BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.134
(674 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 387 e-108
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 379 e-105
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 375 e-104
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 363 e-100
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 297 7e-081
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 274 1e-073
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 254 9e-068
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 168 4e-042
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 157 2e-038
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 387 bits (195), Expect = e-108
Identities = 258/279 (92%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
||||||||||||| ||||| || || |||||||| || || || || |||||||||||||
Sbjct: 289 cctaagaggatgtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcga 230
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
|||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 229 gctcccctgggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggct 170
Query: 280 tcttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttga 339
|||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 169 tcttgttgtagcgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttga 110
Query: 340 tgaaggagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgct 399
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 109 tgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgct 50
Query: 400 tgagcaccttgaagatgtagatcttgtacgtctcgacgc 438
|||| ||||||||||||||||||||||| ||||||||||
Sbjct: 49 tgaggaccttgaagatgtagatcttgtaggtctcgacgc 11
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 379 bits (191), Expect = e-105
Identities = 257/279 (92%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
||||||||||||||||||| || || |||||||| || ||||| || ||||||||||| |
Sbjct: 345 cctaagaggatgtaaactttgtgacagccttggtgccctcggagaccgcgtgcttggcaa 286
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 285 gctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggct 226
Query: 280 tcttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttga 339
||||||| ||||||||||||||||| | |||| | ||||| ||||| |||||||||||||
Sbjct: 225 tcttgttatagcgggcgagcttggcagactcgccagcgagtttctcaaagatgtcgttga 166
Query: 340 tgaaggagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgct 399
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 165 tgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgct 106
Query: 400 tgagcaccttgaagatgtagatcttgtacgtctcgacgc 438
|||| ||||||||||||||||||||||| ||||||||||
Sbjct: 105 tgaggaccttgaagatgtagatcttgtaggtctcgacgc 67
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 375 bits (189), Expect = e-104
Identities = 246/265 (92%)
Strand = Plus / Minus
Query: 174 aacttggtaaccgccttggtcccttcggatacggcgtgcttggcgagctcgccggggagg 233
|||||||| || |||||||| || || || ||||||||||||||||||||||||||||||
Sbjct: 290 aacttggtgacggccttggtgccctctgacacggcgtgcttggcgagctcgccggggagg 231
Query: 234 acgaggcgcaccgaggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgg 293
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 acaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgc 171
Query: 294 gcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgatgaaggagttcatg 353
|| ||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 170 gccagcttggcggcctcgccagcgagtttctcaaagatgtcgttgatgaaggagttcatg 111
Query: 354 atggacatggccttggacgagatgccaatgtccgggtgcacctgcttgagcaccttgaag 413
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 110 atggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagcaccttgaag 51
Query: 414 atgtagatcttgtacgtctcgacgc 438
|||||||||||||| ||||||||||
Sbjct: 50 atgtagatcttgtaggtctcgacgc 26
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 363 bits (183), Expect = e-100
Identities = 255/279 (91%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
||||||||||||| |||||||| || |||||||| || || || || |||||||||||||
Sbjct: 317 cctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcga 258
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 257 gctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggct 198
Query: 280 tcttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttga 339
||||||||||||| ||||||||||| | ||| | || |||||||| ||||||||||| |
Sbjct: 197 tcttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaa 138
Query: 340 tgaaggagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgct 399
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 137 tgaaggagttcatgatggacatggccttggaggatatgccgatgtccgggtgcacctgct 78
Query: 400 tgagcaccttgaagatgtagatcttgtacgtctcgacgc 438
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 77 tgagcaccttgaagatgtagatcttgtaggtctcgacgc 39
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 297 bits (150), Expect = 7e-081
Identities = 246/278 (88%)
Strand = Plus / Minus
Query: 161 ctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcgag 220
|||||| || || ||||| || || |||||||| || ||||| ||||| |||||||||||
Sbjct: 356 ctaagacgaggtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgag 297
Query: 221 ctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggctt 280
||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 296 ctccccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 237
Query: 281 cttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttgat 340
||||||||| | || ||||| || | |||| | ||||| ||||||||||||||||||||
Sbjct: 236 cttgttgtacctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgat 177
Query: 341 gaaggagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgctt 400
|||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct: 176 gaaggagttcatgatggacatggccttggaggagatgccgatgtcgggatgcacctgctt 117
Query: 401 gagcaccttgaagatgtagatcttgtacgtctcgacgc 438
|| ||||||||||||||||||||||| ||||| ||||
Sbjct: 116 caggaccttgaagatgtagatcttgtatgtctctacgc 79
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 274 bits (138), Expect = 1e-073
Identities = 240/274 (87%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
|||||||||| || |||||||| || |||||||| || || || ||||||||||||||||
Sbjct: 284 cctaagaggaagtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcga 225
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
|||| || || || || || || || || ||||||||||||| |||||||||||||||||
Sbjct: 224 gctcccctggaagcacaagacgaacagaagtctggatctccctggaggtgatggtgggct 165
Query: 280 tcttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttga 339
|||||||||| | ||||||||||| | |||| | || |||||||| ||||| |||||||
Sbjct: 164 tcttgttgtacctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttga 105
Query: 340 tgaaggagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgct 399
||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct: 104 tgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgct 45
Query: 400 tgagcaccttgaagatgtagatcttgtacgtctc 433
|||| ||||||||||||||||||||||| |||||
Sbjct: 44 tgaggaccttgaagatgtagatcttgtaggtctc 11
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 254 bits (128), Expect = 9e-068
Identities = 197/220 (89%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
||||||||||||| |||||||| || |||||||| || || || || |||||||||||||
Sbjct: 230 cctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcga 171
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 170 gctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggct 111
Query: 280 tcttgttgtagcgggcgagcttggcggcctcggcggcgagcttctcgaagatgtcgttga 339
||||||||||||| ||||||||||| | ||| | || |||||||| ||||||||||| |
Sbjct: 110 tcttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaa 51
Query: 340 tgaaggagttcatgatggacatggccttggacgagatgcc 379
||||||||||||||||||||||||||| ||| || |||||
Sbjct: 50 tgaaggagttcatgatggacatggcctaggaggatatgcc 11
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 168 bits (85), Expect = 4e-042
Identities = 121/133 (90%)
Strand = Plus / Minus
Query: 174 aacttggtaaccgccttggtcccttcggatacggcgtgcttggcgagctcgccggggagg 233
|||||||| || |||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 163 aacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccggggagg 104
Query: 234 acgaggcgcaccgaggtctggatctcccgggaggtgatggtgggcttcttgttgtagcgg 293
|||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 103 acgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtacctc 44
Query: 294 gcgagcttggcgg 306
|||||||||||||
Sbjct: 43 gcgagcttggcgg 31
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 157 bits (79), Expect = 2e-038
Identities = 131/147 (89%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 160 cctaagaggatgtaaacttggtaaccgccttggtcccttcggatacggcgtgcttggcga 219
|||||||||| || |||||||| || |||||||| || || || ||||||||||||||||
Sbjct: 179 cctaagaggaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcga 120
Query: 220 gctcgccggggaggacgaggcgcaccgaggtctggatctcccgggaggtgatggtgggct 279
| || ||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 119 gttccccggggaggacgaggcggacggaggtctggatctccctggaggtgatggtgggct 60
Query: 280 tcttgttgtagcgggcgagcttggcgg 306
||||| | ||||||||||||||||||
Sbjct: 59 tcttg-taaagcgggcgagcttggcgg 34
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1580
Number of Sequences: 8143
Number of extensions: 1580
Number of successful extensions: 428
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 15
length of query: 674
length of database: 4,702,463
effective HSP length: 16
effective length of query: 658
effective length of database: 4,572,175
effective search space: 3008491150
effective search space used: 3008491150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)