BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH613307.1|BH613307 SALK_034056 Arabidopsis thaliana TDN... 42 0.097
gb|CC457382.1|CC457382 SALK_109570.42.50.x Arabidopsis thal... 42 0.097
gb|CC457483.1|CC457483 SALK_110259.36.85.x Arabidopsis thal... 42 0.097
gb|AC016041.5|AC016041 Genomic sequence for Arabidopsis tha... 42 0.097
emb|BX818939.1|CNS0A8X4 Arabidopsis thaliana Full-length cD... 42 0.097
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.097
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.097
gb|AV536656.1|AV536656 AV536656 Arabidopsis thaliana liquid... 40 0.38
gb|CK121699.1|CK121699 201o20.p1 AtM1 Arabidopsis thaliana ... 40 0.38
gb|AF083727.1| Arabidopsis thaliana clone sps361 unknown mRNA 40 0.38
gb|AF083771.1| Arabidopsis thaliana clone sps756 unknown mRNA 40 0.38
emb|AX651933.1| Sequence 811 from Patent WO03000898 40 0.38
gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8... 40 0.38
emb|BX816529.1|CNS0ABQ4 Arabidopsis thaliana Full-length cD... 40 0.38
gb|BT015331.1| Arabidopsis thaliana At1g61820 gene, complet... 40 0.38
emb|AJ251301.1|ATH251301 Arabidopsis thaliana mRNA for beta... 40 0.38
ref|NM_180637.1| Arabidopsis thaliana hydrolase, hydrolyzin... 40 0.38
>gb|BH613307.1|BH613307 SALK_034056 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_034056, DNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 99 atattgacgatggaagcaatg 119
>gb|CC457382.1|CC457382 SALK_109570.42.50.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_109570.42.50.x,
DNA sequence
Length = 236
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 68 atattgacgatggaagcaatg 88
>gb|CC457483.1|CC457483 SALK_110259.36.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_110259.36.85.x,
DNA sequence
Length = 366
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 99 atattgacgatggaagcaatg 119
>gb|AC016041.5|AC016041 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome
I, complete sequence
Length = 119091
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 5265 atattgacgatggaagcaatg 5285
>emb|BX818939.1|CNS0A8X4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB29ZE02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1514
Score = 42.1 bits (21), Expect = 0.097
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 323 tttgcttcaagatntttggtgaccgagtaaagcattgggtcacattcaatgagcca 378
|||||||||||| ||||| || |||||||||||||| | ||||| || ||||||
Sbjct: 542 tttgcttcaagaattttggagatagagtaaagcattggatgacattgaacgagcca 597
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 2573615 atattgacgatggaagcaatg 2573595
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 7077429 gatggaagcaatggagacatagctacggaccaatatcatcgata 7077472
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 atattgacgatggaagcaatg 22
|||||||||||||||||||||
Sbjct: 18218021 atattgacgatggaagcaatg 18218001
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 22839778 gatggaagcaatggagacatagctacggaccaatatcatcgata 22839821
>gb|AV536656.1|AV536656 AV536656 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0393R 5', mRNA
sequence
Length = 310
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 65 gatggaagcaatggagacatagctacggaccaatatcatcgata 108
>gb|CK121699.1|CK121699 201o20.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011O20201
5-PRIME, mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 355 cattgggtcacattcaatgagcca 378
|||||| |||||||||||||||||
Sbjct: 36 cattggatcacattcaatgagcca 59
>gb|AF083727.1| Arabidopsis thaliana clone sps361 unknown mRNA
Length = 443
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 261 gatggaagcaatggagacatagctacggaccaatatcatcgata 304
>gb|AF083771.1| Arabidopsis thaliana clone sps756 unknown mRNA
Length = 990
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 355 cattgggtcacattcaatgagcca 378
|||||| |||||||||||||||||
Sbjct: 667 cattggatcacattcaatgagcca 690
>emb|AX651933.1| Sequence 811 from Patent WO03000898
Length = 1584
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 262 gatggaagcaatggagacatagctacggaccaatatcatcgata 305
>gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence
Length = 115641
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 13054 gatggaagcaatggagacatagctacggaccaatatcatcgata 13097
>emb|BX816529.1|CNS0ABQ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH53ZH07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1721
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 263 gatggaagcaatggagacatagctacggaccaatatcatcgata 306
>gb|BT015331.1| Arabidopsis thaliana At1g61820 gene, complete cds
Length = 1528
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 51 gatggaagcaatggagacatagctacggaccaatatcatcgata 94
>emb|AJ251301.1|ATH251301 Arabidopsis thaliana mRNA for beta-glucosidase 1 (bgl1 gene)
Length = 1901
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 355 cattgggtcacattcaatgagcca 378
|||||| |||||||||||||||||
Sbjct: 700 cattggatcacattcaatgagcca 723
>ref|NM_180637.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G61820 transcript variant AT1G61820.1 mRNA, complete
cds
Length = 2096
Score = 40.1 bits (20), Expect = 0.38
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgata 53
|||||||||||||| ||| | ||| | ||||| |||||||||||
Sbjct: 603 gatggaagcaatggagacatagctacggaccaatatcatcgata 646
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,630
Number of Sequences: 1013581
Number of extensions: 199630
Number of successful extensions: 13361
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13024
Number of HSP's gapped (non-prelim): 337
length of query: 541
length of database: 908,940,872
effective HSP length: 20
effective length of query: 521
effective length of database: 888,669,252
effective search space: 462996680292
effective search space used: 462996680292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)