BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY133724.1| Arabidopsis thaliana unknown protein (At1g26... 50 4e-004
ref|NM_102445.2| Arabidopsis thaliana transferase, transfer... 50 4e-004
gb|BH170042.1|BH170042 SALK_002287 Arabidopsis thaliana TDN... 48 0.002
gb|CW835798.1|CW835798 ET6298.Ds5.06.13.00.b.526 Arabidopsi... 48 0.002
gb|AV800587.1|AV800587 AV800587 RAFL9 Arabidopsis thaliana ... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|AV786020.1|AV786020 AV786020 RAFL6 Arabidopsis thaliana ... 42 0.10
gb|BP663187.1|BP663187 BP663187 RAFL21 Arabidopsis thaliana... 40 0.41
>gb|AY133724.1| Arabidopsis thaliana unknown protein (At1g26810) mRNA, complete cds
Length = 2454
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcctca 548
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||||
Sbjct: 1951 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcctca 1895
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 2144 ttggtaatgagcaaccacataaccatccttgcatcc 2109
>ref|NM_102445.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G26810 mRNA,
complete cds
Length = 2438
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcctca 548
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||||
Sbjct: 1951 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcctca 1895
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 2144 ttggtaatgagcaaccacataaccatccttgcatcc 2109
>gb|BH170042.1|BH170042 SALK_002287 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_002287, DNA sequence
Length = 433
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 135 ttggtaatgagcaaccacataaccatccttgcatcc 170
>gb|CW835798.1|CW835798 ET6298.Ds5.06.13.00.b.526 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET6298, DNA sequence
Length = 526
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 130 ttggtaatgagcaaccacataaccatccttgcatcc 165
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcct 546
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||
Sbjct: 413 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcct 467
>gb|AV800587.1|AV800587 AV800587 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-24-L19 3',
mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 295 ttggtaatgagcaaccacataaccatccttgcatcc 330
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 9295544 ttggtaatgagcaaccacataaccatccttgcatcc 9295579
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcct 546
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||
Sbjct: 9295827 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcct 9295881
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
complete sequence
Length = 98630
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 86695 ttggtaatgagcaaccacataaccatccttgcatcc 86730
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcct 546
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||
Sbjct: 86978 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcct 87032
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 299 ttggtaatgagcaatcacatagccatcctcgcatcc 334
|||||||||||||| |||||| ||||||| ||||||
Sbjct: 9286924 ttggtaatgagcaaccacataaccatccttgcatcc 9286959
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 492 acaatatatcctggtccatgcgcccagggaggataactctcctcaggccattcct 546
||||| || ||||| ||||||||||| || ||||| |||| |||||||||||||
Sbjct: 9287207 acaatgtagcctggaccatgcgcccatggtggatatttctcttcaggccattcct 9287261
>gb|AV786020.1|AV786020 AV786020 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-69-G02 3',
mRNA sequence
Length = 407
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 acaaacttgaagatatccaaa 76
|||||||||||||||||||||
Sbjct: 374 acaaacttgaagatatccaaa 394
>gb|BP663187.1|BP663187 BP663187 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-47-B11 3',
mRNA sequence
Length = 397
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 542 ttcctcaggggttatgtacc 561
||||||||||||||||||||
Sbjct: 225 ttcctcaggggttatgtacc 244
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 382,264
Number of Sequences: 1013581
Number of extensions: 382264
Number of successful extensions: 36070
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35680
Number of HSP's gapped (non-prelim): 390
length of query: 577
length of database: 908,940,872
effective HSP length: 20
effective length of query: 557
effective length of database: 888,669,252
effective search space: 494988773364
effective search space used: 494988773364
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)