BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAT2e04.yg.2.1
         (424 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE526344.1|BE526344  M65C21STM Arabidopsis developing see...    48   0.001
emb|AJ270060.1|  Arabidopsis thaliana DNA chromosome 4, long...    48   0.001
emb|AL080282.1|ATT13K14  Arabidopsis thaliana DNA chromosome...    48   0.001
emb|AL161554.2|ATCHRIV54  Arabidopsis thaliana DNA chromosom...    48   0.001
ref|NM_118224.2|  Arabidopsis thaliana transferase, transfer...    48   0.001
ref|NC_003075.3|  Arabidopsis thaliana chromosome 4, complet...    48   0.001

>gb|BE526344.1|BE526344 M65C21STM Arabidopsis developing seed Arabidopsis thaliana cDNA
           clone 600034982R1 5', mRNA sequence
          Length = 257

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 258 aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
           |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 86  aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 145

                   
Query: 318 ctagtggt 325
           ||||||||
Sbjct: 146 ctagtggt 153



>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
          Length = 14497843

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                           
Query: 258     aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
               |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 7156692 aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 7156751

                       
Query: 318     ctagtggt 325
               ||||||||
Sbjct: 7156752 ctagtggt 7156759



>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project)
          Length = 91570

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 258   aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
             |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 83031 aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 83090

                     
Query: 318   ctagtggt 325
             ||||||||
Sbjct: 83091 ctagtggt 83098



>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 258   aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
             |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 55509 aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 55568

                     
Query: 318   ctagtggt 325
             ||||||||
Sbjct: 55569 ctagtggt 55576



>ref|NM_118224.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
            transferase, transferring hexosyl groups AT4G21060 mRNA,
            complete cds
          Length = 2226

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                        
Query: 258  aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
            |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 1636 aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 1695

                    
Query: 318  ctagtggt 325
            ||||||||
Sbjct: 1696 ctagtggt 1703



>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
          Length = 18585042

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 258      aagaaggaagcagagtattttggagacatagtcattctgccgttcatcgaccggtatgag 317
                |||||||| || || ||||||||||| || || |||||||| || || || || ||||||
Sbjct: 11243943 aagaaggaggctgaatattttggagatattgtgattctgccctttatggatcgatatgag 11244002

                        
Query: 318      ctagtggt 325
                ||||||||
Sbjct: 11244003 ctagtggt 11244010



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,044
Number of Sequences: 1013581
Number of extensions: 182044
Number of successful extensions: 11336
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11195
Number of HSP's gapped (non-prelim): 141
length of query: 424
length of database: 908,940,872
effective HSP length: 20
effective length of query: 404
effective length of database: 888,669,252
effective search space: 359022377808
effective search space used: 359022377808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)