BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW840187.1|CW840187 GT9608.Ds3.08.20.2001.jw08.373 Arabi... 46 0.004
gb|CW847056.1|CW847056 GT13978.Ds5.02.13.2004.jx52.337 Arab... 46 0.004
gb|AV829212.1|AV829212 AV829212 RAFL9 Arabidopsis thaliana ... 46 0.004
gb|BX839961.1|BX839961 BX839961 Arabidopsis thaliana Hormon... 46 0.004
gb|BX840155.1|BX840155 BX840155 Arabidopsis thaliana Hormon... 46 0.004
gb|BP864386.1|BP864386 BP864386 RAFL21 Arabidopsis thaliana... 46 0.004
gb|AF087016.1|AF087016 Arabidopsis thaliana auxin transport... 46 0.004
gb|AY091009.1| Arabidopsis thaliana putative auxin transpor... 46 0.004
gb|BT008691.1| Arabidopsis thaliana clone RAFL09-75-E06 (R1... 46 0.004
emb|AL954303.1| Arabidopsis thaliana transposon insertion S... 46 0.004
gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9... 46 0.004
gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A... 46 0.004
emb|BX820960.1|CNS0A83S Arabidopsis thaliana Full-length cD... 46 0.004
emb|CR383955.1| Arabidopsis thaliana transposon insertion S... 46 0.004
ref|NM_126203.2| Arabidopsis thaliana PIN4 (PIN-FORMED 4); ... 46 0.004
ref|NM_179592.1| Arabidopsis thaliana PIN4 (PIN-FORMED 4); ... 46 0.004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.004
gb|BZ378336.1|BZ378336 SALK_107965.46.80.x Arabidopsis thal... 40 0.25
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.25
emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome ... 40 0.25
ref|NM_121514.1| Arabidopsis thaliana auxin:hydrogen sympor... 40 0.25
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.25
>gb|CW840187.1|CW840187 GT9608.Ds3.08.20.2001.jw08.373 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT9608, DNA sequence
Length = 373
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 254 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 313
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 314 tgctccggcatcaac 328
>gb|CW847056.1|CW847056 GT13978.Ds5.02.13.2004.jx52.337 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT13978, DNA sequence
Length = 337
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 205 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 264
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 265 tgctccggcatcaac 279
>gb|AV829212.1|AV829212 AV829212 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-41-E02 5',
mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 180 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 239
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 240 tgctccggcatcaac 254
>gb|BX839961.1|BX839961 BX839961 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH58ZG12 5PRIM,
mRNA sequence
Length = 948
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 162 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 221
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 222 tgctccggcatcaac 236
>gb|BX840155.1|BX840155 BX840155 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH84ZF07 5PRIM,
mRNA sequence
Length = 972
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 127 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 186
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 187 tgctccggcatcaac 201
>gb|BP864386.1|BP864386 BP864386 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-70-B12 5',
mRNA sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 242 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 301
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 302 tgctccggcatcaac 316
>gb|AF087016.1|AF087016 Arabidopsis thaliana auxin transporter splice variant b (PIN4)
mRNA, complete cds
Length = 2264
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 91 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 150
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 151 tgctccggcatcaac 165
>gb|AY091009.1| Arabidopsis thaliana putative auxin transport protein (At2g01420)
mRNA, complete cds
Length = 2404
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 179 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 238
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 239 tgctccggcatcaac 253
>gb|BT008691.1| Arabidopsis thaliana clone RAFL09-75-E06 (R19634) putative auxin
transport protein (At2g01420) mRNA, complete cds
Length = 2358
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 184 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 243
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 244 tgctccggcatcaac 258
>emb|AL954303.1| Arabidopsis thaliana transposon insertion STS GT_3.270, sequence
tagged site
Length = 527
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 308 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 249
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 248 tgctccggcatcaac 234
>gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9 map rga, complete
sequence
Length = 103125
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 9705 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 9646
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 9645 tgctccggcatcaac 9631
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
sequence
Length = 94029
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 92741 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 92682
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 92681 tgctccggcatcaac 92667
>emb|BX820960.1|CNS0A83S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH86ZB02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2205
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 164 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 223
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 224 tgctccggcatcaac 238
>emb|CR383955.1| Arabidopsis thaliana transposon insertion STS GT_3.106443, sequence
tagged site
Length = 356
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 229 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 170
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 169 tgctccggcatcaac 155
>ref|NM_126203.2| Arabidopsis thaliana PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/
transporter AT2G01420 (PIN4) transcript variant
AT2G01420.1 mRNA, complete cds
Length = 2341
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 184 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 243
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 244 tgctccggcatcaac 258
>ref|NM_179592.1| Arabidopsis thaliana PIN4 (PIN-FORMED 4); auxin:hydrogen symporter
AT2G01420 (PIN4) transcript variant AT2G01420.2 mRNA,
complete cds
Length = 2353
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 184 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 243
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 244 tgctccggcatcaac 258
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.004
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 127 gtagctatgatagtggcctacctatccatacaatggtggaagctgttcacgccagagcag 186
||||||||||| | |||||| |||| |||| ||||||||| | ||| | ||||| |||
Sbjct: 183144 gtagctatgattctcgcctacggatccgtacagtggtggaagatattctcaccagaccag 183085
Query: 187 tgctccggtatcaac 201
|||||||| ||||||
Sbjct: 183084 tgctccggcatcaac 183070
>gb|BZ378336.1|BZ378336 SALK_107965.46.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_107965.46.80.x,
DNA sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 196 atcaacaagttcgtagcgaagttttccatccctttgctctcttt 239
|||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 9 atcaacaaattcgtggccaaattctccatccctttgctttcttt 52
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 196 atcaacaagttcgtagcgaagttttccatccctttgctctcttt 239
|||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 4676790 atcaacaaattcgtggccaaattctccatccctttgctttcttt 4676747
>emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project)
Length = 85992
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 196 atcaacaagttcgtagcgaagttttccatccctttgctctcttt 239
|||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 78563 atcaacaaattcgtggccaaattctccatccctttgctttcttt 78520
>ref|NM_121514.1| Arabidopsis thaliana auxin:hydrogen symporter/ transporter
AT5G15100 mRNA, complete cds
Length = 1104
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 196 atcaacaagttcgtagcgaagttttccatccctttgctctcttt 239
|||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 124 atcaacaaattcgtggccaaattctccatccctttgctttcttt 167
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.25
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 196 atcaacaagttcgtagcgaagttttccatccctttgctctcttt 239
|||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 4893817 atcaacaaattcgtggccaaattctccatccctttgctttcttt 4893774
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,731
Number of Sequences: 1013581
Number of extensions: 115731
Number of successful extensions: 9233
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9057
Number of HSP's gapped (non-prelim): 176
length of query: 361
length of database: 908,940,872
effective HSP length: 19
effective length of query: 342
effective length of database: 889,682,833
effective search space: 304271528886
effective search space used: 304271528886
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)