BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD534456.1|CD534456 39G7 Arabidopsis Leaf Senescence Lib... 64 2e-008
emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase 60 2e-007
gb|CB256112.1|CB256112 01-E012742-027-007-A02-T7R MPIZ-ADIS... 56 4e-006
gb|CB260037.1|CB260037 04-E011178-013-009-H01-T7R MPIZ-ADIS... 56 4e-006
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 56 4e-006
gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltra... 56 4e-006
emb|AX506925.1| Sequence 1620 from Patent WO0216655 56 4e-006
emb|AX651931.1| Sequence 808 from Patent WO03000898 56 4e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 56 4e-006
ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHAS... 56 4e-006
ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNT... 56 4e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 56 4e-006
gb|CB254324.1|CB254324 72-E018427-019-008-O17-T7R MPIZ-ADIS... 54 1e-005
gb|AY034958.1| Arabidopsis thaliana putative sucrose syntha... 54 1e-005
ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransfera... 54 1e-005
gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III ... 42 0.056
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.056
emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome ... 42 0.056
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.056
>gb|CD534456.1|CD534456 39G7 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 383
Score = 63.9 bits (32), Expect = 2e-008
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| ||||| || || || | | ||
Sbjct: 258 caagcctgaccttatcattggtaactacagtgatggaaaccttgttgcttctttattggc 317
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaa 269
||||| | || ||||||||||||||||| |||||||| |||||||
Sbjct: 318 tcacaaacttggtgtcactcagtgtaccattgctcatgctctggagaa 365
>emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase
Length = 5007
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacct 203
||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 3289 caagcctgaccttatcattggtaactacagtgatggaaacct 3330
>gb|CB256112.1|CB256112 01-E012742-027-007-A02-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772A027Q 5-PRIME, mRNA sequence
Length = 684
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||||||||||||||| |||||||| |||||
Sbjct: 582 caagcctgaccttatcattggtaactacagtgatgg 617
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgc 260
||||||||||||||||| ||||||||
Sbjct: 655 gtcactcagtgtaccattgctcatgc 680
>gb|CB260037.1|CB260037 04-E011178-013-009-H01-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770H019Q 5-PRIME, mRNA sequence
Length = 456
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 183 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 242
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 243 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 302
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||||||||||||||| |||||||| |||||
Sbjct: 85215 caagcctgaccttatcattggtaactacagtgatgg 85180
>gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltransferase (At5g20830)
mRNA, complete cds
Length = 1942
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 1305 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 1364
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 1365 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 1424
>emb|AX506925.1| Sequence 1620 from Patent WO0216655
Length = 2427
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 1218 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 1277
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 1278 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 1337
>emb|AX651931.1| Sequence 808 from Patent WO03000898
Length = 2427
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 1218 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 1277
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 1278 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 1337
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||||||||||||||| |||||||| |||||
Sbjct: 6764765 caagcctgaccttatcattggtaactacagtgatgg 6764730
>ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.1 mRNA, complete cds
Length = 2887
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 1305 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 1364
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 1365 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 1424
>ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.2 mRNA, complete cds
Length = 2879
Score = 56.0 bits (28), Expect = 4e-006
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgc 221
||||||||||||||||||||| |||||||| ||||| || || || || || | | ||
Sbjct: 1297 caagcctgaccttatcattggtaactacagtgatggaaatcttgttgcttctttattggc 1356
Query: 222 gcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 281
||||| | || ||||||||||||||||| |||||||| | |||||||| || |||||
Sbjct: 1357 tcacaaacttggtgtcactcagtgtaccattgctcatgctcttgagaaaacaaagtaccc 1416
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||||||||||||||| |||||||| |||||
Sbjct: 7052235 caagcctgaccttatcattggtaactacagtgatgg 7052200
>gb|CB254324.1|CB254324 72-E018427-019-008-O17-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O178Q 5-PRIME, mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgccttggagaa 269
||||||||||| |||||||||||||| ||||||||
Sbjct: 212 gtcactcagtgcaccatcgctcatgctttggagaa 246
>gb|AY034958.1| Arabidopsis thaliana putative sucrose synthase (At3g43190) mRNA,
complete cds
Length = 1798
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgccttggagaa 269
||||||||||| |||||||||||||| ||||||||
Sbjct: 508 gtcactcagtgcaccatcgctcatgctttggagaa 542
>ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT3G43190 mRNA,
complete cds
Length = 2717
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 235 gtcactcagtgtaccatcgctcatgccttggagaa 269
||||||||||| |||||||||||||| ||||||||
Sbjct: 1444 gtcactcagtgcaccatcgctcatgctttggagaa 1478
>gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III clone TAMU-T15O15, *** SEQUENCING
IN PROGRESS ***, 3 unordered pieces
Length = 80970
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaa 269
||||| |||||||||||||| ||||||||
Sbjct: 9918 cagtgcaccatcgctcatgctttggagaa 9946
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaa 269
||||| |||||||||||||| ||||||||
Sbjct: 15144732 cagtgcaccatcgctcatgctttggagaa 15144704
>emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F7K15
Length = 110800
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaa 269
||||| |||||||||||||| ||||||||
Sbjct: 16330 cagtgcaccatcgctcatgctttggagaa 16302
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 241 cagtgtaccatcgctcatgccttggagaa 269
||||| |||||||||||||| ||||||||
Sbjct: 15191679 cagtgcaccatcgctcatgctttggagaa 15191651
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,595
Number of Sequences: 1013581
Number of extensions: 93595
Number of successful extensions: 5724
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5565
Number of HSP's gapped (non-prelim): 159
length of query: 319
length of database: 908,940,872
effective HSP length: 19
effective length of query: 300
effective length of database: 889,682,833
effective search space: 266904849900
effective search space used: 266904849900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)