BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL936318.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.26
gb|AV801249.1|AV801249 AV801249 RAFL9 Arabidopsis thaliana ... 40 0.26
gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green ... 40 0.26
gb|BP566762.1|BP566762 BP566762 RAFL14 Arabidopsis thaliana... 40 0.26
gb|BP582076.1|BP582076 BP582076 RAFL14 Arabidopsis thaliana... 40 0.26
gb|BP584937.1|BP584937 BP584937 RAFL14 Arabidopsis thaliana... 40 0.26
gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mR... 40 0.26
gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol met... 40 0.26
gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, compl... 40 0.26
emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cD... 40 0.26
emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cD... 40 0.26
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 40 0.26
gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase... 40 0.26
emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome... 40 0.26
emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosom... 40 0.26
ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA... 40 0.26
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.26
>emb|AL936318.1| Arabidopsis thaliana T-DNA flanking sequence GK-047G05-016081,
genomic survey sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 627 gtgttcacgtactgtgatta 608
>gb|AV801249.1|AV801249 AV801249 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-27-G17 3',
mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 369 gtgttcacgtactgtgatta 350
>gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ061h02F 3', mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 462 gtgttcacgtactgtgatta 443
>gb|BP566762.1|BP566762 BP566762 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-55-D19 3',
mRNA sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 405 gtgttcacgtactgtgatta 386
>gb|BP582076.1|BP582076 BP582076 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-34-L17 3',
mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 405 gtgttcacgtactgtgatta 386
>gb|BP584937.1|BP584937 BP584937 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-48-H14 3',
mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 404 gtgttcacgtactgtgatta 385
>gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mRNA, complete cds
Length = 1315
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 915 gtgttcacgtactgtgatta 934
>gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol methyl oxidase
(At4g12110/F16J13_180) mRNA, complete cds
Length = 897
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 769 gtgttcacgtactgtgatta 788
>gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, complete sequence
Length = 1441
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 916 gtgttcacgtactgtgatta 935
>emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS95ZE04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1013
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 836 gtgttcacgtactgtgatta 855
>emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1317
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 888 gtgttcacgtactgtgatta 907
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 3168407 gtgttcacgtactgtgatta 3168426
>gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase mRNA, complete cds
Length = 1469
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 882 gtgttcacgtactgtgatta 901
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project)
Length = 107600
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 88993 gtgttcacgtactgtgatta 89012
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
Length = 190026
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 112823 gtgttcacgtactgtgatta 112842
>ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1);
catalytic AT4G12110 (SMO1-1) mRNA, complete cds
Length = 1441
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 917 gtgttcacgtactgtgatta 936
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgatta 48
||||||||||||||||||||
Sbjct: 7255669 gtgttcacgtactgtgatta 7255688
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,481
Number of Sequences: 1013581
Number of extensions: 151481
Number of successful extensions: 9462
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9318
Number of HSP's gapped (non-prelim): 144
length of query: 369
length of database: 908,940,872
effective HSP length: 19
effective length of query: 350
effective length of database: 889,682,833
effective search space: 311388991550
effective search space used: 311388991550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)