BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21b10.yg.2.1
(574 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE526344.1|BE526344 M65C21STM Arabidopsis developing see... 100 5e-019
ref|NM_118224.2| Arabidopsis thaliana transferase, transfer... 100 5e-019
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 60 4e-007
emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome... 60 4e-007
emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosom... 60 4e-007
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 60 4e-007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 54 3e-005
gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis tha... 54 3e-005
dbj|AK118254.1| Arabidopsis thaliana At1g27120 mRNA for unk... 54 3e-005
ref|NM_102474.2| Arabidopsis thaliana transferase, transfer... 54 3e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 54 3e-005
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 48 0.002
gb|AV552613.1|AV552613 AV552613 Arabidopsis thaliana roots ... 46 0.007
gb|AV560615.1|AV560615 AV560615 Arabidopsis thaliana green ... 46 0.007
gb|BP649393.1|BP649393 BP649393 RAFL19 Arabidopsis thaliana... 46 0.007
gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA... 46 0.007
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 46 0.007
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 46 0.007
ref|NM_106138.2| Arabidopsis thaliana transferase, transfer... 46 0.007
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.10
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.41
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.41
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.41
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 40 0.41
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 40 0.41
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.41
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 40 0.41
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.41
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.41
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 40 0.41
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.41
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 40 0.41
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 40 0.41
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.41
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 40 0.41
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 40 0.41
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 40 0.41
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.41
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 40 0.41
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 40 0.41
emb|AX059531.1| Sequence 264 from Patent WO0055325 40 0.41
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.41
gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from ... 40 0.41
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 40 0.41
emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosom... 40 0.41
>gb|BE526344.1|BE526344 M65C21STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600034982R1 5', mRNA sequence
Length = 257
Score = 99.6 bits (50), Expect = 5e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 30 cgattctttgttgcactgaattcgaggaaggaggtcaatgtaatgttgaagaaagaagca 89
||||||||||||||||| ||| | || ||||| || |||| |||| | ||||| || ||
Sbjct: 38 cgattctttgttgcacttaatccaagaaaggaagttaatgcaatgctaaagaaggaggct 97
Query: 90 gaatactttggagacattgtcattttgccatttatagaccgctatgagctggttgttctt 149
||||| |||||||| ||||| ||| |||| ||||| || || |||||||| || || |||
Sbjct: 98 gaatattttggagatattgtgattctgccctttatggatcgatatgagctagtggtcctt 157
Query: 150 aagacaattgctatctgtgagtatggggtccagaacttgactgctgcaaacatcatgaaa 209
||||||||||| || ||||| | |||||||||||| |||| || || | || |||||
Sbjct: 158 aagacaattgccatttgtgaatttggggtccagaatgtgacagcgccatatataatgaag 217
Query: 210 tgtgacgatgatac 223
||||||||||||||
Sbjct: 218 tgtgacgatgatac 231
>ref|NM_118224.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT4G21060 mRNA,
complete cds
Length = 2226
Score = 99.6 bits (50), Expect = 5e-019
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 30 cgattctttgttgcactgaattcgaggaaggaggtcaatgtaatgttgaagaaagaagca 89
||||||||||||||||| ||| | || ||||| || |||| |||| | ||||| || ||
Sbjct: 1588 cgattctttgttgcacttaatccaagaaaggaagttaatgcaatgctaaagaaggaggct 1647
Query: 90 gaatactttggagacattgtcattttgccatttatagaccgctatgagctggttgttctt 149
||||| |||||||| ||||| ||| |||| ||||| || || |||||||| || || |||
Sbjct: 1648 gaatattttggagatattgtgattctgccctttatggatcgatatgagctagtggtcctt 1707
Query: 150 aagacaattgctatctgtgagtatggggtccagaacttgactgctgcaaacatcatgaaa 209
||||||||||| || ||||| | |||||||||||| |||| || || | || |||||
Sbjct: 1708 aagacaattgccatttgtgaatttggggtccagaatgtgacagcgccatatataatgaag 1767
Query: 210 tgtgacgatgatac 223
||||||||||||||
Sbjct: 1768 tgtgacgatgatac 1781
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 57 aaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttg 116
||||| || |||| |||| | ||||| || || ||||| |||||||| ||||| ||| ||
Sbjct: 7156671 aaggaagttaatgcaatgctaaagaaggaggctgaatattttggagatattgtgattctg 7156730
Query: 117 ccatttatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggg 176
|| ||||| || || |||||||| || || |||||||||||||| || ||||| | ||||
Sbjct: 7156731 ccctttatggatcgatatgagctagtggtccttaagacaattgccatttgtgaatttggg 7156790
Query: 177 gt 178
||
Sbjct: 7156791 gt 7156792
>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project)
Length = 91570
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 57 aaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttg 116
||||| || |||| |||| | ||||| || || ||||| |||||||| ||||| ||| ||
Sbjct: 83010 aaggaagttaatgcaatgctaaagaaggaggctgaatattttggagatattgtgattctg 83069
Query: 117 ccatttatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggg 176
|| ||||| || || |||||||| || || |||||||||||||| || ||||| | ||||
Sbjct: 83070 ccctttatggatcgatatgagctagtggtccttaagacaattgccatttgtgaatttggg 83129
Query: 177 gt 178
||
Sbjct: 83130 gt 83131
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
Length = 198715
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 57 aaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttg 116
||||| || |||| |||| | ||||| || || ||||| |||||||| ||||| ||| ||
Sbjct: 55488 aaggaagttaatgcaatgctaaagaaggaggctgaatattttggagatattgtgattctg 55547
Query: 117 ccatttatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggg 176
|| ||||| || || |||||||| || || |||||||||||||| || ||||| | ||||
Sbjct: 55548 ccctttatggatcgatatgagctagtggtccttaagacaattgccatttgtgaatttggg 55607
Query: 177 gt 178
||
Sbjct: 55608 gt 55609
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 57 aaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgtcattttg 116
||||| || |||| |||| | ||||| || || ||||| |||||||| ||||| ||| ||
Sbjct: 11243922 aaggaagttaatgcaatgctaaagaaggaggctgaatattttggagatattgtgattctg 11243981
Query: 117 ccatttatagaccgctatgagctggttgttcttaagacaattgctatctgtgagtatggg 176
|| ||||| || || |||||||| || || |||||||||||||| || ||||| | ||||
Sbjct: 11243982 ccctttatggatcgatatgagctagtggtccttaagacaattgccatttgtgaatttggg 11244041
Query: 177 gt 178
||
Sbjct: 11244042 gt 11244043
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 tgacaaaccattatatatgg 291
||||||||||||||||||||
Sbjct: 2213214 tgacaaaccattatatatgg 2213233
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 204 atgaaatgtgacgatgatacatttgtg 230
|||||||||||||||||||||||||||
Sbjct: 9432044 atgaaatgtgacgatgatacatttgtg 9432070
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 9432490 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 9432532
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
complete sequence
Length = 111566
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 204 atgaaatgtgacgatgatacatttgtg 230
|||||||||||||||||||||||||||
Sbjct: 64896 atgaaatgtgacgatgatacatttgtg 64922
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 65342 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 65384
>dbj|AK118254.1| Arabidopsis thaliana At1g27120 mRNA for unknown protein, complete
cds, clone: RAFL19-55-I21
Length = 2391
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 204 atgaaatgtgacgatgatacatttgtg 230
|||||||||||||||||||||||||||
Sbjct: 1770 atgaaatgtgacgatgatacatttgtg 1796
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 2032 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 2074
>ref|NM_102474.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G27120 mRNA,
complete cds
Length = 2391
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 204 atgaaatgtgacgatgatacatttgtg 230
|||||||||||||||||||||||||||
Sbjct: 1770 atgaaatgtgacgatgatacatttgtg 1796
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 2032 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 2074
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 204 atgaaatgtgacgatgatacatttgtg 230
|||||||||||||||||||||||||||
Sbjct: 9423249 atgaaatgtgacgatgatacatttgtg 9423275
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 28106569 acataatgaagtgtgacgatgatacatttgt 28106539
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 9423695 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 9423737
Score = 42.1 bits (21), Expect = 0.10
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 53 gaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgt 109
|||||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 28106819 gaggaaggaggtgaatgtggaattgaagaaagaagcggagtattttggggacattgt 28106763
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacgcgg 24
||||||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtacgcgg 274
>gb|AV552613.1|AV552613 AV552613 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ34e04R 5', mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 305 acataatgaagtgtgacgatgatacatttgt 335
Score = 46.1 bits (23), Expect = 0.007
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 27 gctcgattctttgttgcactgaattcgaggaaggaggtcaatgtaatgttgaagaaagaa 86
||||| |||||||| || ||| || |||||||||||| ||||| ||||||||||||
Sbjct: 133 gctcgtttctttgtggcgctgcatgggaggaaggaggtgaatgtggaattgaagaaagaa 192
Query: 87 gcagaatactttggagacattgt 109
|| || || ||||| ||||||||
Sbjct: 193 gcggagtattttggggacattgt 215
>gb|AV560615.1|AV560615 AV560615 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ137f05F 3', mRNA sequence
Length = 350
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 289 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 247
>gb|BP649393.1|BP649393 BP649393 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-13-H03 3',
mRNA sequence
Length = 397
Score = 46.1 bits (23), Expect = 0.007
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 466 agatggaagatgtaagcatgggcctatgggtcgagaagttcaa 508
||||||||||||| |||||||| | ||||| |||||||||||
Sbjct: 371 agatggaagatgtgagcatgggaatgtgggtggagaagttcaa 329
>gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA, complete cds
Length = 2391
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 1666 acataatgaagtgtgacgatgatacatttgt 1696
Score = 46.1 bits (23), Expect = 0.007
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 27 gctcgattctttgttgcactgaattcgaggaaggaggtcaatgtaatgttgaagaaagaa 86
||||| |||||||| || ||| || |||||||||||| ||||| ||||||||||||
Sbjct: 1494 gctcgtttctttgtggcgctgcatgggaggaaggaggtgaatgtggaattgaagaaagaa 1553
Query: 87 gcagaatactttggagacattgt 109
|| || || ||||| ||||||||
Sbjct: 1554 gcggagtattttggggacattgt 1576
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
Length = 115721
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 72122 acataatgaagtgtgacgatgatacatttgt 72152
Score = 42.1 bits (21), Expect = 0.10
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 53 gaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgt 109
|||||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 71872 gaggaaggaggtgaatgtggaattgaagaaagaagcggagtattttggggacattgt 71928
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 12344227 acataatgaagtgtgacgatgatacatttgt 12344197
Score = 42.1 bits (21), Expect = 0.10
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 53 gaggaaggaggtcaatgtaatgttgaagaaagaagcagaatactttggagacattgt 109
|||||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 12344477 gaggaaggaggtgaatgtggaattgaagaaagaagcggagtattttggggacattgt 12344421
>ref|NM_106138.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G74800 mRNA,
complete cds
Length = 2391
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 199 acatcatgaaatgtgacgatgatacatttgt 229
|||| ||||| ||||||||||||||||||||
Sbjct: 1666 acataatgaagtgtgacgatgatacatttgt 1696
Score = 46.1 bits (23), Expect = 0.007
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 27 gctcgattctttgttgcactgaattcgaggaaggaggtcaatgtaatgttgaagaaagaa 86
||||| |||||||| || ||| || |||||||||||| ||||| ||||||||||||
Sbjct: 1494 gctcgtttctttgtggcgctgcatgggaggaaggaggtgaatgtggaattgaagaaagaa 1553
Query: 87 gcagaatactttggagacattgt 109
|| || || ||||| ||||||||
Sbjct: 1554 gcggagtattttggggacattgt 1576
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacg 21
|||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtacg 435
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtac 52
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtac 199
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtac 239
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 304
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtac 170
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtac 84
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtac 59
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtac 33
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtac 366
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtac 224
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtac 213
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtac 397
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtac 382
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtac 329
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtac 332
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtac 452
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtac 247
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtac 123
>emb|AX059531.1| Sequence 264 from Patent WO0055325
Length = 49906
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 tgacaaaccattatatatgg 291
||||||||||||||||||||
Sbjct: 13387 tgacaaaccattatatatgg 13406
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
sequence
Length = 99384
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 tgacaaaccattatatatgg 291
||||||||||||||||||||
Sbjct: 34644 tgacaaaccattatatatgg 34663
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 tgacaaaccattatatatgg 291
||||||||||||||||||||
Sbjct: 2212033 tgacaaaccattatatatgg 2212052
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12
Length = 199759
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 tgacaaaccattatatatgg 291
||||||||||||||||||||
Sbjct: 134990 tgacaaaccattatatatgg 135009
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 248,438
Number of Sequences: 1013581
Number of extensions: 248438
Number of successful extensions: 18982
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18244
Number of HSP's gapped (non-prelim): 730
length of query: 574
length of database: 908,940,872
effective HSP length: 20
effective length of query: 554
effective length of database: 888,669,252
effective search space: 492322765608
effective search space used: 492322765608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)