BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV824550.1|AV824550 AV824550 RAFL6 Arabidopsis thaliana ... 74 2e-011
gb|DR750511.1|DR750511 52-L022342-065-009-D07-SeLA MPIZ-ADI... 74 2e-011
gb|AF062896.1|AF062896 Arabidopsis thaliana putative transc... 74 2e-011
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 2e-011
gb|AY063939.1| Arabidopsis thaliana putative transcription ... 74 2e-011
gb|AY096523.1| Arabidopsis thaliana putative transcription ... 74 2e-011
gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 ... 74 2e-011
gb|AY519552.1| Arabidopsis thaliana MYB transcription facto... 74 2e-011
emb|BX816499.1|CNS0ACDN Arabidopsis thaliana Full-length cD... 74 2e-011
ref|NM_100825.3| Arabidopsis thaliana MYB61; DNA binding / ... 74 2e-011
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 74 2e-011
gb|DR750512.1|DR750512 52-L022343-065-009-D07-SeLB MPIZ-ADI... 72 1e-010
gb|DR750842.1|DR750842 36-L022342-065-009-D05-SeLA MPIZ-ADI... 68 1e-009
gb|DR750843.1|DR750843 36-L022343-065-009-D05-SeLB MPIZ-ADI... 68 1e-009
gb|AF062886.1|AF062886 Arabidopsis thaliana putative transc... 68 1e-009
emb|AX651295.1| Sequence 80 from Patent WO03000898 68 1e-009
gb|AY089060.1| Arabidopsis thaliana clone 250386 mRNA, comp... 68 1e-009
gb|AY550304.1| Arabidopsis thaliana MYB transcription facto... 68 1e-009
ref|NM_104552.1| Arabidopsis thaliana DNA binding / transcr... 68 1e-009
emb|BX816478.1|CNS0ABM8 Arabidopsis thaliana Full-length cD... 66 6e-009
gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 ... 58 1e-006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 58 1e-006
gb|DR751142.1|DR751142 21-L022342-065-009-E03-SeLA MPIZ-ADI... 54 2e-005
gb|DR751143.1|DR751143 21-L022343-065-009-E03-SeLB MPIZ-ADI... 54 2e-005
gb|AF062884.1|AF062884 Arabidopsis thaliana putative transc... 54 2e-005
gb|BT000455.1| Arabidopsis thaliana putative transcription ... 54 2e-005
gb|BT002549.1| Arabidopsis thaliana putative transcription ... 54 2e-005
gb|AY519621.1| Arabidopsis thaliana MYB transcription facto... 54 2e-005
ref|NM_121290.2| Arabidopsis thaliana DNA binding / transcr... 54 2e-005
emb|Z95770.1|ATZ95770 Arabidopsis thaliana mRNA for AtMYB46... 46 0.005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.34
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 40 0.34
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.34
gb|AV822040.1|AV822040 AV822040 RAFL4 Arabidopsis thaliana ... 38 1.3
gb|BU634743.1|BU634743 047B07 Infected Arabidopsis Leaf Ara... 38 1.3
gb|AV554197.1|AV554197 AV554197 Arabidopsis thaliana roots ... 38 1.3
gb|DN604595.1|DN604595 JCAt5g10280 Arabidopsis Gateway cDNA... 38 1.3
gb|DN604603.1|DN604603 JCAt3g61250 Arabidopsis Gateway cDNA... 38 1.3
gb|DR749878.1|DR749878 86-L022342-065-009-F11-SeLA MPIZ-ADI... 38 1.3
gb|DR749879.1|DR749879 86-L022343-065-009-F11-SeLB MPIZ-ADI... 38 1.3
gb|DR750727.1|DR750727 43-L021127-065-005-C06-SeLA MPIZ-ADI... 38 1.3
gb|DR751410.1|DR751410 07-L022342-065-009-G01-SeLA MPIZ-ADI... 38 1.3
gb|AF062866.1|AF062866 Arabidopsis thaliana putative transc... 38 1.3
gb|AF062916.1|AF062916 Arabidopsis thaliana putative transc... 38 1.3
gb|AY039554.1| Arabidopsis thaliana AT3g12720/MBK21_8 mRNA,... 38 1.3
gb|AY102155.1| Arabidopsis thaliana AT3g12720/MBK21_8 mRNA,... 38 1.3
gb|BT002877.1| Arabidopsis thaliana clone RAFL14-88-D17 (R2... 38 1.3
gb|BT004402.1| Arabidopsis thaliana clone U20400 putative m... 38 1.3
emb|AL806667.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|AL806676.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX510632.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545925.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545929.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545933.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545947.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545955.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX545959.1| Arabidopsis thaliana transposon insertion S... 38 1.3
emb|BX664592.1| Arabidopsis thaliana transposon insertion S... 38 1.3
gb|AY519601.1| Arabidopsis thaliana MYB transcription facto... 38 1.3
gb|AY519619.1| Arabidopsis thaliana MYB transcription facto... 38 1.3
emb|BX832556.1|CNS09ZV7 Arabidopsis thaliana Full-length cD... 38 1.3
emb|BX823909.1|CNS0A5GO Arabidopsis thaliana Full-length cD... 38 1.3
dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosom... 38 1.3
gb|AY550294.1| Arabidopsis thaliana MYB transcription facto... 38 1.3
gb|BT015573.1| Arabidopsis thaliana At5g10280 mRNA sequence 38 1.3
emb|X90386.1|ATY53GENE A.thaliana DNA for Y53 gene 38 1.3
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 38 1.3
emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome... 38 1.3
ref|NM_112108.1| Arabidopsis thaliana DNA binding / transcr... 38 1.3
ref|NM_121066.2| Arabidopsis thaliana MYB92; DNA binding / ... 38 1.3
ref|NM_115989.3| Arabidopsis thaliana DNA binding / transcr... 38 1.3
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 38 1.3
emb|AL091219.1|CNS00UNP Arabidopsis thaliana genome survey ... 36 5.3
gb|AA605574.1|AA605574 30610 Lambda-PRL2 Arabidopsis thalia... 36 5.3
gb|R89921.1|R89921 16276 Lambda-PRL2 Arabidopsis thaliana c... 36 5.3
gb|AI993253.1|AI993253 701495854 A. thaliana, Ohio State cl... 36 5.3
gb|AU229426.1|AU229426 AU229426 RAFL17 Arabidopsis thaliana... 36 5.3
gb|AV793869.1|AV793869 AV793869 RAFL8 Arabidopsis thaliana ... 36 5.3
gb|CB260931.1|CB260931 50-E9408-012-002-D07-t7r MPIZ-ADIS-0... 36 5.3
gb|BX834287.1|BX834287 BX834287 Arabidopsis thaliana Adult ... 36 5.3
gb|AV546616.1|AV546616 AV546616 Arabidopsis thaliana roots ... 36 5.3
gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana ... 36 5.3
gb|BP623294.1|BP623294 BP623294 RAFL17 Arabidopsis thaliana... 36 5.3
gb|BP562985.2|BP562985 BP562985 RAFL17 Arabidopsis thaliana... 36 5.3
gb|BP778391.1|BP778391 BP778391 RAFL7 Arabidopsis thaliana ... 36 5.3
gb|BP782788.1|BP782788 BP782788 RAFL7 Arabidopsis thaliana ... 36 5.3
gb|BP849632.1|BP849632 BP849632 RAFL21 Arabidopsis thaliana... 36 5.3
gb|BP860828.1|BP860828 BP860828 RAFL21 Arabidopsis thaliana... 36 5.3
gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA... 36 5.3
gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADI... 36 5.3
gb|DR750899.1|DR750899 32-L022342-065-009-H04-SeLA MPIZ-ADI... 36 5.3
gb|AF249309.1|AF249309 Arabidopsis thaliana putative transc... 36 5.3
gb|BT005399.1| Arabidopsis thaliana clone U50311 unknown pr... 36 5.3
gb|AC002396.1| Arabidopsis thaliana chromosome I BAC F3I6 g... 36 5.3
gb|AC010164.2|AC010164 Arabidopsis thaliana chromosome I BA... 36 5.3
gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BA... 36 5.3
gb|AC069326.1|AC069326 Genomic Sequence For Arabidopsis tha... 36 5.3
gb|AY519581.1| Arabidopsis thaliana MYB transcription facto... 36 5.3
emb|BX817749.1|CNS0ABAH Arabidopsis thaliana Full-length cD... 36 5.3
emb|BX816441.1|CNS0ABR1 Arabidopsis thaliana Full-length cD... 36 5.3
dbj|AK117427.1| Arabidopsis thaliana At5g19190 mRNA for unk... 36 5.3
emb|CQ805344.1| Sequence 1755 from Patent WO2004035798 36 5.3
emb|AJ838178.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 5.3
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 36 5.3
ref|NM_121924.2| Arabidopsis thaliana unknown protein AT5G1... 36 5.3
ref|NM_102265.2| Arabidopsis thaliana unknown protein AT1G2... 36 5.3
ref|NM_103088.3| Arabidopsis thaliana nucleic acid binding ... 36 5.3
ref|NM_103090.3| Arabidopsis thaliana unknown protein AT1G3... 36 5.3
ref|NM_001036058.1| Arabidopsis thaliana unknown protein AT... 36 5.3
ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding /... 36 5.3
>gb|AV824550.1|AV824550 AV824550 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-72-D11 5',
mRNA sequence
Length = 605
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 480 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 539
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 540 ccaaacacacacaagcc 556
>gb|DR750511.1|DR750511 52-L022342-065-009-D07-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D07, mRNA sequence
Length = 917
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 380 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 439
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 440 ccaaacacacacaagcc 456
>gb|AF062896.1|AF062896 Arabidopsis thaliana putative transcription factor (MYB61) mRNA,
partial cds
Length = 1031
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 82 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 141
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 142 ccaaacacacacaagcc 158
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 3086717 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 3086776
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 3086777 ccaaacacacacaagcc 3086793
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 12217051 gctgttcctggagcagct 12217034
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21 cgaagaagacctcatcat 38
||||||||||||||||||
Sbjct: 10260000 cgaagaagacctcatcat 10260017
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 345 caagaatcgtgctgaaac 362
||||||||||||||||||
Sbjct: 8565104 caagaatcgtgctgaaac 8565121
>gb|AY063939.1| Arabidopsis thaliana putative transcription factor (At1g09540)
mRNA, complete cds
Length = 1512
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 479 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 538
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 539 ccaaacacacacaagcc 555
>gb|AY096523.1| Arabidopsis thaliana putative transcription factor protein
(At1g09540) mRNA, complete cds
Length = 1132
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 307 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 366
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 367 ccaaacacacacaagcc 383
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains
phyA marker, complete sequence
Length = 95865
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 68498 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 68557
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 68558 ccaaacacacacaagcc 68574
>gb|AY519552.1| Arabidopsis thaliana MYB transcription factor (At1g09540) mRNA,
complete cds
Length = 1101
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 307 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 366
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 367 ccaaacacacacaagcc 383
>emb|BX816499.1|CNS0ACDN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH52ZC11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1452
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 440 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 499
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 500 ccaaacacacacaagcc 516
>ref|NM_100825.3| Arabidopsis thaliana MYB61; DNA binding / transcription factor
AT1G09540 (MYB61) mRNA, complete cds
Length = 1496
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 479 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 538
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 539 ccaaacacacacaagcc 555
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | |||||||||
Sbjct: 3086897 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgac 3086956
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 3086957 ccaaacacacacaagcc 3086973
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 67 tggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatgg 126
||||| |||||||| ||| ||| || ||||| || || || ||||| ||||| | |||
Sbjct: 21320944 tggtcgcaaattgctgcgaggcttcccgggagaaccgacaacgagataaagaacttgtgg 21321003
Query: 127 aactcgtgcatcaagaagaagctgaggcagaaaggcattga 167
|| |||||||| ||||||||||||| | |||||||||||||
Sbjct: 21321004 aattcgtgcattaagaagaagctgatgaagaaaggcattga 21321044
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 12208255 gctgttcctggagcagct 12208238
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21 cgaagaagacctcatcat 38
||||||||||||||||||
Sbjct: 10251205 cgaagaagacctcatcat 10251222
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 345 caagaatcgtgctgaaac 362
||||||||||||||||||
Sbjct: 8565337 caagaatcgtgctgaaac 8565354
>gb|DR750512.1|DR750512 52-L022343-065-009-D07-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D07, mRNA sequence
Length = 890
Score = 71.9 bits (36), Expect = 1e-010
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 110 agatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatc 169
|||||||||||||||||||||| ||||||||||||| |||| || | ||||||||| |
Sbjct: 890 agatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattgacc 831
Query: 170 ccaacacccacaagcc 185
| ||||| ||||||||
Sbjct: 830 caaacacacacaagcc 815
>gb|DR750842.1|DR750842 36-L022342-065-009-D05-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D05, mRNA sequence
Length = 844
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 319 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 378
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 379 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 438
Query: 158 aaggcattga 167
||||||||||
Sbjct: 439 aaggcattga 448
>gb|DR750843.1|DR750843 36-L022343-065-009-D05-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D05, mRNA sequence
Length = 908
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Minus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 801 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 742
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 741 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 682
Query: 158 aaggcattga 167
||||||||||
Sbjct: 681 aaggcattga 672
>gb|AF062886.1|AF062886 Arabidopsis thaliana putative transcription factor (MYB50) mRNA,
partial cds
Length = 858
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 14 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 73
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 74 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 133
Query: 158 aaggcattga 167
||||||||||
Sbjct: 134 aaggcattga 143
>emb|AX651295.1| Sequence 80 from Patent WO03000898
Length = 1737
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 236 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 295
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 296 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 355
Query: 158 aaggcattga 167
||||||||||
Sbjct: 356 aaggcattga 365
>gb|AY089060.1| Arabidopsis thaliana clone 250386 mRNA, complete sequence
Length = 1071
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 257 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 316
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 317 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 376
Query: 158 aaggcattga 167
||||||||||
Sbjct: 377 aaggcattga 386
>gb|AY550304.1| Arabidopsis thaliana MYB transcription factor (At1g57557) mRNA,
complete cds
Length = 945
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 236 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 295
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 296 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 355
Query: 158 aaggcattga 167
||||||||||
Sbjct: 356 aaggcattga 365
>ref|NM_104552.1| Arabidopsis thaliana DNA binding / transcription factor AT1G57560
mRNA, complete cds
Length = 1073
Score = 67.9 bits (34), Expect = 1e-009
Identities = 106/130 (81%)
Strand = Plus / Plus
Query: 38 tcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccaggga 97
||||||| || ||||| || || ||||| ||||| |||||||| ||| ||| || ||||
Sbjct: 259 tcgagcttcatgctgttcttggaaacagatggtcgcaaattgctgcgaggcttcccggga 318
Query: 98 ggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcaga 157
| || || || ||||| ||||| | ||||| |||||||| ||||||||||||| | |||
Sbjct: 319 gaaccgacaacgagataaagaacttgtggaattcgtgcattaagaagaagctgatgaaga 378
Query: 158 aaggcattga 167
||||||||||
Sbjct: 379 aaggcattga 388
>emb|BX816478.1|CNS0ABM8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH50ZF08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1374
Score = 65.9 bits (33), Expect = 6e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
||||||||||||||||||||||| ||||||||||||| |||| || | ||||||| |
Sbjct: 447 gagatcaagaatctatggaactcaagcatcaagaagaaactgaaacaaagaggcattaac 506
Query: 169 cccaacacccacaagcc 185
|| ||||| ||||||||
Sbjct: 507 ccaaacacacacaagcc 523
>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence,
complete sequence
Length = 90448
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 67 tggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatgg 126
||||| |||||||| ||| ||| || ||||| || || || ||||| ||||| | |||
Sbjct: 7922 tggtcgcaaattgctgcgaggcttcccgggagaaccgacaacgagataaagaacttgtgg 7981
Query: 127 aactcgtgcatcaagaagaagctgaggcagaaaggcattga 167
|| |||||||| ||||||||||||| | |||||||||||||
Sbjct: 7982 aattcgtgcattaagaagaagctgatgaagaaaggcattga 8022
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 67 tggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatgg 126
||||| |||||||| ||| ||| || ||||| || || || ||||| ||||| | |||
Sbjct: 5676720 tggtcgcaaattgctgcgaggcttcccgggagaaccgacaacgagataaagaacttgtgg 5676779
Query: 127 aactcgtgcatcaagaagaagctgaggcagaaaggcattga 167
|| |||||||| ||||||||||||| | |||||||||||||
Sbjct: 5676780 aattcgtgcattaagaagaagctgatgaagaaaggcattga 5676820
>gb|DR751142.1|DR751142 21-L022342-065-009-E03-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E03, mRNA sequence
Length = 841
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 353 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 412
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 413 tcaagaatttctggaactc 431
>gb|DR751143.1|DR751143 21-L022343-065-009-E03-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E03, mRNA sequence
Length = 843
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 666 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 607
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 606 tcaagaatttctggaactc 588
>gb|AF062884.1|AF062884 Arabidopsis thaliana putative transcription factor (MYB46) mRNA,
partial cds
Length = 853
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 47 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 106
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 107 tcaagaatttctggaactc 125
>gb|BT000455.1| Arabidopsis thaliana putative transcription factor (MYB46)
(At5g12870) mRNA, complete cds
Length = 1110
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 322 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 381
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 382 tcaagaatttctggaactc 400
>gb|BT002549.1| Arabidopsis thaliana putative transcription factor (MYB46)
(At5g12870) mRNA, complete cds
Length = 917
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 269 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 328
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 329 tcaagaatttctggaactc 347
>gb|AY519621.1| Arabidopsis thaliana MYB transcription factor (At5g12870) mRNA,
complete cds
Length = 843
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 269 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 328
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 329 tcaagaatttctggaactc 347
>ref|NM_121290.2| Arabidopsis thaliana DNA binding / transcription factor AT5G12870
mRNA, complete cds
Length = 1111
Score = 54.0 bits (27), Expect = 2e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| |||||||| | |||| || |||| ||||| ||||
Sbjct: 322 tcctcggcaacaggtggtctcagattgcagcacgattgcctggtcggaccgataacgaga 381
Query: 113 tcaagaatctatggaactc 131
|||||||| | ||||||||
Sbjct: 382 tcaagaatttctggaactc 400
>emb|Z95770.1|ATZ95770 Arabidopsis thaliana mRNA for AtMYB46 R2R3-MYB transcription factor
Length = 135
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagc 83
||||||| |||||||||||||| ||||||||
Sbjct: 89 tcctcggcaacaggtggtctcagattgcagc 119
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.34
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| | |||| || |||| ||||| |||||||||||| |
Sbjct: 3876478 aggtggtctcagattgcagcacgattgcctggtcggaccgataacgagatcaagaatttc 3876419
Query: 124 tggaactc 131
||||||||
Sbjct: 3876418 tggaactc 3876411
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 3046209 ccagggagaacagataacgagatcaagaatttctggaac 3046247
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 6178814 gaagaagacctcatcatc 6178831
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 40.1 bits (20), Expect = 0.34
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| | |||| || |||| ||||| |||||||||||| |
Sbjct: 15319 aggtggtctcagattgcagcacgattgcctggtcggaccgataacgagatcaagaatttc 15260
Query: 124 tggaactc 131
||||||||
Sbjct: 15259 tggaactc 15252
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.34
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| | |||| || |||| ||||| |||||||||||| |
Sbjct: 4063505 aggtggtctcagattgcagcacgattgcctggtcggaccgataacgagatcaagaatttc 4063446
Query: 124 tggaactc 131
||||||||
Sbjct: 4063445 tggaactc 4063438
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 3233241 ccagggagaacagataacgagatcaagaatttctggaac 3233279
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 6457691 gaagaagacctcatcatc 6457708
>gb|AV822040.1|AV822040 AV822040 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-20-E07 5',
mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 416 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 462
>gb|BU634743.1|BU634743 047B07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 502
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 139 aagaagaagctgaggcagaaagg 161
||||||| |||||||||||||||
Sbjct: 329 aagaagacgctgaggcagaaagg 351
>gb|AV554197.1|AV554197 AV554197 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ83h03R 5', mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 86 ccagggagaacagataacgagatcaagaatttctggaac 124
>gb|DN604595.1|DN604595 JCAt5g10280 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 681
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 284 ccagggagaacagataacgagatcaagaatttctggaac 322
>gb|DN604603.1|DN604603 JCAt3g61250 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 248 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 307
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 308 aagaacttatggaac 322
>gb|DR749878.1|DR749878 86-L022342-065-009-F11-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-F11, mRNA sequence
Length = 938
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 338 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 397
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 398 aagaacttatggaac 412
>gb|DR749879.1|DR749879 86-L022343-065-009-F11-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-F11, mRNA sequence
Length = 932
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Minus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 739 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 680
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 679 aagaacttatggaac 665
>gb|DR750727.1|DR750727 43-L021127-065-005-C06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-C06, mRNA sequence
Length = 792
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 416 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 462
>gb|DR751410.1|DR751410 07-L022342-065-009-G01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-G01, mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 373 ccagggagaacagataacgagatcaagaatttctggaac 411
>gb|AF062866.1|AF062866 Arabidopsis thaliana putative transcription factor (MYB17) mRNA,
partial cds
Length = 891
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 28 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 87
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 88 aagaacttatggaac 102
>gb|AF062916.1|AF062916 Arabidopsis thaliana putative transcription factor (MYB92) mRNA,
complete cds
Length = 1493
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 548 ccagggagaacagataacgagatcaagaatttctggaac 586
>gb|AY039554.1| Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds
Length = 1109
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 415 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 461
>gb|AY102155.1| Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds
Length = 924
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 328 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 374
>gb|BT002877.1| Arabidopsis thaliana clone RAFL14-88-D17 (R20400) putative myb
family transcription factor (At5g10280) mRNA, complete
cds
Length = 1397
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 411 ccagggagaacagataacgagatcaagaatttctggaac 449
>gb|BT004402.1| Arabidopsis thaliana clone U20400 putative myb family transcription
factor (At5g10280) mRNA, complete cds
Length = 1036
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 289 ccagggagaacagataacgagatcaagaatttctggaac 327
>emb|AL806667.1| Arabidopsis thaliana transposon insertion STS SM_3.19957, sequence
tagged site
Length = 445
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|AL806676.1| Arabidopsis thaliana transposon insertion STS SM_3.19958, sequence
tagged site
Length = 445
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX510632.1| Arabidopsis thaliana transposon insertion STS SM_3.39891, sequence
tagged site
Length = 266
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545925.1| Arabidopsis thaliana transposon insertion STS SM_3.39889, sequence
tagged site
Length = 182
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545929.1| Arabidopsis thaliana transposon insertion STS SM_3.39872, sequence
tagged site
Length = 191
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545933.1| Arabidopsis thaliana transposon insertion STS SM_3.39883, sequence
tagged site
Length = 360
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545947.1| Arabidopsis thaliana transposon insertion STS SM_3.39886, sequence
tagged site
Length = 474
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545955.1| Arabidopsis thaliana transposon insertion STS SM_3.39878, sequence
tagged site
Length = 355
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX545959.1| Arabidopsis thaliana transposon insertion STS SM_3.39879, sequence
tagged site
Length = 465
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>emb|BX664592.1| Arabidopsis thaliana transposon insertion STS SM_3.39887, sequence
tagged site
Length = 371
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 20 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 66
>gb|AY519601.1| Arabidopsis thaliana MYB transcription factor (At3g61250) mRNA,
complete cds
Length = 900
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 253 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 312
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 313 aagaacttatggaac 327
>gb|AY519619.1| Arabidopsis thaliana MYB transcription factor (At5g10280) mRNA,
complete cds
Length = 1005
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 289 ccagggagaacagataacgagatcaagaatttctggaac 327
>emb|BX832556.1|CNS09ZV7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZH10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1341
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 398 ccagggagaacagataacgagatcaagaatttctggaac 436
>emb|BX823909.1|CNS0A5GO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZH05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1300
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 557 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 616
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 617 aagaacttatggaac 631
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
Length = 79125
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 28915 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 28869
>gb|AY550294.1| Arabidopsis thaliana MYB transcription factor (At3g12720) mRNA,
complete cds
Length = 924
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 328 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 374
>gb|BT015573.1| Arabidopsis thaliana At5g10280 mRNA sequence
Length = 992
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 276 ccagggagaacagataacgagatcaagaatttctggaac 314
>emb|X90386.1|ATY53GENE A.thaliana DNA for Y53 gene
Length = 1866
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 56 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 102
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 4039912 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 4039866
Score = 36.2 bits (18), Expect = 5.3
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| ||||| ||||| || || || || ||||||||||| ||||||||
Sbjct: 22630199 attgcagcacagcttccaggaagaacagacaacgagatcaagaacttatggaac 22630252
>emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18D22 (ESSA project)
Length = 57180
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 38035 ccagggagaacagataacgagatcaagaatttctggaac 38073
>ref|NM_112108.1| Arabidopsis thaliana DNA binding / transcription factor AT3G12720
mRNA, complete cds
Length = 1108
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 415 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 461
>ref|NM_121066.2| Arabidopsis thaliana MYB92; DNA binding / transcription factor
AT5G10280 (MYB92) mRNA, complete cds
Length = 1466
Score = 38.2 bits (19), Expect = 1.3
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| || ||||| |||||||||||| | ||||||
Sbjct: 496 ccagggagaacagataacgagatcaagaatttctggaac 534
>ref|NM_115989.3| Arabidopsis thaliana DNA binding / transcription factor AT3G61250
mRNA, complete cds
Length = 1391
Score = 38.2 bits (19), Expect = 1.3
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||| || |||||||| ||||| ||||| || || || || ||||||
Sbjct: 557 ctcggcaacaggtgggctgctattgcagcacagcttccaggaagaacagacaacgagatc 616
Query: 115 aagaatctatggaac 129
||||| ||||||||
Sbjct: 617 aagaacttatggaac 631
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 38.2 bits (19), Expect = 1.3
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 100 actgataatgagatcaagaatctatggaactcgtgcatcaagaagaa 146
||||||||||| ||||||| | |||||||| ||||| ||||||||
Sbjct: 4044010 actgataatgaagtcaagaacttttggaactcatgcattaagaagaa 4043964
Score = 36.2 bits (18), Expect = 5.3
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| ||||| ||||| || || || || ||||||||||| ||||||||
Sbjct: 22682900 attgcagcacagcttccaggaagaacagacaacgagatcaagaacttatggaac 22682953
>emb|AL091219.1|CNS00UNP Arabidopsis thaliana genome survey sequence T7 end of BAC T7H4 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 36.2 bits (18), Expect = 5.3
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| ||||| ||||| || || || || ||||||||||| ||||||||
Sbjct: 267 attgcagcacagcttccaggaagaacagacaacgagatcaagaacttatggaac 320
>gb|AA605574.1|AA605574 30610 Lambda-PRL2 Arabidopsis thaliana cDNA clone 205L7XP 3', mRNA
sequence
Length = 474
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 162 gctgttcctggagcagct 145
>gb|R89921.1|R89921 16276 Lambda-PRL2 Arabidopsis thaliana cDNA clone 186F13T7, mRNA
sequence
Length = 580
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 233 gaagaagacctcatcatc 250
>gb|AI993253.1|AI993253 701495854 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495854, mRNA sequence
Length = 359
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 309 gaagaagacctcatcatc 326
>gb|AU229426.1|AU229426 AU229426 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-03-G23 3',
mRNA sequence
Length = 367
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 343 gaagaagacctcatcatc 326
>gb|AV793869.1|AV793869 AV793869 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-10-J05 3',
mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 5.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 459 ccaaactctctatttccctttc 480
||||||||||| ||||||||||
Sbjct: 391 ccaaactctctctttccctttc 412
>gb|CB260931.1|CB260931 50-E9408-012-002-D07-t7r MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769D072Q 5-PRIME, mRNA sequence
Length = 675
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 639 gctgttcctggagcagct 622
>gb|BX834287.1|BX834287 BX834287 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS15ZG03 3PRIM, mRNA
sequence
Length = 809
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 269 gctgttcctggagcagct 286
>gb|AV546616.1|AV546616 AV546616 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL16h01F 3', mRNA sequence
Length = 412
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 293 gctgttcctggagcagct 310
>gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C05214
5-PRIME, mRNA sequence
Length = 784
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 348 cacgctctcctcggaaacaggtggtc 373
>gb|BP623294.1|BP623294 BP623294 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-06-E09 3',
mRNA sequence
Length = 366
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 307 gctgttcctggagcagct 324
>gb|BP562985.2|BP562985 BP562985 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-03-G23 5',
mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 324 gaagaagacctcatcatc 341
>gb|BP778391.1|BP778391 BP778391 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-27-F23 3',
mRNA sequence
Length = 396
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 327 gctgttcctggagcagct 344
>gb|BP782788.1|BP782788 BP782788 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-83-I19 3',
mRNA sequence
Length = 412
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 326 gctgttcctggagcagct 343
>gb|BP849632.1|BP849632 BP849632 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-09-P19 5',
mRNA sequence
Length = 386
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 323 gaagaagacctcatcatc 340
>gb|BP860828.1|BP860828 BP860828 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-45-G19 5',
mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 346 gaagaagacctcatcatc 363
>gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 637
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 239 cacgctctcctcggaaacaggtggtc 264
>gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E06, mRNA sequence
Length = 879
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 316 cacgctctcctcggaaacaggtggtc 341
>gb|DR750899.1|DR750899 32-L022342-065-009-H04-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-H04, mRNA sequence
Length = 369
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 328 cacgctctcctcggaaacaggtggtc 353
>gb|AF249309.1|AF249309 Arabidopsis thaliana putative transcription factor (MYB106) mRNA,
complete cds
Length = 1038
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 244 cacgctctcctcggaaacaggtggtc 269
>gb|BT005399.1| Arabidopsis thaliana clone U50311 unknown protein (At5g19190) mRNA,
complete cds
Length = 496
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 236 gaagaagacctcatcatc 253
>gb|AC002396.1| Arabidopsis thaliana chromosome I BAC F3I6 genomic sequence, complete
sequence
Length = 122358
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 345 caagaatcgtgctgaaac 362
||||||||||||||||||
Sbjct: 44660 caagaatcgtgctgaaac 44677
>gb|AC010164.2|AC010164 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete
sequence
Length = 103443
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 88704 gctgttcctggagcagct 88721
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete
sequence
Length = 154716
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 21 cgaagaagacctcatcat 38
||||||||||||||||||
Sbjct: 12171 cgaagaagacctcatcat 12154
>gb|AC069326.1|AC069326 Genomic Sequence For Arabidopsis thaliana Clone T24G5 From Chromosome
V, complete sequence
Length = 86358
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 49286 gaagaagacctcatcatc 49303
>gb|AY519581.1| Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA,
complete cds
Length = 1038
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 244 cacgctctcctcggaaacaggtggtc 269
>emb|BX817749.1|CNS0ABAH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL3ZB04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 931
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 693 gctgttcctggagcagct 676
>emb|BX816441.1|CNS0ABR1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH48ZE12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 787
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 477 gctgttcctggagcagct 460
>dbj|AK117427.1| Arabidopsis thaliana At5g19190 mRNA for unknown protein, complete
cds, clone: RAFL17-03-G23
Length = 661
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 319 gaagaagacctcatcatc 336
>emb|CQ805344.1| Sequence 1755 from Patent WO2004035798
Length = 465
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 236 gaagaagacctcatcatc 253
>emb|AJ838178.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
346H08
Length = 305
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 280 gctgttcctggagcagct 263
>emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3, BAC clone T20K12
Length = 109155
Score = 36.2 bits (18), Expect = 5.3
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 129
|||||||| ||||| ||||| || || || || ||||||||||| ||||||||
Sbjct: 60060 attgcagcacagcttccaggaagaacagacaacgagatcaagaacttatggaac 60113
>ref|NM_121924.2| Arabidopsis thaliana unknown protein AT5G19190 mRNA, complete cds
Length = 661
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 319 gaagaagacctcatcatc 336
>ref|NM_102265.2| Arabidopsis thaliana unknown protein AT1G24190 mRNA, complete cds
Length = 4362
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 345 caagaatcgtgctgaaac 362
||||||||||||||||||
Sbjct: 3138 caagaatcgtgctgaaac 3121
>ref|NM_103088.3| Arabidopsis thaliana nucleic acid binding AT1G33680 mRNA, complete
cds
Length = 3217
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 2384 gctgttcctggagcagct 2367
>ref|NM_103090.3| Arabidopsis thaliana unknown protein AT1G33700 transcript variant
AT1G33700.1 mRNA, complete cds
Length = 4556
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 3509 gctgttcctggagcagct 3526
>ref|NM_001036058.1| Arabidopsis thaliana unknown protein AT1G33700 transcript variant
AT1G33700.2 mRNA, complete cds
Length = 4562
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 399 gctgttcctggagcagct 416
||||||||||||||||||
Sbjct: 3515 gctgttcctggagcagct 3532
>ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding / transcription factor
AT3G01140 (MYB106) mRNA, complete cds
Length = 1543
Score = 36.2 bits (18), Expect = 5.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 46 cacgctgtcctcgggaacaggtggtc 71
|||||| ||||||| |||||||||||
Sbjct: 526 cacgctctcctcggaaacaggtggtc 551
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 235,143
Number of Sequences: 1013581
Number of extensions: 235143
Number of successful extensions: 19862
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18323
Number of HSP's gapped (non-prelim): 1529
length of query: 480
length of database: 908,940,872
effective HSP length: 20
effective length of query: 460
effective length of database: 888,669,252
effective search space: 408787855920
effective search space used: 408787855920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)