BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana ... 86 9e-015
gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flower... 86 9e-015
gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana... 86 9e-015
gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana... 86 9e-015
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 86 9e-015
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 86 9e-015
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 86 9e-015
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 86 9e-015
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 86 9e-015
gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana... 78 2e-012
gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana... 70 5e-010
gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana... 68 2e-009
gb|BE521313.1|BE521313 M18H6STM Arabidopsis developing seed... 66 8e-009
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 60 5e-007
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 60 5e-007
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 60 5e-007
gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing see... 58 2e-006
gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana ... 58 2e-006
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 58 2e-006
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 58 2e-006
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 58 2e-006
emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cD... 58 2e-006
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 58 2e-006
gb|BP807146.1|BP807146 BP807146 RAFL16 Arabidopsis thaliana... 56 8e-006
gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|Z48610.1|Z48610 ATTS4680 Gif-SeedA Arabidopsis thaliana ... 46 0.008
>gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-D11 5',
mRNA sequence
Length = 602
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 264 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 323
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 324 gggtttgaagctggtgggc 342
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 480 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 536
>gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 5PRIM, mRNA sequence
Length = 1098
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 249 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 308
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 309 gggtttgaagctggtgggc 327
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 465 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 521
>gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-D18 5',
mRNA sequence
Length = 401
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 262 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 321
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 322 gggtttgaagctggtgggc 340
>gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-J09 5',
mRNA sequence
Length = 393
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 263 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 322
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 323 gggtttgaagctggtgggc 341
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 264 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 323
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 324 gggtttgaagctggtgggc 342
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 480 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 536
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 190 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 249
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 250 gggtttgaagctggtgggc 268
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 406 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 462
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 398 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 457
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 458 gggtttgaagctggtgggc 476
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 614 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 670
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 441 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 500
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 501 gggtttgaagctggtgggc 519
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 657 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 713
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 85.7 bits (43), Expect = 9e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 437 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 496
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 497 gggtttgaagctggtgggc 515
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 653 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 709
>gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-07-A09 5',
mRNA sequence
Length = 415
Score = 77.8 bits (39), Expect = 2e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| ||||| |||
Sbjct: 319 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaaaaga 378
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 379 gggtttgaagctggtgggc 397
>gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-99-J11 5',
mRNA sequence
Length = 470
Score = 69.9 bits (35), Expect = 5e-010
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| | |||||||
Sbjct: 393 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgt-accaacaga 451
Query: 262 ggatttgaggctggtgggc 280
|| ||||| ||||||||||
Sbjct: 452 gggtttgaagctggtgggc 470
>gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-03-M02 5',
mRNA sequence
Length = 376
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 314 ttcgaggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacaga 373
Query: 262 gg 263
||
Sbjct: 374 gg 375
>gb|BE521313.1|BE521313 M18H6STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M18H6 5', mRNA sequence
Length = 364
Score = 65.9 bits (33), Expect = 8e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatgaacattgaa 483
||||||||||||||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 68 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatgaatattgaa 124
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||||
Sbjct: 52121 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagagg 52178
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatg 474
||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 52460 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatg 52507
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||||
Sbjct: 3384128 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagagg 3384185
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatg 474
||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 3384467 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatg 3384514
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| || ||||| || ||||| || ||||| |||||||||||
Sbjct: 3364292 aggagatcaaccatgctggtgccggtggattatgggccgaacttgttagcaacagagg 3364235
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 427 tgtccatcgggaggtgttggggtctataatcctggctactggggcatg 474
||||||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct: 3363953 tgtccatcgggaggtgtcggagtttataaccctggttactggggcatg 3363906
>gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M24F11 5', mRNA sequence
Length = 390
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||||| ||||||
Sbjct: 313 ggaggagtcggggtttataacccgggttactggggcatgaacattgaaaaagggaag 369
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 76 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 135
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 136 gttagcaatagaggatttgaagctggtgg 164
>gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-83-O18 5',
mRNA sequence
Length = 655
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 251 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 310
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 311 gttagcaatagaggatttgaagctggtgg 339
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||| | ||||||
Sbjct: 488 ggaggagtcggggtttataacccgggttactggggcatgaacattgaagaagggaag 544
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 250 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 309
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 310 gttagcaatagaggatttgaagctggtgg 338
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||| | ||||||
Sbjct: 487 ggaggagtcggggtttataacccgggttactggggcatgaacattgaagaagggaag 543
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 175 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 234
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 235 gttagcaatagaggatttgaagctggtgg 263
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||| | ||||||
Sbjct: 412 ggaggagtcggggtttataacccgggttactggggcatgaacattgaagaagggaag 468
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 180 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 239
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 240 gttagcaatagaggatttgaagctggtgg 268
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||| | ||||||
Sbjct: 417 ggaggagtcggggtttataacccgggttactggggcatgaacattgaagaagggaag 473
>emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL67ZG12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 588
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 237 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 296
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 297 gttagcaatagaggatttgaagctggtgg 325
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| ||||| || ||||| || || ||||||||||| ||||| | ||||| || |||
Sbjct: 250 tttgggatcttctttgaggaaataaatcatgctggagcaggtggactatgggctgaactt 309
Query: 250 gtaagcaacagaggatttgaggctggtgg 278
|| ||||| ||||||||||| ||||||||
Sbjct: 310 gttagcaatagaggatttgaagctggtgg 338
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatgaacattgaaaaggggaag 492
||||| || ||||| ||||| || || ||||||||||||||||||||| | ||||||
Sbjct: 487 ggaggagtcggggtttataacccgggttactggggcatgaacattgaagaagggaag 543
>gb|BP807146.1|BP807146 BP807146 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-J15 5',
mRNA sequence
Length = 392
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||| ||||||||||| || ||||| || ||||| || ||||| || ||||||
Sbjct: 322 ttcgaggagataaaccatgctggtgccggtggattatgggccgaacttgttagaaacaga 381
Query: 262 ggatttga 269
|| |||||
Sbjct: 382 gggtttga 389
>gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-98-B07 5',
mRNA sequence
Length = 390
Score = 52.0 bits (26), Expect = 1e-004
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||| ||||||| || ||||| || ||||| || ||||| |||||||||
Sbjct: 320 ttcgaggagatcaac-atgctggtgccggtggattatgggccgaacttgttagcaacaga 378
Query: 262 gg 263
||
Sbjct: 379 gg 380
>gb|Z48610.1|Z48610 ATTS4680 Gif-SeedA Arabidopsis thaliana cDNA clone YAY716 5', mRNA
sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 202 ttcgaggagatcaaccatgctgg 224
|||||||||||||||||||||||
Sbjct: 316 ttcgaggagatcaaccatgctgg 338
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 273,415
Number of Sequences: 1013581
Number of extensions: 273415
Number of successful extensions: 19990
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19710
Number of HSP's gapped (non-prelim): 280
length of query: 677
length of database: 908,940,872
effective HSP length: 20
effective length of query: 657
effective length of database: 888,669,252
effective search space: 583855698564
effective search space used: 583855698564
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)