BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.12
         (694 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817060.1|CN817060  HRO4527_G09_N17ZS5 Lib AA071E1X Aven...   387   e-108
gb|CN820741.1|CN820741  HRO4414_B07_C14ZS5 Lib AA069E1X Aven...   375   e-104
gb|CN821624.1|CN821624  HRO4408_D06_H12ZS5 Lib AA069E1X Aven...   375   e-104
gb|CN815219.1|CN815219  HRO4507_C01_F01ZS5 Lib AA071E1X Aven...   369   e-102
gb|CN816090.1|CN816090  HRO4516_H02_P04ZS5 Lib AA071E1X Aven...   353   1e-097
gb|CN815929.1|CN815929  HRO4515_A08_B15ZS5 Lib AA071E1X Aven...   337   8e-093
gb|CN817108.1|CN817108  HRO4528_C10_F20ZS5 Lib AA071E1X Aven...   276   2e-074
gb|CN815430.1|CN815430  HRO4509_F01_K01ZS5 Lib AA071E1X Aven...   155   6e-038
gb|CN816143.1|CN816143  HRO4517_E01_I01ZS5 Lib AA071E1X Aven...   137   1e-032
gb|CN816077.1|CN816077  HRO4516_F10_L20ZS5 Lib AA071E1X Aven...    36   0.040
gb|CN819828.1|CN819828  HRO4404_E08_J16ZS5 Lib AA069E1X Aven...    36   0.040
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_G09_N17, mRNA sequence
          Length = 412

 Score =  387 bits (195), Expect = e-108
 Identities = 261/283 (92%)
 Strand = Plus / Minus

                                                                       
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
           |||||||| |||||||||||||||||||| || || ||||||||||||||||||||||| 
Sbjct: 293 gtgaacttggtgacggccttggtgccctctgacacggcgtgcttggcgagctcgccgggg 234

                                                                       
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
           ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 233 aggacaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtag 174

                                                                       
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
           ||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 173 cgcgccagcttggcggcctcgccagcgagtttctcaaagatgtcgttgatgaaggagttc 114

                                                                       
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
           |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 113 atgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagcaccttg 54

                                                      
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttct 475
           ||||||||||||||||||||||| ||   ||||||||||||||
Sbjct: 53  aagatgtagatcttgtaggtctcgacgctcttcttcgccttct 11
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
           sequence
          Length = 454

 Score =  375 bits (189), Expect = e-104
 Identities = 252/273 (92%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctaagaggatgtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcgag 229

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||| || || ||||| ||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 228 ctcccctgggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggctt 169

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           |||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 168 cttgttgtagcgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttgat 109

                                                                       
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
           |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 108 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 49

                                            
Query: 423 cagcaccttgaagatgtagatcttgtaggtctc 455
            || |||||||||||||||||||||||||||||
Sbjct: 48  gaggaccttgaagatgtagatcttgtaggtctc 16
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
           sequence
          Length = 415

 Score =  375 bits (189), Expect = e-104
 Identities = 270/297 (90%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 316 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 257

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 256 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 197

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           |||||||||||| || |||||||||| ||| || || |||||||| ||||||||||| ||
Sbjct: 196 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 137

                                                                       
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
           |||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 136 gaaggagttcatgatggacatggccttggaggatatgccgatgtccgggtgcacctgctt 77

                                                                    
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
            |||||||||||||||||||||||||||||||| ||   |||||| |||||||||||
Sbjct: 76  gagcaccttgaagatgtagatcttgtaggtctcgacgctcttctttgccttcttctt 20
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4507_C01_F01, mRNA sequence
          Length = 365

 Score =  369 bits (186), Expect = e-102
 Identities = 276/306 (90%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 344 ctaagaggatgtaaactttgtgacagccttggtgccctcggagaccgcgtgcttggcaag 285

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||||||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 284 ctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 225

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           |||||| ||||| || |||||||||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 224 cttgttatagcgggcgagcttggcagactcgccagcgagtttctcaaagatgtcgttgat 165

                                                                       
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
           |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 164 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 105

                                                                       
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
            || ||||||||||||||||||||||||||||| ||   |||||||||||||||||| ||
Sbjct: 104 gaggaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttcttgcc 45

                 
Query: 483 cttctt 488
           ||||||
Sbjct: 44  cttctt 39
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4516_H02_P04, mRNA sequence
          Length = 472

 Score =  353 bits (178), Expect = 1e-097
 Identities = 250/274 (91%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 283 ctaagaggaagtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 224

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||| || ||||| ||||| |||||||| || || |||||||  |||||||||||||||||
Sbjct: 223 ctcccctggaagcacaagacgaacagaagtctggatctccctggaggtgatggtgggctt 164

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           ||||||||| | ||| |||||||||| |||||| || |||||||| ||||| ||||||||
Sbjct: 163 cttgttgtacctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttgat 104

                                                                       
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 103 gaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgctt 44

                                             
Query: 423 cagcaccttgaagatgtagatcttgtaggtctcc 456
            || ||||||||||||||||||||||||||||||
Sbjct: 43  gaggaccttgaagatgtagatcttgtaggtctcc 10
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_A08_B15, mRNA sequence
          Length = 655

 Score =  337 bits (170), Expect = 8e-093
 Identities = 272/306 (88%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| || |||||||| ||||| |||||||||||||| || || || |||||||||||
Sbjct: 356 ctaagacgaggtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgag 297

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||| ||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 296 ctccccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 237

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           ||||||||| | ||||||||| || | |||||| ||||| ||||||||||||||||||||
Sbjct: 236 cttgttgtacctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgat 177

                                                                       
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
           |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 176 gaaggagttcatgatggacatggccttggaggagatgccgatgtcgggatgcacctgctt 117

                                                                       
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
           ||| ||||||||||||||||||||||| ||||| ||   |||||| || |||||||| ||
Sbjct: 116 caggaccttgaagatgtagatcttgtatgtctctacgctcttcttggctttcttcttgcc 57

                 
Query: 483 cttctt 488
           ||||||
Sbjct: 56  cttctt 51
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4528_C10_F20, mRNA sequence
          Length = 360

 Score =  276 bits (139), Expect = 2e-074
 Identities = 199/219 (90%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 229 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 170

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
           ||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 169 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 110

                                                                       
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
           |||||||||||| || |||||||||| ||| || || |||||||| ||||||||||| ||
Sbjct: 109 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 50

                                                  
Query: 363 gaaggagttcatgatggacatggccttggaagagatgcc 401
           |||||||||||||||||||||||||| ||| || |||||
Sbjct: 49  gaaggagttcatgatggacatggcctaggaggatatgcc 11
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_F01_K01, mRNA sequence
          Length = 361

 Score =  155 bits (78), Expect = 6e-038
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                       
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
           |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 166 gtgaacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccgggg 107

                                                                       
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
           ||||| ||||| || ||||| || |||||||  |||||||||||||||||||||||||| 
Sbjct: 106 aggacgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtac 47

                         
Query: 313 cgcgcaagcttggc 326
           | ||| ||||||||
Sbjct: 46  ctcgcgagcttggc 33
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_E01_I01, mRNA sequence
          Length = 384

 Score =  137 bits (69), Expect = 1e-032
 Identities = 111/125 (88%)
 Strand = Plus / Minus

                                                                       
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
           |||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 178 ctaagaggaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 119

                                                                       
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
            || ||||| ||||| ||||| || ||||| || |||||||  |||||||||||||||||
Sbjct: 118 ttccccggggaggacgaggcggacggaggtctggatctccctggaggtgatggtgggctt 59

                
Query: 303 cttgt 307
           |||||
Sbjct: 58  cttgt 54
>gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4516_F10_L20, mRNA sequence
          Length = 805

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 460 gacttcttcgccttcttc 477
           ||||||||||||||||||
Sbjct: 100 gacttcttcgccttcttc 83
>gb|CN819828.1|CN819828 HRO4404_E08_J16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4404_E08_J16, mRNA
           sequence
          Length = 488

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 470 ccttcttcttacccttcttgtc 491
           |||| |||||||||||||||||
Sbjct: 380 cctttttcttacccttcttgtc 401
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1916
Number of Sequences: 8143
Number of extensions: 1916
Number of successful extensions: 555
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 17
length of query: 694
length of database: 4,702,463
effective HSP length: 16
effective length of query: 678
effective length of database: 4,572,175
effective search space: 3099934650
effective search space used: 3099934650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)