BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 40 0.35
gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence 40 0.35
gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis th... 40 0.35
ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G... 40 0.35
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.35
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 40.1 bits (20), Expect = 0.35
Identities = 54/67 (80%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||| ||| ||| ||||||||||||| ||||||||||||| || || ||||| ||
Sbjct: 283131 gatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaact 283190
Query: 265 cttcaag 271
|||||||
Sbjct: 283191 cttcaag 283197
>gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence
Length = 3229
Score = 40.1 bits (20), Expect = 0.35
Identities = 54/67 (80%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||| ||| ||| ||||||||||||| ||||||||||||| || || ||||| ||
Sbjct: 2587 gatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaact 2646
Query: 265 cttcaag 271
|||||||
Sbjct: 2647 cttcaag 2653
>gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 76175
Score = 40.1 bits (20), Expect = 0.35
Identities = 54/67 (80%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||| ||| ||| ||||||||||||| ||||||||||||| || || ||||| ||
Sbjct: 54307 gatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaact 54366
Query: 265 cttcaag 271
|||||||
Sbjct: 54367 cttcaag 54373
>ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G01780 mRNA, complete cds
Length = 765
Score = 40.1 bits (20), Expect = 0.35
Identities = 54/67 (80%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||| ||| ||| ||||||||||||| ||||||||||||| || || ||||| ||
Sbjct: 282 gatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaact 341
Query: 265 cttcaag 271
|||||||
Sbjct: 342 cttcaag 348
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.35
Identities = 54/67 (80%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||| ||| ||| ||||||||||||| ||||||||||||| || || ||||| ||
Sbjct: 283131 gatgagcaactattcctccatggacggagttttgtactgcaagactcattttgagcaact 283190
Query: 265 cttcaag 271
|||||||
Sbjct: 283191 cttcaag 283197
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,910
Number of Sequences: 1013581
Number of extensions: 77910
Number of successful extensions: 4687
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4653
Number of HSP's gapped (non-prelim): 36
length of query: 494
length of database: 908,940,872
effective HSP length: 20
effective length of query: 474
effective length of database: 888,669,252
effective search space: 421229225448
effective search space used: 421229225448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)