BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|B26159.1|B26159 T1J8TFB TAMU Arabidopsis thaliana genomi... 52 1e-004
gb|CK121512.1|CK121512 202n12.p1 AtM1 Arabidopsis thaliana ... 52 1e-004
gb|BT002950.1| Arabidopsis thaliana clone RAFL15-04-A19 (R2... 52 1e-004
gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N1... 52 1e-004
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 52 1e-004
ref|NM_001036421.1| Arabidopsis thaliana unknown protein AT... 52 1e-004
ref|NM_001036422.1| Arabidopsis thaliana unknown protein AT... 52 1e-004
ref|NM_129261.4| Arabidopsis thaliana kinase AT2G37050 tran... 52 1e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 52 1e-004
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 50 5e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.031
emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome... 44 0.031
ref|NM_114578.1| Arabidopsis thaliana ATP binding / kinase/... 44 0.031
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.031
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 42 0.12
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 42 0.12
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 42 0.12
emb|AL771314.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.48
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.48
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.48
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 40 0.48
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 40 0.48
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.48
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 40 0.48
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.48
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.48
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.48
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 40 0.48
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.48
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 40 0.48
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 40 0.48
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.48
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.48
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.48
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 40 0.48
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.48
dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.48
>gb|B26159.1|B26159 T1J8TFB TAMU Arabidopsis thaliana genomic clone T1J8, DNA sequence
Length = 679
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 637 gtcccattgtgcatgaactcatacacaagcatgttttt 674
>gb|CK121512.1|CK121512 202n12.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011N12202
5-PRIME, mRNA sequence
Length = 800
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 364 gtcccattgtgcatgaactcatacacaagcatgttttt 327
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 175 ccatagtatacgattccaaaacctcccgacccaattct 138
>gb|BT002950.1| Arabidopsis thaliana clone RAFL15-04-A19 (R20321) putative receptor
protein kinase (At2g37050) mRNA, complete cds
Length = 3224
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 2210 gtcccattgtgcatgaactcatacacaagcatgttttt 2173
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 2021 ccatagtatacgattccaaaacctcccgacccaattct 1984
>gb|AC006260.4| Arabidopsis thaliana chromosome 2 clone T2N18 map ve018, complete
sequence
Length = 80736
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 66591 gtcccattgtgcatgaactcatacacaagcatgttttt 66628
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 66873 ccatagtatacgattccaaaacctcccgacccaattct 66910
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence
Length = 134151
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 133547 gtcccattgtgcatgaactcatacacaagcatgttttt 133510
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 133265 ccatagtatacgattccaaaacctcccgacccaattct 133228
>ref|NM_001036421.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant
AT2G37050.2 mRNA, complete cds
Length = 3430
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 2352 gtcccattgtgcatgaactcatacacaagcatgttttt 2315
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 2163 ccatagtatacgattccaaaacctcccgacccaattct 2126
>ref|NM_001036422.1| Arabidopsis thaliana unknown protein AT2G37050 transcript variant
AT2G37050.3 mRNA, complete cds
Length = 3358
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 2355 gtcccattgtgcatgaactcatacacaagcatgttttt 2318
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 2166 ccatagtatacgattccaaaacctcccgacccaattct 2129
>ref|NM_129261.4| Arabidopsis thaliana kinase AT2G37050 transcript variant AT2G37050.1
mRNA, complete cds
Length = 3355
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 2352 gtcccattgtgcatgaactcatacacaagcatgttttt 2315
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 2163 ccatagtatacgattccaaaacctcccgacccaattct 2126
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 291 gtcccattatgcatgaactcatacactagtatgttttt 328
|||||||| ||||||||||||||||| || ||||||||
Sbjct: 15579447 gtcccattgtgcatgaactcatacacaagcatgttttt 15579410
Score = 40.1 bits (20), Expect = 0.48
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 480 ccatagtatactatgccaaagcctccngncccaattct 517
||||||||||| || ||||| ||||| | |||||||||
Sbjct: 15579165 ccatagtatacgattccaaaacctcccgacccaattct 15579128
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactctgg 25
|||||||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtactctgg 377
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 294 ccattatgcatgaactcatacactag 319
|||||| |||||||||||||||||||
Sbjct: 17311933 ccattaggcatgaactcatacactag 17311958
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 ccaattcttctctcaaattt 529
||||||||||||||||||||
Sbjct: 5162005 ccaattcttctctcaaattt 5161986
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12
Length = 140680
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 294 ccattatgcatgaactcatacactag 319
|||||| |||||||||||||||||||
Sbjct: 65314 ccattaggcatgaactcatacactag 65339
>ref|NM_114578.1| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine
kinase AT3G47110 mRNA, complete cds
Length = 3078
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 294 ccattatgcatgaactcatacactag 319
|||||| |||||||||||||||||||
Sbjct: 2411 ccattaggcatgaactcatacactag 2386
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 294 ccattatgcatgaactcatacactag 319
|||||| |||||||||||||||||||
Sbjct: 17358871 ccattaggcatgaactcatacactag 17358896
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 ccaattcttctctcaaattt 529
||||||||||||||||||||
Sbjct: 5173806 ccaattcttctctcaaattt 5173787
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtact 52
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtact 328
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtact 331
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtact 122
>emb|AL771314.1| Arabidopsis thaliana T-DNA flanking sequence GK-179B09-013563,
genomic survey sequence
Length = 273
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 510 ccaattcttctctcaaattt 529
||||||||||||||||||||
Sbjct: 64 ccaattcttctctcaaattt 83
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtac 52
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtac 199
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtac 239
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 304
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtac 170
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtac 436
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtac 84
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtac 59
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtac 33
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtac 366
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtac 224
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtac 213
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtac 397
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtac 278
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtac 452
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtac 247
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
>dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4
Length = 65047
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 510 ccaattcttctctcaaattt 529
||||||||||||||||||||
Sbjct: 53290 ccaattcttctctcaaattt 53271
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 264,246
Number of Sequences: 1013581
Number of extensions: 264246
Number of successful extensions: 20338
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19666
Number of HSP's gapped (non-prelim): 672
length of query: 681
length of database: 908,940,872
effective HSP length: 20
effective length of query: 661
effective length of database: 888,669,252
effective search space: 587410375572
effective search space used: 587410375572
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)