BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815652.1|CN815652 HRO4514_A06_A12ZS5 Lib AA071E1X Aven... 38 0.019
gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Aven... 36 0.075
gb|CN816899.1|CN816899 HRO4526_A07_A14ZS5 Lib AA071E1X Aven... 36 0.075
emb|X54852.1|ASTUB1MR Oat TUB1 mRNA for beta-tubulin (partial) 36 0.075
>gb|CN815652.1|CN815652 HRO4514_A06_A12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A06_A12, mRNA sequence
Length = 825
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 851 ctcctcctcttcatcctca 869
|||||||||||||||||||
Sbjct: 61 ctcctcctcttcatcctca 43
>gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C02_F04, mRNA sequence
Length = 741
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 852 tcctcctcttcatcctca 869
||||||||||||||||||
Sbjct: 100 tcctcctcttcatcctca 83
>gb|CN816899.1|CN816899 HRO4526_A07_A14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A07_A14, mRNA sequence
Length = 436
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 852 tcctcctcttcatcctca 869
||||||||||||||||||
Sbjct: 156 tcctcctcttcatcctca 139
>emb|X54852.1|ASTUB1MR Oat TUB1 mRNA for beta-tubulin (partial)
Length = 1420
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 852 tcctcctcttcatcctca 869
||||||||||||||||||
Sbjct: 1140 tcctcctcttcatcctca 1123
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3713
Number of Sequences: 8143
Number of extensions: 3713
Number of successful extensions: 989
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 7
length of query: 1297
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1281
effective length of database: 4,572,175
effective search space: 5856956175
effective search space used: 5856956175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)