BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV829171.1|AV829171 AV829171 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|CD530307.1|CD530307 05K01 Arabidopsis Leaf Senescence Li... 42 0.12
gb|AY065225.1| Arabidopsis thaliana unknown protein (At2g01... 42 0.12
gb|AY096550.1| Arabidopsis thaliana unknown protein (At2g01... 42 0.12
emb|AX506466.1| Sequence 1161 from Patent WO0216655 42 0.12
gb|AY380334.1| Arabidopsis thaliana basic pentacysteine 1 (... 42 0.12
gb|AC007265.5| Arabidopsis thaliana chromosome 2 clone F23I... 42 0.12
emb|BX825054.1|CNS0A7VD Arabidopsis thaliana Full-length cD... 42 0.12
emb|CR378423.1| Arabidopsis thaliana transposon insertion S... 42 0.12
emb|CR378430.1| Arabidopsis thaliana transposon insertion S... 42 0.12
emb|CR384662.1| Arabidopsis thaliana transposon insertion S... 42 0.12
ref|NM_126254.1| Arabidopsis thaliana unknown protein AT2G0... 42 0.12
ref|NM_201669.1| Arabidopsis thaliana unknown protein AT2G0... 42 0.12
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.12
emb|BX820643.1|CNS0AACB Arabidopsis thaliana Full-length cD... 40 0.47
>gb|AV829171.1|AV829171 AV829171 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-40-G10 5',
mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 593 cgctgctgctgctgctgaaca 573
>gb|CD530307.1|CD530307 05K01 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 224 cgctgctgctgctgctgaaca 204
>gb|AY065225.1| Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds
Length = 1060
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 596 cgctgctgctgctgctgaaca 576
>gb|AY096550.1| Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds
Length = 883
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 503 cgctgctgctgctgctgaaca 483
>emb|AX506466.1| Sequence 1161 from Patent WO0216655
Length = 852
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 503 cgctgctgctgctgctgaaca 483
>gb|AY380334.1| Arabidopsis thaliana basic pentacysteine 1 (BPC1) mRNA, complete
cds
Length = 896
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 503 cgctgctgctgctgctgaaca 483
>gb|AC007265.5| Arabidopsis thaliana chromosome 2 clone F23I14 map CIC11A04, complete
sequence
Length = 9638
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 3285 cgctgctgctgctgctgaaca 3305
>emb|BX825054.1|CNS0A7VD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH91ZH05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1459
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctgaac 318
|||||||||||||||||||||
Sbjct: 599 tcgctgctgctgctgctgaac 579
>emb|CR378423.1| Arabidopsis thaliana transposon insertion STS GT_5.59100, sequence
tagged site
Length = 204
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 90 cgctgctgctgctgctgaaca 70
>emb|CR378430.1| Arabidopsis thaliana transposon insertion STS GT_5.59191, sequence
tagged site
Length = 314
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 90 cgctgctgctgctgctgaaca 70
>emb|CR384662.1| Arabidopsis thaliana transposon insertion STS GT_5.58602, sequence
tagged site
Length = 158
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 89 cgctgctgctgctgctgaaca 69
>ref|NM_126254.1| Arabidopsis thaliana unknown protein AT2G01930 transcript variant
AT2G01930.1 mRNA, complete cds
Length = 1195
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 609 cgctgctgctgctgctgaaca 589
>ref|NM_201669.1| Arabidopsis thaliana unknown protein AT2G01930 transcript variant
AT2G01930.2 mRNA, complete cds
Length = 1567
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 977 cgctgctgctgctgctgaaca 957
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 299 cgctgctgctgctgctgaaca 319
|||||||||||||||||||||
Sbjct: 427706 cgctgctgctgctgctgaaca 427726
>emb|BX820643.1|CNS0AACB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH55ZF04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1384
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 296 catcgctgctgctgctgctg 315
||||||||||||||||||||
Sbjct: 1206 catcgctgctgctgctgctg 1225
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 223,273
Number of Sequences: 1013581
Number of extensions: 223273
Number of successful extensions: 22739
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22630
Number of HSP's gapped (non-prelim): 77
length of query: 657
length of database: 908,940,872
effective HSP length: 20
effective length of query: 637
effective length of database: 888,669,252
effective search space: 566082313524
effective search space used: 566082313524
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)