BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.12
(694 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 387 e-108
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 375 e-104
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 375 e-104
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 369 e-102
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 353 1e-097
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 337 8e-093
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 276 2e-074
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 155 6e-038
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 137 1e-032
gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Aven... 36 0.040
gb|CN819828.1|CN819828 HRO4404_E08_J16ZS5 Lib AA069E1X Aven... 36 0.040
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 387 bits (195), Expect = e-108
Identities = 261/283 (92%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| |||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 293 gtgaacttggtgacggccttggtgccctctgacacggcgtgcttggcgagctcgccgggg 234
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 233 aggacaaggcggacggaggtctggatctcccgggaggtgatggtgggcttcttgttgtag 174
Query: 313 cgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttc 372
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct: 173 cgcgccagcttggcggcctcgccagcgagtttctcaaagatgtcgttgatgaaggagttc 114
Query: 373 atgatggacatggccttggaagagatgccgatgtcggggtggacctgcttcagcaccttg 432
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 113 atgatggacatggccttggaggagatgccgatgtccgggtgcacctgcttcagcaccttg 54
Query: 433 aagatgtagatcttgtaggtctccaccgacttcttcgccttct 475
||||||||||||||||||||||| || ||||||||||||||
Sbjct: 53 aagatgtagatcttgtaggtctcgacgctcttcttcgccttct 11
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 375 bits (189), Expect = e-104
Identities = 252/273 (92%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctaagaggatgtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcgag 229
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| || || ||||| ||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 228 ctcccctgggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggctt 169
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 168 cttgttgtagcgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttgat 109
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 108 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 49
Query: 423 cagcaccttgaagatgtagatcttgtaggtctc 455
|| |||||||||||||||||||||||||||||
Sbjct: 48 gaggaccttgaagatgtagatcttgtaggtctc 16
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 375 bits (189), Expect = e-104
Identities = 270/297 (90%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 316 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 257
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 256 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 197
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||||| ||| || || |||||||| ||||||||||| ||
Sbjct: 196 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 137
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 136 gaaggagttcatgatggacatggccttggaggatatgccgatgtccgggtgcacctgctt 77
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttctt 479
|||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 76 gagcaccttgaagatgtagatcttgtaggtctcgacgctcttctttgccttcttctt 20
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 369 bits (186), Expect = e-102
Identities = 276/306 (90%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 344 ctaagaggatgtaaactttgtgacagccttggtgccctcggagaccgcgtgcttggcaag 285
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 284 ctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 225
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||| ||||| || |||||||||| |||||| ||||| ||||| ||||||||||||||
Sbjct: 224 cttgttatagcgggcgagcttggcagactcgccagcgagtttctcaaagatgtcgttgat 165
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 164 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 105
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
|| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct: 104 gaggaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttcttgcc 45
Query: 483 cttctt 488
||||||
Sbjct: 44 cttctt 39
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 353 bits (178), Expect = 1e-097
Identities = 250/274 (91%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 283 ctaagaggaagtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 224
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| || ||||| ||||| |||||||| || || ||||||| |||||||||||||||||
Sbjct: 223 ctcccctggaagcacaagacgaacagaagtctggatctccctggaggtgatggtgggctt 164
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||| | ||| |||||||||| |||||| || |||||||| ||||| ||||||||
Sbjct: 163 cttgttgtacctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttgat 104
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 103 gaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgctt 44
Query: 423 cagcaccttgaagatgtagatcttgtaggtctcc 456
|| ||||||||||||||||||||||||||||||
Sbjct: 43 gaggaccttgaagatgtagatcttgtaggtctcc 10
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 337 bits (170), Expect = 8e-093
Identities = 272/306 (88%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| ||||| |||||||||||||| || || || |||||||||||
Sbjct: 356 ctaagacgaggtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgag 297
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||| ||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||
Sbjct: 296 ctccccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 237
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
||||||||| | ||||||||| || | |||||| ||||| ||||||||||||||||||||
Sbjct: 236 cttgttgtacctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgat 177
Query: 363 gaaggagttcatgatggacatggccttggaagagatgccgatgtcggggtggacctgctt 422
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 176 gaaggagttcatgatggacatggccttggaggagatgccgatgtcgggatgcacctgctt 117
Query: 423 cagcaccttgaagatgtagatcttgtaggtctccaccgacttcttcgccttcttcttacc 482
||| ||||||||||||||||||||||| ||||| || |||||| || |||||||| ||
Sbjct: 116 caggaccttgaagatgtagatcttgtatgtctctacgctcttcttggctttcttcttgcc 57
Query: 483 cttctt 488
||||||
Sbjct: 56 cttctt 51
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 276 bits (139), Expect = 2e-074
Identities = 199/219 (90%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 229 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 170
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 169 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 110
Query: 303 cttgttgtagcgcgcaagcttggcagcctcgccggcgagcttctcgaagatgtcgttgat 362
|||||||||||| || |||||||||| ||| || || |||||||| ||||||||||| ||
Sbjct: 109 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 50
Query: 363 gaaggagttcatgatggacatggccttggaagagatgcc 401
|||||||||||||||||||||||||| ||| || |||||
Sbjct: 49 gaaggagttcatgatggacatggcctaggaggatatgcc 11
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 155 bits (78), Expect = 6e-038
Identities = 120/134 (89%)
Strand = Plus / Minus
Query: 193 gtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgagctcgccggga 252
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 166 gtgaacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccgggg 107
Query: 253 aggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttgttgtag 312
||||| ||||| || ||||| || ||||||| ||||||||||||||||||||||||||
Sbjct: 106 aggacgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtac 47
Query: 313 cgcgcaagcttggc 326
| ||| ||||||||
Sbjct: 46 ctcgcgagcttggc 33
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 137 bits (69), Expect = 1e-032
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 183 ctaagatgatgtgaacttagtgacggccttggtgccctcagagacagcgtgcttggcgag 242
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 178 ctaagaggaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 119
Query: 243 ctcgccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggctt 302
|| ||||| ||||| ||||| || ||||| || ||||||| |||||||||||||||||
Sbjct: 118 ttccccggggaggacgaggcggacggaggtctggatctccctggaggtgatggtgggctt 59
Query: 303 cttgt 307
|||||
Sbjct: 58 cttgt 54
>gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F10_L20, mRNA sequence
Length = 805
Score = 36.2 bits (18), Expect = 0.040
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 460 gacttcttcgccttcttc 477
||||||||||||||||||
Sbjct: 100 gacttcttcgccttcttc 83
>gb|CN819828.1|CN819828 HRO4404_E08_J16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_E08_J16, mRNA
sequence
Length = 488
Score = 36.2 bits (18), Expect = 0.040
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 470 ccttcttcttacccttcttgtc 491
|||| |||||||||||||||||
Sbjct: 380 cctttttcttacccttcttgtc 401
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1916
Number of Sequences: 8143
Number of extensions: 1916
Number of successful extensions: 555
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 17
length of query: 694
length of database: 4,702,463
effective HSP length: 16
effective length of query: 678
effective length of database: 4,572,175
effective search space: 3099934650
effective search space used: 3099934650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)