BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBH4g04.xg.3.1
(1549 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV539181.1|AV539181 AV539181 Arabidopsis thaliana roots ... 50 0.001
gb|AV539583.1|AV539583 AV539583 Arabidopsis thaliana roots ... 50 0.001
gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4 44 0.072
emb|BX828089.1|CNS0A3SN Arabidopsis thaliana Full-length cD... 44 0.072
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.072
emb|AL049488.1|ATF24G24 Arabidopsis thaliana DNA chromosome... 44 0.072
emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosom... 44 0.072
emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosom... 44 0.072
ref|NM_117094.1| Arabidopsis thaliana kinase/ ribokinase AT... 44 0.072
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.072
gb|B09317.1|B09317 F10F20-Sp6 IGF Arabidopsis thaliana geno... 42 0.28
gb|AQ958106.1|AQ958106 LERAU96TF LERA Arabidopsis thaliana ... 42 0.28
gb|BH752164.1|BH752164 SALK_012607.51.65.x Arabidopsis thal... 42 0.28
gb|BZ292019.1|BZ292019 SALK_122966.44.45.x Arabidopsis thal... 42 0.28
gb|CL478638.1|CL478638 SAIL_293_G10.v1 SAIL Collection Arab... 42 0.28
gb|N65093.1|N65093 20133 Lambda-PRL2 Arabidopsis thaliana c... 42 0.28
gb|T42020.1|T42020 5283 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.28
gb|T43694.1|T43694 6957 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.28
gb|R84098.1|R84098 16057 Lambda-PRL2 Arabidopsis thaliana c... 42 0.28
gb|AI994195.1|AI994195 701500174 A. thaliana, Ohio State cl... 42 0.28
gb|AI994865.1|AI994865 701500175 A. thaliana, Ohio State cl... 42 0.28
gb|AV821770.1|AV821770 AV821770 RAFL4 Arabidopsis thaliana ... 42 0.28
gb|AV825099.1|AV825099 AV825099 RAFL6 Arabidopsis thaliana ... 42 0.28
gb|BX839465.1|BX839465 BX839465 Arabidopsis thaliana Adult ... 42 0.28
gb|AV550844.1|AV550844 AV550844 Arabidopsis thaliana roots ... 42 0.28
gb|AV552483.1|AV552483 AV552483 Arabidopsis thaliana roots ... 42 0.28
gb|BP562695.2|BP562695 BP562695 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP562780.2|BP562780 BP562780 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP797457.1|BP797457 BP797457 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP797667.1|BP797667 BP797667 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP798244.1|BP798244 BP798244 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP798331.1|BP798331 BP798331 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP798648.1|BP798648 BP798648 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP799912.1|BP799912 BP799912 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP800416.1|BP800416 BP800416 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP800632.1|BP800632 BP800632 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP801586.1|BP801586 BP801586 RAFL14 Arabidopsis thaliana... 42 0.28
gb|BP804223.1|BP804223 BP804223 RAFL16 Arabidopsis thaliana... 42 0.28
gb|BP819114.1|BP819114 BP819114 RAFL19 Arabidopsis thaliana... 42 0.28
gb|BP825484.1|BP825484 BP825484 RAFL19 Arabidopsis thaliana... 42 0.28
gb|BP830605.1|BP830605 BP830605 RAFL19 Arabidopsis thaliana... 42 0.28
gb|BP841225.1|BP841225 BP841225 RAFL19 Arabidopsis thaliana... 42 0.28
gb|BP846818.1|BP846818 BP846818 RAFL21 Arabidopsis thaliana... 42 0.28
gb|BP847724.1|BP847724 BP847724 RAFL21 Arabidopsis thaliana... 42 0.28
gb|BP853917.1|BP853917 BP853917 RAFL21 Arabidopsis thaliana... 42 0.28
gb|BP867620.1|BP867620 BP867620 RAFL21 Arabidopsis thaliana... 42 0.28
gb|BP868813.1|BP868813 BP868813 RAFL21 Arabidopsis thaliana... 42 0.28
gb|AC024227.3|AC024227 Arabidopsis thaliana chromosome I cl... 42 0.28
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.28
gb|AF387001.1|AF387001 Arabidopsis thaliana putative fructo... 42 0.28
gb|AY128713.1| Arabidopsis thaliana putative fructokinase (... 42 0.28
gb|AY074365.1| Arabidopsis thaliana putative fructokinase (... 42 0.28
gb|AY091312.1| Arabidopsis thaliana putative fructokinase (... 42 0.28
emb|AX651347.1| Sequence 135 from Patent WO03000898 42 0.28
gb|AY085748.1| Arabidopsis thaliana clone 17664 mRNA, compl... 42 0.28
gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsi... 42 0.28
gb|AC007169.8| Arabidopsis thaliana chromosome 2 clone T28P... 42 0.28
emb|BX821938.1|CNS0A96O Arabidopsis thaliana Full-length cD... 42 0.28
emb|BX819246.1|CNS0A9XK Arabidopsis thaliana Full-length cD... 42 0.28
gb|DQ056446.1| Arabidopsis thaliana pfkB-type carbohydrate ... 42 0.28
dbj|AK221807.1| Arabidopsis thaliana mRNA for hypothetical ... 42 0.28
ref|NM_100482.1| Arabidopsis thaliana kinase/ ribokinase AT... 42 0.28
ref|NM_128696.2| Arabidopsis thaliana kinase/ ribokinase AT... 42 0.28
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.28
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.28
>gb|AV539181.1|AV539181 AV539181 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ128f11F 3', mRNA sequence
Length = 475
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||||||||||||
Sbjct: 38 ttcggcgagatgctaatcgacttcgtccc 66
>gb|AV539583.1|AV539583 AV539583 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ135f11F 3', mRNA sequence
Length = 477
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||||||||||||
Sbjct: 42 ttcggcgagatgctaatcgacttcgtccc 70
>gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4
Length = 83922
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 28995 gagtttatgttttacaggaaccctagtgcggacatgct 29032
>emb|BX828089.1|CNS0A3SN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH50ZH03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1873
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 1137 gagtttatgttttacaggaaccctagtgcggacatgct 1174
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 2285112 gagtttatgttttacaggaaccctagtgcggacatgct 2285075
>emb|AL049488.1|ATF24G24 Arabidopsis thaliana DNA chromosome 4, BAC clone F24G24 (ESSA project)
Length = 99856
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 17946 gagtttatgttttacaggaaccctagtgcggacatgct 17909
>emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 28
Length = 198005
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 197619 gagtttatgttttacaggaaccctagtgcggacatgct 197582
>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
Length = 199861
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 4614 gagtttatgttttacaggaaccctagtgcggacatgct 4577
>ref|NM_117094.1| Arabidopsis thaliana kinase/ ribokinase AT4G10260 mRNA, complete
cds
Length = 975
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 313 gagtttatgttttacaggaaccctagtgcggacatgct 350
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.072
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 458 gagttcatgttctacaggaacccgagcgcggacatgct 495
||||| ||||| ||||||||||| || |||||||||||
Sbjct: 6372380 gagtttatgttttacaggaaccctagtgcggacatgct 6372343
>gb|B09317.1|B09317 F10F20-Sp6 IGF Arabidopsis thaliana genomic clone F10F20, DNA
sequence
Length = 1237
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| || |||||||||||
Sbjct: 525 ttcggcgagatgctcattgacttcgtccc 553
>gb|AQ958106.1|AQ958106 LERAU96TF LERA Arabidopsis thaliana genomic clone LERAU96, DNA
sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 538 ttcggcgagatgctaatcgatttcgtccc 510
>gb|BH752164.1|BH752164 SALK_012607.51.65.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_012607.51.65.x,
DNA sequence
Length = 447
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1154 cccccgccgccccgcccctcg 1174
|||||||||||||||||||||
Sbjct: 221 cccccgccgccccgcccctcg 201
>gb|BZ292019.1|BZ292019 SALK_122966.44.45.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_122966.44.45.x,
DNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| || |||||||||||
Sbjct: 38 ttcggcgagatgctcattgacttcgtccc 66
>gb|CL478638.1|CL478638 SAIL_293_G10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_293_G10.v1, DNA sequence
Length = 995
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1154 cccccgccgccccgcccctcg 1174
|||||||||||||||||||||
Sbjct: 829 cccccgccgccccgcccctcg 849
>gb|N65093.1|N65093 20133 Lambda-PRL2 Arabidopsis thaliana cDNA clone 226P16T7, mRNA
sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 90 ttcggcgagatgctaatcgatttcgtccc 118
>gb|T42020.1|T42020 5283 Lambda-PRL2 Arabidopsis thaliana cDNA clone 110B23T7, mRNA
sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 113 ttcggcgagatgctaatcgatttcgtccc 141
>gb|T43694.1|T43694 6957 Lambda-PRL2 Arabidopsis thaliana cDNA clone 122J17T7, mRNA
sequence
Length = 463
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 98 ttcggcgagatgctaatcgatttcgtccc 126
>gb|R84098.1|R84098 16057 Lambda-PRL2 Arabidopsis thaliana cDNA clone 146I12T7, mRNA
sequence
Length = 269
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 90 ttcggcgagatgctaatcgatttcgtccc 118
>gb|AI994195.1|AI994195 701500174 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701500174, mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 90 ttcggcgagatgctaatcgatttcgtccc 118
>gb|AI994865.1|AI994865 701500175 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701500175, mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 90 ttcggcgagatgctaatcgatttcgtccc 118
>gb|AV821770.1|AV821770 AV821770 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-C20 5',
mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 127 ttcggcgagatgctaatcgatttcgtccc 155
>gb|AV825099.1|AV825099 AV825099 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-G11 5',
mRNA sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 126 ttcggcgagatgctaatcgatttcgtccc 154
>gb|BX839465.1|BX839465 BX839465 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS91ZG09 5PRIM, mRNA
sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 97 ttcggcgagatgctaatcgatttcgtccc 125
>gb|AV550844.1|AV550844 AV550844 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ118b09R 5', mRNA sequence
Length = 552
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 53 ttcggcgagatgctaatcgatttcgtccc 81
>gb|AV552483.1|AV552483 AV552483 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ30h02R 5', mRNA sequence
Length = 256
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 35 ttcggcgagatgctaatcgatttcgtccc 63
>gb|BP562695.2|BP562695 BP562695 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-14-L14 5',
mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 130 ttcggcgagatgctaatcgatttcgtccc 158
>gb|BP562780.2|BP562780 BP562780 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-73-E08 5',
mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 130 ttcggcgagatgctaatcgatttcgtccc 158
>gb|BP797457.1|BP797457 BP797457 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-03-H09 5',
mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP797667.1|BP797667 BP797667 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-E01 5',
mRNA sequence
Length = 372
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP798244.1|BP798244 BP798244 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-I11 5',
mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP798331.1|BP798331 BP798331 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-O03 5',
mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP798648.1|BP798648 BP798648 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-07-P21 5',
mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 122 ttcggcgagatgctaatcgatttcgtccc 150
>gb|BP799912.1|BP799912 BP799912 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-12-P11 5',
mRNA sequence
Length = 421
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP800416.1|BP800416 BP800416 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-15-E08 5',
mRNA sequence
Length = 368
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 121 ttcggcgagatgctaatcgatttcgtccc 149
>gb|BP800632.1|BP800632 BP800632 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-16-C23 5',
mRNA sequence
Length = 378
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 123 ttcggcgagatgctaatcgatttcgtccc 151
>gb|BP801586.1|BP801586 BP801586 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-20-I10 5',
mRNA sequence
Length = 349
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP804223.1|BP804223 BP804223 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-01-A13 5',
mRNA sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 125 ttcggcgagatgctaatcgatttcgtccc 153
>gb|BP819114.1|BP819114 BP819114 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-50-E10 5',
mRNA sequence
Length = 410
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 87 ttcggcgagatgctaatcgatttcgtccc 115
>gb|BP825484.1|BP825484 BP825484 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-68-L24 5',
mRNA sequence
Length = 374
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 126 ttcggcgagatgctaatcgatttcgtccc 154
>gb|BP830605.1|BP830605 BP830605 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-85-O08 5',
mRNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP841225.1|BP841225 BP841225 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-32-I24 5',
mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP846818.1|BP846818 BP846818 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-98-F16 5',
mRNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 125 ttcggcgagatgctaatcgatttcgtccc 153
>gb|BP847724.1|BP847724 BP847724 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-02-O15 5',
mRNA sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 122 ttcggcgagatgctaatcgatttcgtccc 150
>gb|BP853917.1|BP853917 BP853917 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-N15 5',
mRNA sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|BP867620.1|BP867620 BP867620 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-81-K18 5',
mRNA sequence
Length = 409
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 125 ttcggcgagatgctaatcgatttcgtccc 153
>gb|BP868813.1|BP868813 BP868813 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-85-K09 5',
mRNA sequence
Length = 383
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 124 ttcggcgagatgctaatcgatttcgtccc 152
>gb|AC024227.3|AC024227 Arabidopsis thaliana chromosome I clone F23H15, *** SEQUENCING IN
PROGRESS ***
Length = 95600
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| || |||||||||||
Sbjct: 7342 ttcggcgagatgctcattgacttcgtccc 7370
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| || |||||||||||
Sbjct: 1824463 ttcggcgagatgctcattgacttcgtccc 1824491
>gb|AF387001.1|AF387001 Arabidopsis thaliana putative fructokinase (At2g31390; T28P16.12)
mRNA, complete cds
Length = 1276
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 173 ttcggcgagatgctgatcgacttcgtccc 201
|||||||||||||| ||||| ||||||||
Sbjct: 125 ttcggcgagatgctaatcgatttcgtccc 153
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 415,181
Number of Sequences: 1013581
Number of extensions: 415181
Number of successful extensions: 30233
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29560
Number of HSP's gapped (non-prelim): 673
length of query: 1549
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1528
effective length of database: 887,655,671
effective search space: 1356337865288
effective search space used: 1356337865288
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)