||||| ||||||||||| || || |||||||| || ||
Sbjct: 119 agagatgtttccagcaattacgcacaaccctttgttcccacgacggatgctcttaaccac 60
Query: 679 ctctttgactccgcgcttgaggcacttcgcctcggaggctcg 720
||| ||||| |||||||| |||||||| ||||| || |||||
Sbjct: 59 ctccttgaccccgcgcttcaggcacttggcctccgaagctcg 18
>gb|CN815951.1|CN815951 HRO4515_C06_F11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_C06_F11, mRNA sequence
Length = 433
Score = 184 bits (93), Expect = 9e-047
Identities = 228/273 (83%)
Strand = Plus / Minus
Query: 379 tcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgactt 438
|||| |||||||||||||| ||||||| ||||| ||||||||||||| || ||| ||
Sbjct: 291 tcagtacattgcagatgtaacctcagcaacttcagttacaacttggttgtattccttctg 232
Query: 439 cagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagac 498
|||||| ||||||| |||| |||||| |||||||||| ||| || |||| |||| ||
Sbjct: 231 cagtttctccttcaactcttcactgatctcccccttggctggcttcgtcatgaccagtac 172
Query: 499 gcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacata 558
||| ||||| |||||||| || || || || || ||||| ||||||||||| | |||||
Sbjct: 171 gcagcaagtaggcctcttggtagtcccagcagtagcaagctcctcttttgagtgcacata 112
Query: 559 tacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagg 618
|| ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct: 111 tatataaggaacattagcttcctcacatagtatgggaagatgtgtaatcacatcgatagg 52
Query: 619 agaaatatttccagcgatcacacacaatccttt 651
||| || |||||||| || || ||||| |||||
Sbjct: 51 agagatgtttccagcaattacgcacaacccttt 19
>gb|CN815101.1|CN815101 HRO4505_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H05_O09, mRNA sequence
Length = 624
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 137 gagatctgacaacacaa 153
|||||||||||||||||
Sbjct: 583 gagatctgacaacacaa 567
>gb|CN820658.1|CN820658 HRO4415_H09_P17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H09_P17, mRNA
sequence
Length = 726
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 822 tccccatcgccgccgcc 838
|||||||||||||||||
Sbjct: 66 tccccatcgccgccgcc 82
>gb|CN820977.1|CN820977 HRO4422_B04_C08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B04_C08, mRNA
sequence
Length = 434
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 137 gagatctgacaacacaa 153
|||||||||||||||||
Sbjct: 310 gagatctgacaacacaa 294
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2109
Number of Sequences: 8143
Number of extensions: 2109
Number of successful extensions: 653
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 5
length of query: 878
length of database: 4,702,463
effective HSP length: 16
effective length of query: 862
effective length of database: 4,572,175
effective search space: 3941214850
effective search space used: 3941214850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)