BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF089711.1|AF089711 Arabidopsis thaliana rpp8 gene, comp... 36 4.3
gb|AF089710.1|AF089710 Arabidopsis thaliana disease resista... 36 4.3
gb|AY206268.1| Arabidopsis thaliana resistance protein Hod3... 36 4.3
gb|AY206271.1| Arabidopsis thaliana At5g48610-like protein ... 36 4.3
gb|AY206272.1| Arabidopsis thaliana resistance protein Sorb... 36 4.3
dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosom... 36 4.3
dbj|AB087829.1| Arabidopsis thaliana RCY1 gene for R-protei... 36 4.3
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 36 4.3
emb|X79279.1|ATATK1 A.thaliana AtK-1 gene 36 4.3
emb|Y07597.1|ATASKKAP A.thaliana mRNA for shaggy-like kinas... 36 4.3
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 36 4.3
>gb|AF089711.1|AF089711 Arabidopsis thaliana rpp8 gene, complete cds
Length = 6475
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 1960 tagcaatatgtatacaaa 1943
>gb|AF089710.1|AF089710 Arabidopsis thaliana disease resistance protein RPP8 (RPP8) gene,
complete cds
Length = 15000
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 1977 tagcaatatgtatacaaa 1960
>gb|AY206268.1| Arabidopsis thaliana resistance protein Hod3 gene, complete cds
Length = 5478
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 1849 tagcaatatgtatacaaa 1832
>gb|AY206271.1| Arabidopsis thaliana At5g48610-like protein and resistance protein
Ler3 genes, complete cds; and resistance protein Ler1
pseudogene, complete sequence
Length = 14020
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 5112 tagcaatatgtatacaaa 5095
>gb|AY206272.1| Arabidopsis thaliana resistance protein Sorb3 gene, partial cds
Length = 4028
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 1854 tagcaatatgtatacaaa 1837
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20
Length = 91193
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 80462 tagcaatatgtatacaaa 80479
>dbj|AB087829.1| Arabidopsis thaliana RCY1 gene for R-protein, complete cds
Length = 7510
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 2859 tagcaatatgtatacaaa 2842
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 15906623 tagcaatatgtatacaaa 15906640
>emb|X79279.1|ATATK1 A.thaliana AtK-1 gene
Length = 5491
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33 taaattctgtatagtttc 50
||||||||||||||||||
Sbjct: 4050 taaattctgtatagtttc 4033
>emb|Y07597.1|ATASKKAP A.thaliana mRNA for shaggy-like kinase kappa
Length = 1340
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33 taaattctgtatagtttc 50
||||||||||||||||||
Sbjct: 817 taaattctgtatagtttc 800
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 36.2 bits (18), Expect = 4.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 307 tagcaatatgtatacaaa 324
||||||||||||||||||
Sbjct: 17482588 tagcaatatgtatacaaa 17482605
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,812
Number of Sequences: 1013581
Number of extensions: 186812
Number of successful extensions: 13582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13412
Number of HSP's gapped (non-prelim): 170
length of query: 394
length of database: 908,940,872
effective HSP length: 20
effective length of query: 374
effective length of database: 888,669,252
effective search space: 332362300248
effective search space used: 332362300248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)