BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosom... 90 5e-016
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 90 5e-016
ref|NM_121024.1| Arabidopsis thaliana CESA5 (CELLULASE SYNT... 90 5e-016
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 90 5e-016
gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8... 66 7e-009
ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNT... 66 7e-009
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 66 7e-009
gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synth... 64 3e-008
gb|AQ955592.1|AQ955592 LERAE88TF LERA Arabidopsis thaliana ... 62 1e-007
gb|AF091713.1|AF091713 Arabidopsis thaliana cellulose synth... 58 2e-006
gb|AF088917.1|AF088917 Arabidopsis thaliana cellulose synth... 58 2e-006
gb|AY139754.1| Arabidopsis thaliana AT5g17420/T10B6_80 mRNA... 58 2e-006
gb|BT004543.1| Arabidopsis thaliana AT5g17420/T10B6_80 gene... 58 2e-006
emb|AL391142.1|ATT10B6 Arabidopsis thaliana DNA chromosome ... 58 2e-006
ref|NM_121748.2| Arabidopsis thaliana IRX3 (IRREGULAR XYLEM... 58 2e-006
gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like... 56 7e-006
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 56 7e-006
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 56 7e-006
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 56 7e-006
ref|NM_117994.2| Arabidopsis thaliana CESA8 (CELLULASE SYNT... 56 7e-006
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 56 7e-006
gb|AF027173.1|AF027173 Arabidopsis thaliana cellulose synth... 52 1e-004
dbj|BD022675.1| Manipulation of cellulose and/or beta-1,4-g... 52 1e-004
emb|AX505864.1| Sequence 559 from Patent WO0216655 52 1e-004
emb|AX030941.1| Sequence 4 from Patent WO9800549 52 1e-004
emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome ... 52 1e-004
emb|AL161595.2|ATCHRIV91 Arabidopsis thaliana DNA chromosom... 52 1e-004
ref|NM_120095.2| Arabidopsis thaliana CESA2; cellulose synt... 52 1e-004
gb|AQ955593.1|AQ955593 LERAE88TR LERA Arabidopsis thaliana ... 50 4e-004
gb|AV823575.1|AV823575 AV823575 RAFL5 Arabidopsis thaliana ... 50 4e-004
gb|AF062485.1|AF062485 Arabidopsis thaliana cellulose synth... 50 4e-004
dbj|BD022677.1| Manipulation of cellulose and/or beta-1,4-g... 50 4e-004
emb|AX507835.1| Sequence 2530 from Patent WO0216655 50 4e-004
emb|AX030944.1| Sequence 7 from Patent WO9800549 50 4e-004
emb|BX832166.1|CNS0A1ML Arabidopsis thaliana Full-length cD... 50 4e-004
dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosom... 50 4e-004
ref|NM_125870.2| Arabidopsis thaliana CESA6 (CELLULASE SYNT... 50 4e-004
gb|CW840637.1|CW840637 ET10337.Ds3.06.12.2002.jw43.284 Arab... 46 0.007
gb|BT005743.1| Arabidopsis thaliana clone RAFL15-50-B21 (R5... 46 0.007
emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome... 46 0.007
emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosom... 46 0.007
ref|NM_119980.2| Arabidopsis thaliana ATCSLD4; cellulose sy... 46 0.007
gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX... 44 0.027
gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R5... 44 0.027
gb|BT006111.1| Arabidopsis thaliana clone U50150 putative c... 44 0.027
ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNT... 44 0.027
>dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH9
Length = 82390
Score = 89.7 bits (45), Expect = 5e-016
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||| ||||| || |||||||| ||| |||||||||||| |||||||||||
Sbjct: 28095 aaaataccattcgggagctcgtggctcgatagtgtatttcttacagaaaggaacccattt 28036
Query: 432 tcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatc 491
| ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 28035 cctagcaaactctgctgtttctgaaagggcttcaaaagtaagcatagcagcaccatcatc 27976
Query: 492 cgacacata 500
|| |||||
Sbjct: 27975 agaaacata 27967
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 89.7 bits (45), Expect = 5e-016
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||| ||||| || |||||||| ||| |||||||||||| |||||||||||
Sbjct: 2894417 aaaataccattcgggagctcgtggctcgatagtgtatttcttacagaaaggaacccattt 2894358
Query: 432 tcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatc 491
| ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 2894357 cctagcaaactctgctgtttctgaaagggcttcaaaagtaagcatagcagcaccatcatc 2894298
Query: 492 cgacacata 500
|| |||||
Sbjct: 2894297 agaaacata 2894289
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 5492271 tttcttacagaagggaacccattttcttgcaaa 5492303
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 22908811 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 22908752
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 22908751 ggataatcaacagcaagaatagacaa 22908726
>ref|NM_121024.1| Arabidopsis thaliana CESA5 (CELLULASE SYNTHASE 5); transferase,
transferring glycosyl groups AT5G09870 (CESA5) mRNA,
complete cds
Length = 3210
Score = 89.7 bits (45), Expect = 5e-016
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||| ||||| || |||||||| ||| |||||||||||| |||||||||||
Sbjct: 1266 aaaataccattcgggagctcgtggctcgatagtgtatttcttacagaaaggaacccattt 1207
Query: 432 tcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatc 491
| ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 1206 cctagcaaactctgctgtttctgaaagggcttcaaaagtaagcatagcagcaccatcatc 1147
Query: 492 cgacacata 500
|| |||||
Sbjct: 1146 agaaacata 1138
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 89.7 bits (45), Expect = 5e-016
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||| ||||| || |||||||| ||| |||||||||||| |||||||||||
Sbjct: 3075332 aaaataccattcgggagctcgtggctcgatagtgtatttcttacagaaaggaacccattt 3075273
Query: 432 tcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagcattgcagcaccatcatc 491
| ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 3075272 cctagcaaactctgctgtttctgaaagggcttcaaaagtaagcatagcagcaccatcatc 3075213
Query: 492 cgacacata 500
|| |||||
Sbjct: 3075212 agaaacata 3075204
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 5739298 tttcttacagaagggaacccattttcttgcaaa 5739330
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 25900724 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 25900665
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 25900664 ggataatcaacagcaagaatagacaa 25900639
>gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete
sequence
Length = 107848
Score = 65.9 bits (33), Expect = 7e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||||||||| || |||||||| || ||||||||||| |||||||||||
Sbjct: 17836 aaaataccattcaggagcgcgtggctcgatgctgaacttcttacagaaaggaacccattt 17777
Query: 432 tcgtgcaaa 440
|| ||||||
Sbjct: 17776 tcttgcaaa 17768
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacata 500
|||||||| ||||||||||||||||||||||| || |||||
Sbjct: 17748 gcttcaaatgtaagcattgcagcaccatcatctgatacata 17708
>ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNTHASE 9); transferase,
transferring glycosyl groups AT2G21770 (CESA9) mRNA,
complete cds
Length = 3308
Score = 65.9 bits (33), Expect = 7e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||||||||| || |||||||| || ||||||||||| |||||||||||
Sbjct: 1320 aaaataccattcaggagcgcgtggctcgatgctgaacttcttacagaaaggaacccattt 1261
Query: 432 tcgtgcaaa 440
|| ||||||
Sbjct: 1260 tcttgcaaa 1252
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacata 500
|||||||| ||||||||||||||||||||||| || |||||
Sbjct: 1232 gcttcaaatgtaagcattgcagcaccatcatctgatacata 1192
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 65.9 bits (33), Expect = 7e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 372 aaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacccattt 431
|||||||||||||||||| || |||||||| || ||||||||||| |||||||||||
Sbjct: 9293993 aaaataccattcaggagcgcgtggctcgatgctgaacttcttacagaaaggaacccattt 9293934
Query: 432 tcgtgcaaa 440
|| ||||||
Sbjct: 9293933 tcttgcaaa 9293925
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacata 500
|||||||| ||||||||||||||||||||||| || |||||
Sbjct: 9293905 gcttcaaatgtaagcattgcagcaccatcatctgatacata 9293865
>gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX1)
mRNA, complete cds
Length = 2958
Score = 63.9 bits (32), Expect = 3e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagga 522
||||||| ||||||||||||||||||||| || |||||||| | |||||||| || |||
Sbjct: 935 tcaaaagaaagcattgcagcaccatcatcagatacatagcaagagactttatccaccgga 876
Query: 523 taat 526
||||
Sbjct: 875 taat 872
>gb|AQ955592.1|AQ955592 LERAE88TF LERA Arabidopsis thaliana genomic clone LERAE88, DNA
sequence
Length = 694
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 463 tcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaacagga 522
||||||| ||||||||||||||||||||| || |||||||| | |||||||| || |||
Sbjct: 63 tcaaaagaaagcattgcagcaccatcatcagatacatagcaagagactttatccaccgga 4
Query: 523 taa 525
|||
Sbjct: 3 taa 1
>gb|AF091713.1|AF091713 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3)
gene, complete cds
Length = 7234
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 2203 tttcttacagaagggaacccattttcttgcaaa 2171
>gb|AF088917.1|AF088917 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3)
mRNA, complete cds
Length = 3081
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 1152 tttcttacagaagggaacccattttcttgcaaa 1120
>gb|AY139754.1| Arabidopsis thaliana AT5g17420/T10B6_80 mRNA, complete cds
Length = 3355
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 1197 tttcttacagaagggaacccattttcttgcaaa 1165
>gb|BT004543.1| Arabidopsis thaliana AT5g17420/T10B6_80 gene, complete cds
Length = 3081
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 1152 tttcttacagaagggaacccattttcttgcaaa 1120
>emb|AL391142.1|ATT10B6 Arabidopsis thaliana DNA chromosome 5, BAC clone T10B6 (ESSA project)
Length = 33563
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 23100 tttcttacagaagggaacccattttcttgcaaa 23132
>ref|NM_121748.2| Arabidopsis thaliana IRX3 (IRREGULAR XYLEM 3); cellulose synthase
AT5G17420 (IRX3) mRNA, complete cds
Length = 3693
Score = 58.0 bits (29), Expect = 2e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 408 tttcttacagaagggaacccattttcgtgcaaa 440
|||||||||||||||||||||||||| ||||||
Sbjct: 1197 tttcttacagaagggaacccattttcttgcaaa 1165
>gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like protein (At4g18780)
mRNA, complete cds
Length = 3109
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 994 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 939
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 6228106 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 6228161
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 14212066 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 14212007
Query: 424 acccattttc 433
||||||||||
Sbjct: 14212006 acccattttc 14211997
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 13824547 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 13824606
Query: 102 ata 104
|||
Sbjct: 13824607 ata 13824609
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
Length = 94301
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 74208 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 74263
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 93489 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 93544
>ref|NM_117994.2| Arabidopsis thaliana CESA8 (CELLULASE SYNTHASE 8); cellulose
synthase/ transferase, transferring glycosyl groups
AT4G18780 (CESA8) mRNA, complete cds
Length = 3217
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 994 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 939
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 56.0 bits (28), Expect = 7e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 471 aagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataat 526
||||||||||||||||||||| || |||||||| | |||||||| || |||||||
Sbjct: 10315361 aagcattgcagcaccatcatcagatacatagcaagagactttatccaccggataat 10315416
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 18299266 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 18299207
Query: 424 acccattttc 433
||||||||||
Sbjct: 18299206 acccattttc 18299197
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 17911752 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 17911811
Query: 102 ata 104
|||
Sbjct: 17911812 ata 17911814
>gb|AF027173.1|AF027173 Arabidopsis thaliana cellulose synthase catalytic subunit (Ath-A)
mRNA, complete cds
Length = 3771
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 1529 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 1470
Query: 424 acccattttc 433
||||||||||
Sbjct: 1469 acccattttc 1460
>dbj|BD022675.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 5009
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 3060 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 3001
Query: 424 acccattttc 433
||||||||||
Sbjct: 3000 acccattttc 2991
>emb|AX505864.1| Sequence 559 from Patent WO0216655
Length = 3255
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 1313 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 1254
Query: 424 acccattttc 433
||||||||||
Sbjct: 1253 acccattttc 1244
>emb|AX030941.1| Sequence 4 from Patent WO9800549
Length = 5009
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 3060 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 3001
Query: 424 acccattttc 433
||||||||||
Sbjct: 3000 acccattttc 2991
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project)
Length = 89035
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 81964 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 81905
Query: 424 acccattttc 433
||||||||||
Sbjct: 81904 acccattttc 81895
>emb|AL161595.2|ATCHRIV91 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91
Length = 198151
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 19441 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 19382
Query: 424 acccattttc 433
||||||||||
Sbjct: 19381 acccattttc 19372
>ref|NM_120095.2| Arabidopsis thaliana CESA2; cellulose synthase/ transferase,
transferring glycosyl groups AT4G39350 (CESA2) mRNA,
complete cds
Length = 3726
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 1482 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 1423
Query: 424 acccattttc 433
||||||||||
Sbjct: 1422 acccattttc 1413
>gb|AQ955593.1|AQ955593 LERAE88TR LERA Arabidopsis thaliana genomic clone LERAE88, DNA
sequence
Length = 813
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 463 tcaaaagtaagcattgcagcaccatcatc 491
||||||| |||||||||||||||||||||
Sbjct: 783 tcaaaagaaagcattgcagcaccatcatc 811
>gb|AV823575.1|AV823575 AV823575 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-21-E11 5',
mRNA sequence
Length = 582
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 182 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 123
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 122 ggataatcaacagcaagaatagacaa 97
>gb|AF062485.1|AF062485 Arabidopsis thaliana cellulose synthase mRNA, partial cds
Length = 3444
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 1206 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 1147
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 1146 ggataatcaacagcaagaatagacaa 1121
>dbj|BD022677.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 3828
Score = 50.1 bits (25), Expect = 4e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 1551 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 1492
Query: 424 acccatttt 432
|||||||||
Sbjct: 1491 acccatttt 1483
>emb|AX507835.1| Sequence 2530 from Patent WO0216655
Length = 3255
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 1214 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 1155
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 1154 ggataatcaacagcaagaatagacaa 1129
>emb|AX030944.1| Sequence 7 from Patent WO9800549
Length = 3828
Score = 50.1 bits (25), Expect = 4e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 364 ttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaaggga 423
||||||| ||||||||| |||||||| || |||||||| || |||||||| || |||
Sbjct: 1551 ttctgagaaaaataccactcaggagctcgtggctcgatattaaacttcttacaaaaagga 1492
Query: 424 acccatttt 432
|||||||||
Sbjct: 1491 acccatttt 1483
>emb|BX832166.1|CNS0A1ML Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3911
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 1641 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 1582
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 1581 ggataatcaacagcaagaatagacaa 1556
>dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVP7
Length = 39645
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 20478 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 20419
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 20418 ggataatcaacagcaagaatagacaa 20393
>ref|NM_125870.2| Arabidopsis thaliana CESA6 (CELLULASE SYNTHASE 6); transferase,
transferring glycosyl groups AT5G64740 (CESA6) mRNA,
complete cds
Length = 4105
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
||||| ||||||||||| |||||||||||||| || || || || ||| ||||| |||
Sbjct: 1703 gcttcgaaagtaagcatagcagcaccatcatcagatacgtaacaagcaaccttatcgaca 1644
Query: 520 ggataatnnacagcnagtatggacaa 545
||||||| ||||| || || |||||
Sbjct: 1643 ggataatcaacagcaagaatagacaa 1618
>gb|CW840637.1|CW840637 ET10337.Ds3.06.12.2002.jw43.284 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET10337, DNA sequence
Length = 284
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 231 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 172
Query: 102 ata 104
|||
Sbjct: 171 ata 169
>gb|BT005743.1| Arabidopsis thaliana clone RAFL15-50-B21 (R50044) unknown protein
(At4g38190) mRNA, partial cds
Length = 3414
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 1667 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 1608
Query: 102 ata 104
|||
Sbjct: 1607 ata 1605
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project)
Length = 147215
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 99776 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 99835
Query: 102 ata 104
|||
Sbjct: 99836 ata 99838
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
Length = 199789
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 20698 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 20757
Query: 102 ata 104
|||
Sbjct: 20758 ata 20760
>ref|NM_119980.2| Arabidopsis thaliana ATCSLD4; cellulose synthase/ transferase,
transferring glycosyl groups AT4G38190 (ATCSLD4) mRNA,
complete cds
Length = 3513
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 42 tgcattcaaggcaccagcttttttatgatgatcatgtccaggccttttctcacgtgaaac 101
|||||||| ||| |||||||| || | ||||||| |||||||| ||||||||||| ||
Sbjct: 1782 tgcattcatggctccagctttcttgttgtgatcatatccaggccgcttctcacgtgacac 1723
Query: 102 ata 104
|||
Sbjct: 1722 ata 1720
>gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX5) mRNA, complete cds
Length = 3168
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
|||||||| |||||||||||||||||
Sbjct: 1208 aattcttcatattctctcttcattgc 1183
>gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R50150) putative cellulose
synthase catalytic subunit (At5g44030) mRNA, complete cds
Length = 3377
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
|||||||| |||||||||||||||||
Sbjct: 1276 aattcttcatattctctcttcattgc 1251
>gb|BT006111.1| Arabidopsis thaliana clone U50150 putative cellulose synthase
catalytic subunit (At5g44030) mRNA, complete cds
Length = 3181
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
|||||||| |||||||||||||||||
Sbjct: 1205 aattcttcatattctctcttcattgc 1180
>ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNTHASE 4); transferase,
transferring glycosyl groups AT5G44030 (CESA4) mRNA,
complete cds
Length = 3745
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
|||||||| |||||||||||||||||
Sbjct: 1273 aattcttcatattctctcttcattgc 1248
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,687
Number of Sequences: 1013581
Number of extensions: 284687
Number of successful extensions: 19590
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 18303
Number of HSP's gapped (non-prelim): 1287
length of query: 593
length of database: 908,940,872
effective HSP length: 20
effective length of query: 573
effective length of database: 888,669,252
effective search space: 509207481396
effective search space used: 509207481396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)