BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL475285.1|CL475285 SAIL_235_F05.v1 SAIL Collection Arab... 38 2.3
gb|BT005924.1| Arabidopsis thaliana At4g33330 gene, complet... 38 2.3
emb|AX720353.1| Sequence 12 from Patent WO03014365 38 2.3
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 38 2.3
dbj|AB007727.1| Arabidopsis thaliana genomic DNA, chromosom... 38 2.3
dbj|AK118592.1| Arabidopsis thaliana At4g33330 mRNA for unk... 38 2.3
dbj|AK175846.1| Arabidopsis thaliana mRNA for putative prot... 38 2.3
dbj|AK176001.1| Arabidopsis thaliana mRNA for putative prot... 38 2.3
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 38 2.3
emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome ... 38 2.3
emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosom... 38 2.3
emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome... 38 2.3
ref|NM_119487.3| Arabidopsis thaliana transferase, transfer... 38 2.3
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 38 2.3
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 38 2.3
gb|BH909962.1|BH909962 SALK_056762.53.35.x Arabidopsis thal... 36 9.0
gb|BZ357818.1|BZ357818 SALK_131279.41.10.x Arabidopsis thal... 36 9.0
gb|N65678.1|N65678 20718 Lambda-PRL2 Arabidopsis thaliana c... 36 9.0
gb|BE038030.1|BE038030 AA08A03 AA Arabidopsis thaliana cDNA... 36 9.0
gb|BE038723.1|BE038723 AB04F02 AB Arabidopsis thaliana cDNA... 36 9.0
gb|AV782013.1|AV782013 AV782013 RAFL4 Arabidopsis thaliana ... 36 9.0
gb|AV789974.1|AV789974 AV789974 RAFL6 Arabidopsis thaliana ... 36 9.0
gb|AV790106.1|AV790106 AV790106 RAFL6 Arabidopsis thaliana ... 36 9.0
gb|AV826362.1|AV826362 AV826362 RAFL8 Arabidopsis thaliana ... 36 9.0
gb|AU239651.1|AU239651 AU239651 RAFL21 Arabidopsis thaliana... 36 9.0
gb|CB257969.1|CB257969 84-E011798-014-004-G22-T7R MPIZ-ADIS... 36 9.0
gb|CB257971.1|CB257971 84-E011802-014-004-G22-T7R MPIZ-ADIS... 36 9.0
gb|CF652849.1|CF652849 80-L020524-066-003-O20-SP6P MPIZ-ADI... 36 9.0
gb|CD530732.1|CD530732 07K05 Arabidopsis Leaf Senescence Li... 36 9.0
gb|CD530742.1|CD530742 07L05 Arabidopsis Leaf Senescence Li... 36 9.0
gb|AV544010.1|AV544010 AV544010 Arabidopsis thaliana roots ... 36 9.0
gb|AV561423.1|AV561423 AV561423 Arabidopsis thaliana green ... 36 9.0
gb|BP571747.1|BP571747 BP571747 RAFL14 Arabidopsis thaliana... 36 9.0
gb|BP575167.1|BP575167 BP575167 RAFL14 Arabidopsis thaliana... 36 9.0
gb|BP594729.1|BP594729 BP594729 RAFL15 Arabidopsis thaliana... 36 9.0
gb|BP597922.1|BP597922 BP597922 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP606270.1|BP606270 BP606270 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP611336.1|BP611336 BP611336 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP615144.1|BP615144 BP615144 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP615183.1|BP615183 BP615183 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP619893.1|BP619893 BP619893 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP620493.1|BP620493 BP620493 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP805188.1|BP805188 BP805188 RAFL16 Arabidopsis thaliana... 36 9.0
gb|BP849167.1|BP849167 BP849167 RAFL21 Arabidopsis thaliana... 36 9.0
gb|BP852398.1|BP852398 BP852398 RAFL21 Arabidopsis thaliana... 36 9.0
gb|BP852633.1|BP852633 BP852633 RAFL21 Arabidopsis thaliana... 36 9.0
gb|AF044216.1|AF044216 Arabidopsis thaliana steroid 22-alph... 36 9.0
gb|AF412114.1|AF412114 Arabidopsis thaliana AT3g50660/T3A5_... 36 9.0
gb|AY090266.1| Arabidopsis thaliana AT3g50660/T3A5_40 mRNA,... 36 9.0
gb|AF370257.1| Arabidopsis thaliana putative E2, ubiquitin-... 36 9.0
gb|AY050948.1| Arabidopsis thaliana unknown protein (At4g15... 36 9.0
gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I... 36 9.0
emb|BX822540.1|CNS0A70Q Arabidopsis thaliana Full-length cD... 36 9.0
dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosom... 36 9.0
dbj|AB012241.1| Arabidopsis thaliana genomic DNA, chromosom... 36 9.0
dbj|AK117378.1| Arabidopsis thaliana At5g41080 mRNA for unk... 36 9.0
dbj|AK118778.1| Arabidopsis thaliana At4g15090 mRNA for unk... 36 9.0
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 36 9.0
emb|AL132979.2|ATT3A5 Arabidopsis thaliana DNA chromosome 3... 36 9.0
emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosom... 36 9.0
emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ... 36 9.0
ref|NM_180783.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJU... 36 9.0
ref|NM_180784.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJU... 36 9.0
ref|NM_180785.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJU... 36 9.0
ref|NM_123535.2| Arabidopsis thaliana UBC8 (UBIQUITIN CONJU... 36 9.0
ref|NM_114926.2| Arabidopsis thaliana DWF4 (DWARF 4) AT3G50... 36 9.0
ref|NM_117597.3| Arabidopsis thaliana ferrous iron binding ... 36 9.0
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 36 9.0
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 36 9.0
>gb|CL475285.1|CL475285 SAIL_235_F05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_235_F05.v1, DNA sequence
Length = 898
Score = 38.2 bits (19), Expect = 2.3
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 707 gtatatagtgcggcaaaagggggtgtg 733
|||||| |||||| |||||||||||||
Sbjct: 844 gtatatggtgcggtaaaagggggtgtg 818
>gb|BT005924.1| Arabidopsis thaliana At4g33330 gene, complete cds
Length = 1791
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 1234 gaggaaaatggaagagaag 1216
>emb|AX720353.1| Sequence 12 from Patent WO03014365
Length = 1002
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 445 gaggaaaatggaagagaag 427
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 11973567 gaggaaaatggaagagaag 11973585
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 4531206 tcactttctccattgaaa 4531189
>dbj|AB007727.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC9
Length = 79590
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 tagattacagccttacagg 32
|||||||||||||||||||
Sbjct: 3266 tagattacagccttacagg 3284
>dbj|AK118592.1| Arabidopsis thaliana At4g33330 mRNA for unknown protein, complete
cds, clone: RAFL19-84-B16
Length = 1919
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 1243 gaggaaaatggaagagaag 1225
>dbj|AK175846.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
RAFL22-46-H06
Length = 1929
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 1243 gaggaaaatggaagagaag 1225
>dbj|AK176001.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
RAFL22-69-H08
Length = 1929
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 1243 gaggaaaatggaagagaag 1225
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 tagattacagccttacagg 32
|||||||||||||||||||
Sbjct: 3707732 tagattacagccttacagg 3707750
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 15247545 ttagaattccatcttcaa 15247528
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 284 tttgcaaggaggggttta 301
||||||||||||||||||
Sbjct: 13942578 tttgcaaggaggggttta 13942595
>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project)
Length = 96475
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 24095 gaggaaaatggaagagaag 24113
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
Length = 199536
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 88874 gaggaaaatggaagagaag 88892
>emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F18 (ESSA project)
Length = 103638
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 tagattacagccttacagg 32
|||||||||||||||||||
Sbjct: 89303 tagattacagccttacagg 89321
>ref|NM_119487.3| Arabidopsis thaliana transferase, transferring glycosyl groups
AT4G33330 mRNA, complete cds
Length = 1930
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 1243 gaggaaaatggaagagaag 1225
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 326 gaggaaaatggaagagaag 344
|||||||||||||||||||
Sbjct: 16060788 gaggaaaatggaagagaag 16060806
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 8618463 tcactttctccattgaaa 8618446
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 tagattacagccttacagg 32
|||||||||||||||||||
Sbjct: 3894763 tagattacagccttacagg 3894781
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 16694623 ttagaattccatcttcaa 16694606
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 284 tttgcaaggaggggttta 301
||||||||||||||||||
Sbjct: 15123660 tttgcaaggaggggttta 15123677
>gb|BH909962.1|BH909962 SALK_056762.53.35.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_056762.53.35.x,
DNA sequence
Length = 222
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 317 gatttctcagaggaaaat 334
||||||||||||||||||
Sbjct: 38 gatttctcagaggaaaat 21
>gb|BZ357818.1|BZ357818 SALK_131279.41.10.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_131279.41.10.x,
DNA sequence
Length = 269
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 316 tgatttctcagaggaaaa 333
||||||||||||||||||
Sbjct: 41 tgatttctcagaggaaaa 24
>gb|N65678.1|N65678 20718 Lambda-PRL2 Arabidopsis thaliana cDNA clone 241A23T7, mRNA
sequence
Length = 311
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 49 tcactttctccattgaaa 32
>gb|BE038030.1|BE038030 AA08A03 AA Arabidopsis thaliana cDNA 5' similar to
ubiquitin-conjugating enzyme e2-17 kd 8, mRNA sequence
Length = 667
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 632 ttagaattccatcttcaa 615
>gb|BE038723.1|BE038723 AB04F02 AB Arabidopsis thaliana cDNA 5' similar to
ubiquitin-conjugating enzyme, mRNA sequence
Length = 733
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 90 ttagaattccatcttcaa 107
>gb|AV782013.1|AV782013 AV782013 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-13-A06 3',
mRNA sequence
Length = 132
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 45 ttagaattccatcttcaa 62
>gb|AV789974.1|AV789974 AV789974 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-J23 3',
mRNA sequence
Length = 426
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 34 ttagaattccatcttcaa 51
>gb|AV790106.1|AV790106 AV790106 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-C04 3',
mRNA sequence
Length = 404
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 116 ttagaattccatcttcaa 133
>gb|AV826362.1|AV826362 AV826362 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-13-H23 5',
mRNA sequence
Length = 461
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 95 tcactttctccattgaaa 78
>gb|AU239651.1|AU239651 AU239651 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-11-K12 5',
mRNA sequence
Length = 638
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 83 tcactttctccattgaaa 66
>gb|CB257969.1|CB257969 84-E011798-014-004-G22-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771G224Q 5-PRIME, mRNA sequence
Length = 265
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 249 ttagaattccatcttcaa 232
>gb|CB257971.1|CB257971 84-E011802-014-004-G22-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771G224Q 5-PRIME, mRNA sequence
Length = 265
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 249 ttagaattccatcttcaa 232
>gb|CF652849.1|CF652849 80-L020524-066-003-O20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001O203Q 5-PRIME, mRNA sequence
Length = 760
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 677 ttagaattccatcttcaa 660
>gb|CD530732.1|CD530732 07K05 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 473
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|CD530742.1|CD530742 07L05 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 588
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|AV544010.1|AV544010 AV544010 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ30f11F 3', mRNA sequence
Length = 446
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 38 ttagaattccatcttcaa 55
>gb|AV561423.1|AV561423 AV561423 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ151c08F 3', mRNA sequence
Length = 582
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|BP571747.1|BP571747 BP571747 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-77-G16 3',
mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|BP575167.1|BP575167 BP575167 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-90-P21 3',
mRNA sequence
Length = 180
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 45 ttagaattccatcttcaa 62
>gb|BP594729.1|BP594729 BP594729 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-27-A15 3',
mRNA sequence
Length = 464
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|BP597922.1|BP597922 BP597922 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-01-I07 3',
mRNA sequence
Length = 422
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 99 ttagaattccatcttcaa 116
>gb|BP606270.1|BP606270 BP606270 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-70-E15 3',
mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 67 ttagaattccatcttcaa 84
>gb|BP611336.1|BP611336 BP611336 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-85-G08 3',
mRNA sequence
Length = 467
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 48 ttagaattccatcttcaa 65
>gb|BP615144.1|BP615144 BP615144 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-14-A19 3',
mRNA sequence
Length = 452
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|BP615183.1|BP615183 BP615183 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-14-D06 3',
mRNA sequence
Length = 464
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 12 ttagaattccatcttcaa 29
>gb|BP619893.1|BP619893 BP619893 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-34-P12 3',
mRNA sequence
Length = 453
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 64 ttagaattccatcttcaa 81
>gb|BP620493.1|BP620493 BP620493 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-37-I07 3',
mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 27 ttagaattccatcttcaa 44
>gb|BP805188.1|BP805188 BP805188 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-04-O22 5',
mRNA sequence
Length = 377
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 61 tcactttctccattgaaa 44
>gb|BP849167.1|BP849167 BP849167 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-C09 5',
mRNA sequence
Length = 389
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 125 tcactttctccattgaaa 108
>gb|BP852398.1|BP852398 BP852398 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-19-M01 5',
mRNA sequence
Length = 376
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 123 tcactttctccattgaaa 106
>gb|BP852633.1|BP852633 BP852633 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-20-I12 5',
mRNA sequence
Length = 363
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 78 tcactttctccattgaaa 61
>gb|AF044216.1|AF044216 Arabidopsis thaliana steroid 22-alpha-hydroxylase (DWF4) gene,
complete cds
Length = 4818
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 2123 agaggaaaatggaagaga 2140
>gb|AF412114.1|AF412114 Arabidopsis thaliana AT3g50660/T3A5_40 mRNA, complete cds
Length = 1691
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 756 agaggaaaatggaagaga 773
>gb|AY090266.1| Arabidopsis thaliana AT3g50660/T3A5_40 mRNA, complete cds
Length = 1542
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 728 agaggaaaatggaagaga 745
>gb|AF370257.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC8
(At5g41700) mRNA, complete cds
Length = 810
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 744 ttagaattccatcttcaa 727
>gb|AY050948.1| Arabidopsis thaliana unknown protein (At4g15093) mRNA, complete cds
Length = 1059
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 94 tcactttctccattgaaa 77
>gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 map mi398, complete
sequence
Length = 85214
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 atacaatggactagatat 492
||||||||||||||||||
Sbjct: 37788 atacaatggactagatat 37805
>emb|BX822540.1|CNS0A70Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB47ZE02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1797
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 790 agaggaaaatggaagaga 807
>dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23
Length = 79837
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 72350 ttagaattccatcttcaa 72333
>dbj|AB012241.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18L3
Length = 78239
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 284 tttgcaaggaggggttta 301
||||||||||||||||||
Sbjct: 43355 tttgcaaggaggggttta 43372
>dbj|AK117378.1| Arabidopsis thaliana At5g41080 mRNA for unknown protein, complete
cds, clone: RAFL16-95-M21
Length = 2157
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 685 ttagaattccatcttcaa 668
>dbj|AK118778.1| Arabidopsis thaliana At4g15090 mRNA for unknown protein, complete
cds, clone: RAFL21-11-K12
Length = 1032
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 83 tcactttctccattgaaa 66
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 18779632 agaggaaaatggaagaga 18779615
>emb|AL132979.2|ATT3A5 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5
Length = 84196
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 28009 agaggaaaatggaagaga 27992
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40
Length = 197405
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 128988 tcactttctccattgaaa 128971
>emb|Z97337.2|ATFCA2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2
Length = 202860
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 183534 tcactttctccattgaaa 183517
>ref|NM_180783.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJUGATING ENZYME 8);
ubiquitin conjugating enzyme AT5G41700 (UBC8) transcript
variant AT5G41700.1 mRNA, complete cds
Length = 864
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 750 ttagaattccatcttcaa 733
>ref|NM_180784.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJUGATING ENZYME 8);
ubiquitin conjugating enzyme AT5G41700 (UBC8) transcript
variant AT5G41700.2 mRNA, complete cds
Length = 909
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 795 ttagaattccatcttcaa 778
>ref|NM_180785.1| Arabidopsis thaliana UBC8 (UBIQUITIN CONJUGATING ENZYME 8);
ubiquitin conjugating enzyme AT5G41700 (UBC8) transcript
variant AT5G41700.3 mRNA, complete cds
Length = 1006
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 892 ttagaattccatcttcaa 875
>ref|NM_123535.2| Arabidopsis thaliana UBC8 (UBIQUITIN CONJUGATING ENZYME 8);
ubiquitin conjugating enzyme AT5G41700 (UBC8) transcript
variant AT5G41700.4 mRNA, complete cds
Length = 803
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 390 ttagaattccatcttcaa 407
||||||||||||||||||
Sbjct: 689 ttagaattccatcttcaa 672
>ref|NM_114926.2| Arabidopsis thaliana DWF4 (DWARF 4) AT3G50660 (DWF4) mRNA, complete
cds
Length = 1728
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 793 agaggaaaatggaagaga 810
>ref|NM_117597.3| Arabidopsis thaliana ferrous iron binding / oxidoreductase
AT4G15093 mRNA, complete cds
Length = 1065
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 749 tcactttctccattgaaa 766
||||||||||||||||||
Sbjct: 94 tcactttctccattgaaa 77
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 atacaatggactagatat 492
||||||||||||||||||
Sbjct: 6424378 atacaatggactagatat 6424395
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 325 agaggaaaatggaagaga 342
||||||||||||||||||
Sbjct: 18827159 agaggaaaatggaagaga 18827142
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 419,894
Number of Sequences: 1013581
Number of extensions: 419894
Number of successful extensions: 32439
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30232
Number of HSP's gapped (non-prelim): 2207
length of query: 808
length of database: 908,940,872
effective HSP length: 20
effective length of query: 788
effective length of database: 888,669,252
effective search space: 700271370576
effective search space used: 700271370576
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)