BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX651854.1| Sequence 720 from Patent WO03000898 56 6e-006
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 56 6e-006
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 48 0.001
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 48 0.001
emb|AX412747.1| Sequence 511 from Patent WO0222675 46 0.006
emb|AX508002.1| Sequence 2697 from Patent WO0216655 46 0.006
gb|CW841437.1|CW841437 ET11212.Ds5.03.20.2003.jw85.750 Arab... 44 0.023
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 44 0.023
emb|AX059538.1| Sequence 271 from Patent WO0055325 44 0.023
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 44 0.023
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 44 0.023
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.023
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 44 0.023
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 44 0.023
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 44 0.023
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 44 0.023
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.023
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.023
gb|AQ956062.1|AQ956062 LERAH21TR LERA Arabidopsis thaliana ... 42 0.092
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.092
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 42 0.092
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 42 0.092
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.092
gb|BH750246.1|BH750246 SALK_037603.56.00.x Arabidopsis thal... 40 0.36
emb|AL806921.1| Arabidopsis thaliana transposon insertion S... 40 0.36
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 40 0.36
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.36
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.36
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 40 0.36
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 40 0.36
ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTH... 40 0.36
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 40 0.36
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.36
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 56.0 bits (28), Expect = 6e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttg 135
||||||||| |||||||||||||| |||||||||||
Sbjct: 3657 gtacatcattcctcttacagttctagtcaaagtttg 3622
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 3536 tcaagaaaattgttccattcatctgg 3511
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 56.0 bits (28), Expect = 6e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttg 135
||||||||| |||||||||||||| |||||||||||
Sbjct: 3799 gtacatcattcctcttacagttctagtcaaagtttg 3764
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 3678 tcaagaaaattgttccattcatctgg 3653
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 224 agaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaactccg 283
||||| ||| |||||||||||||| |||| || ||||| ||||| || || ||||||||
Sbjct: 3383 agaaagtttgtccattcatctgggaagatcttctgcaagtaaaagagtatagaaactcca 3324
Query: 284 tcctcatt 291
|| |||||
Sbjct: 3323 tcttcatt 3316
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
|||||||| |||| |||||| | |||| |||||| || | ||| ||||||||||| |||
Sbjct: 3506 tacatcattcctcgcacagttttagtcagagtttggcctctgtaagatgcccaaagacga 3447
Query: 161 agctgctcttc 171
|||| ||||||
Sbjct: 3446 agctcctcttc 3436
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 224 agaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaactccg 283
||||| ||| |||||||||||||| |||| || ||||| ||||| || || ||||||||
Sbjct: 3383 agaaagtttgtccattcatctgggaagatcttctgcaagtaaaagagtatagaaactcca 3324
Query: 284 tcctcatt 291
|| |||||
Sbjct: 3323 tcttcatt 3316
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
|||||||| |||| |||||| | |||| |||||| || | ||| ||||||||||| |||
Sbjct: 3506 tacatcattcctcgcacagttttagtcagagtttggcctctgtaagatgcccaaagacga 3447
Query: 161 agctgctcttc 171
|||| ||||||
Sbjct: 3446 agctcctcttc 3436
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
|||||||| |||| |||||| | |||| |||||| || | ||| ||||||||||| |||
Sbjct: 3359 tacatcattcctcgcacagttttagtcagagtttggcctctgtaagatgcccaaagacga 3300
Query: 161 agctgctcttc 171
|||| ||||||
Sbjct: 3299 agctcctcttc 3289
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
|||||||| |||| |||||| | |||| |||||| || | ||| ||||||||||| |||
Sbjct: 3359 tacatcattcctcgcacagttttagtcagagtttggcctctgtaagatgcccaaagacga 3300
Query: 161 agctgctcttc 171
|||| ||||||
Sbjct: 3299 agctcctcttc 3289
>gb|CW841437.1|CW841437 ET11212.Ds5.03.20.2003.jw85.750 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11212, DNA sequence
Length = 750
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 206 tcaagaaaattgttccattcatctgg 181
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 10586 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 10527
Query: 161 ag 162
||
Sbjct: 10526 ag 10525
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 1089 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 1030
Query: 161 ag 162
||
Sbjct: 1029 ag 1028
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 180998 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 181057
Query: 161 ag 162
||
Sbjct: 181058 ag 181059
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 2538914 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 2538855
Query: 161 ag 162
||
Sbjct: 2538854 ag 2538853
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 3927219 tcaagaaaattgttccattcatctgg 3927244
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 72111 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 72052
Query: 161 ag 162
||
Sbjct: 72051 ag 72050
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 66060 tcaagaaaattgttccattcatctgg 66085
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 44.1 bits (22), Expect = 0.023
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 222 caagaaaatttttccattcatctgggtagatttt 255
|||||||||||||||| |||||||| || |||||
Sbjct: 3424 caagaaaatttttccactcatctggatatatttt 3391
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 2969 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 2910
Query: 161 ag 162
||
Sbjct: 2909 ag 2908
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.023
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 101 tacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcga 160
||||||||||||| || ||||| | ||| |||||||||| ||||| ||||| ||||||
Sbjct: 2540094 tacatcatccctcgcactgttctggacaatgtttgtcccctatatgaagcccagaggcga 2540035
Query: 161 ag 162
||
Sbjct: 2540034 ag 2540033
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctgg 246
||||||||||| ||||||||||||||
Sbjct: 4114246 tcaagaaaattgttccattcatctgg 4114271
>gb|AQ956062.1|AQ956062 LERAH21TR LERA Arabidopsis thaliana genomic clone LERAH21, DNA
sequence
Length = 708
Score = 42.1 bits (21), Expect = 0.092
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 320 agaacatcttctttataataaggagtcaagaca 352
|||||||| ||||| ||||||||||| ||||||
Sbjct: 516 agaacatcctctttgtaataaggagttaagaca 484
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.092
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 320 agaacatcttctttataataaggagtcaagaca 352
|||||||| ||||| ||||||||||| ||||||
Sbjct: 1984952 agaacatcctctttgtaataaggagttaagaca 1984920
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 42.1 bits (21), Expect = 0.092
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 320 agaacatcttctttataataaggagtcaagaca 352
|||||||| ||||| ||||||||||| ||||||
Sbjct: 68904 agaacatcctctttgtaataaggagttaagaca 68936
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 42.1 bits (21), Expect = 0.092
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 320 agaacatcttctttataataaggagtcaagaca 352
|||||||| ||||| ||||||||||| ||||||
Sbjct: 3284 agaacatcctctttgtaataaggagttaagaca 3252
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.092
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 320 agaacatcttctttataataaggagtcaagaca 352
|||||||| ||||| ||||||||||| ||||||
Sbjct: 1985105 agaacatcctctttgtaataaggagttaagaca 1985073
>gb|BH750246.1|BH750246 SALK_037603.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_037603.56.00.x,
DNA sequence
Length = 426
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 81 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 132
>emb|AL806921.1| Arabidopsis thaliana transposon insertion STS SM_3.20107, sequence
tagged site
Length = 461
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 349 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 400
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 222 caagaaaatttttccattcatctg 245
|||||||||||||||| |||||||
Sbjct: 64139 caagaaaatttttccactcatctg 64116
>dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1
Length = 84462
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 26874 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 26823
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 cataaaaagagaattagcaaagaa 420
|||||| |||||||||||||||||
Sbjct: 21808278 cataaacagagaattagcaaagaa 21808255
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 4888817 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 4888766
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 222 caagaaaatttttccattcatctg 245
|||||||||||||||| |||||||
Sbjct: 2295774 caagaaaatttttccactcatctg 2295751
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 cataaaaagagaattagcaaagaa 420
|||||| |||||||||||||||||
Sbjct: 62964 cataaacagagaattagcaaagaa 62941
>ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTHASE-LIKE 4);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G14570 (ATGSL04) mRNA, complete cds
Length = 5922
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 3392 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 3341
>ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTHASE-LIKE 11);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G59100 (ATGSL11) mRNA, complete cds
Length = 5805
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 cataaaaagagaattagcaaagaa 420
|||||| |||||||||||||||||
Sbjct: 3216 cataaacagagaattagcaaagaa 3193
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 40.1 bits (20), Expect = 0.36
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 224 agaaaatttttccattcatctgggtagattttttgcaaataaaa 267
||||| ||||||||||||||||| | ||||| ||||| |||||
Sbjct: 3155 agaaagtttttccattcatctggaaatattttctgcaagtaaaa 3112
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 cataaaaagagaattagcaaagaa 420
|||||| |||||||||||||||||
Sbjct: 21860710 cataaacagagaattagcaaagaa 21860687
Score = 40.1 bits (20), Expect = 0.36
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 374 acttttggagcatctggcatcgacataaaaagagaattagcaaagaaagata 425
||||| |||||||| ||||| ||| ||||| ||| |||||||||||||||
Sbjct: 4898921 actttcggagcatcgggcatatccatgaaaagcgaagtagcaaagaaagata 4898870
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 222 caagaaaatttttccattcatctg 245
|||||||||||||||| |||||||
Sbjct: 2270650 caagaaaatttttccactcatctg 2270673
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 350,119
Number of Sequences: 1013581
Number of extensions: 350119
Number of successful extensions: 25956
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24538
Number of HSP's gapped (non-prelim): 1418
length of query: 513
length of database: 908,940,872
effective HSP length: 20
effective length of query: 493
effective length of database: 888,669,252
effective search space: 438113941236
effective search space used: 438113941236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)