BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana ... 48 0.002
gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-... 48 0.002
gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveg... 48 0.002
gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveg... 48 0.002
gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots ... 48 0.002
gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana ... 48 0.002
gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloarteno... 48 0.002
gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltrans... 48 0.002
gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, ... 48 0.002
gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltrans... 48 0.002
emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cD... 48 0.002
emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cD... 48 0.002
emb|CQ804624.1| Sequence 1035 from Patent WO2004035798 48 0.002
gb|AF195648.1| Arabidopsis thaliana sterol methyltransferas... 48 0.002
ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTR... 48 0.002
dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.026
gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence 44 0.026
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.026
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.026
>gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 5',
mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 355 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 414
>gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767K2117Q 5-PRIME, mRNA sequence
Length = 547
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 275 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 334
>gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ10c01R 5', mRNA
sequence
Length = 553
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 355 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 414
>gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ17h10R 5', mRNA
sequence
Length = 491
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 355 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 414
>gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ152g09F 3', mRNA sequence
Length = 603
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 327 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 386
>gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11201
5-PRIME, mRNA sequence
Length = 831
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 342 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 401
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1)
mRNA, complete cds
Length = 1269
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 331 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 390
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1245
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 356 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 415
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds
Length = 1080
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 358 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 417
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710)
mRNA, complete cds
Length = 1108
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 289 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 348
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS13ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1283
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 340 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 399
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1198
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 315 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 374
>emb|CQ804624.1| Sequence 1035 from Patent WO2004035798
Length = 1011
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 289 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 348
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA,
complete cds
Length = 1257
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 342 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 401
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710
(SMT1) mRNA, complete cds
Length = 1462
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 300 aaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| ||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 387 aaggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 446
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
Length = 79259
Score = 44.1 bits (22), Expect = 0.026
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||| || |||||||||||||| ||||| || | |||||||| ||||||||
Sbjct: 68761 aggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcag 68704
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence
Length = 1008
Score = 44.1 bits (22), Expect = 0.026
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 306 ctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcagc 359
||||| || |||||||||||||| ||||| || | |||||||| |||||||||
Sbjct: 292 ctggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcagc 345
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.026
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||| || |||||||||||||| ||||| || | |||||||| ||||||||
Sbjct: 4238531 aggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcag 4238474
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.026
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||| || |||||||||||||| ||||| || | |||||||| ||||||||
Sbjct: 4425558 aggtactggatgtaggatgtggaattggtggaccgttgagggaaattgcaagattcag 4425501
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,085
Number of Sequences: 1013581
Number of extensions: 208085
Number of successful extensions: 13707
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13505
Number of HSP's gapped (non-prelim): 202
length of query: 581
length of database: 908,940,872
effective HSP length: 20
effective length of query: 561
effective length of database: 888,669,252
effective search space: 498543450372
effective search space used: 498543450372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)