BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL486704.1|CL486704 SAIL_440_E05.v1 SAIL Collection Arab... 38 0.42
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 38 0.42
gb|AC006136.4| Arabidopsis thaliana chromosome 2 clone T13H... 38 0.42
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 38 0.42
>gb|CL486704.1|CL486704 SAIL_440_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_440_E05.v1, DNA sequence
Length = 901
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 cacagaaaaatttcctctt 42
|||||||||||||||||||
Sbjct: 658 cacagaaaaatttcctctt 640
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 38.2 bits (19), Expect = 0.42
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 139 aggtacctgcc-gggcggccgctcgaa 164
||||||||||| |||||||||||||||
Sbjct: 395 aggtacctgcccgggcggccgctcgaa 421
>gb|AC006136.4| Arabidopsis thaliana chromosome 2 clone T13H18 map GPC6, complete
sequence
Length = 82098
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 gcaaaacaaagctcgttgt 80
|||||||||||||||||||
Sbjct: 60999 gcaaaacaaagctcgttgt 61017
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 gcaaaacaaagctcgttgt 80
|||||||||||||||||||
Sbjct: 4471605 gcaaaacaaagctcgttgt 4471623
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,708
Number of Sequences: 1013581
Number of extensions: 88708
Number of successful extensions: 23631
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23487
Number of HSP's gapped (non-prelim): 146
length of query: 164
length of database: 908,940,872
effective HSP length: 19
effective length of query: 145
effective length of database: 889,682,833
effective search space: 129004010785
effective search space used: 129004010785
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)