BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063O07F020916.3.1
(657 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH254952.1|BH254952 SALK_017454 Arabidopsis thaliana TDN... 40 0.47
gb|BH850871.1|BH850871 SALK_071995.55.00.x Arabidopsis thal... 40 0.47
gb|CL493779.1|CL493779 SAIL_585_B05.v2 SAIL Collection Arab... 40 0.47
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 40 0.47
dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.47
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.47
emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome... 40 0.47
emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome... 40 0.47
emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosom... 40 0.47
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.47
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.47
>gb|BH254952.1|BH254952 SALK_017454 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_017454, DNA sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tttctcgttttcgaaatttt 416
||||||||||||||||||||
Sbjct: 359 tttctcgttttcgaaatttt 378
>gb|BH850871.1|BH850871 SALK_071995.55.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_071995.55.00.x,
DNA sequence
Length = 299
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 397 tttctcgttttcgaaatttt 416
||||||||||||||||||||
Sbjct: 228 tttctcgttttcgaaatttt 247
>gb|CL493779.1|CL493779 SAIL_585_B05.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_585_B05.v2, DNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 333 ccatccttccctccctccct 314
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 3084347 ccatccttccctccctccct 3084366
>dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH9
Length = 82390
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tttctcgttttcgaaatttt 416
||||||||||||||||||||
Sbjct: 45158 tttctcgttttcgaaatttt 45139
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tttctcgttttcgaaatttt 416
||||||||||||||||||||
Sbjct: 2911480 tttctcgttttcgaaatttt 2911461
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA
project)
Length = 107600
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 4933 ccatccttccctccctccct 4952
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project)
Length = 90824
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 85251 ccatccttccctccctccct 85270
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
Length = 190026
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 28763 ccatccttccctccctccct 28782
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 ccatccttccctccctccct 73
||||||||||||||||||||
Sbjct: 7171609 ccatccttccctccctccct 7171628
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 397 tttctcgttttcgaaatttt 416
||||||||||||||||||||
Sbjct: 3092395 tttctcgttttcgaaatttt 3092376
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 391,403
Number of Sequences: 1013581
Number of extensions: 391403
Number of successful extensions: 26050
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25442
Number of HSP's gapped (non-prelim): 608
length of query: 657
length of database: 908,940,872
effective HSP length: 20
effective length of query: 637
effective length of database: 888,669,252
effective search space: 566082313524
effective search space used: 566082313524
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)