BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY050776.1| Arabidopsis thaliana putative mannosidase (A... 147 1e-032
gb|BT000893.1| Arabidopsis thaliana clone C104782 putative ... 147 1e-032
ref|NM_113010.2| Arabidopsis thaliana calcium ion binding /... 147 1e-032
gb|AY081353.1| Arabidopsis thaliana mannosyl-oligosaccharid... 131 6e-028
gb|AY128845.1| Arabidopsis thaliana mannosyl-oligosaccharid... 131 6e-028
ref|NM_104037.3| Arabidopsis thaliana calcium ion binding /... 131 6e-028
ref|NM_001036094.1| Arabidopsis thaliana calcium ion bindin... 131 6e-028
emb|BX814822.1|CNS0ADKY Arabidopsis thaliana Full-length cD... 123 1e-025
dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosom... 121 6e-025
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 121 6e-025
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 121 6e-025
gb|BX835997.1|BX835997 BX835997 Arabidopsis thaliana Hormon... 115 3e-023
gb|CC793592.1|CC793592 SALK_015983.49.40.x Arabidopsis thal... 113 1e-022
gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 B... 113 1e-022
gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BA... 113 1e-022
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 113 1e-022
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 113 1e-022
gb|BP636181.1|BP636181 BP636181 RAFL18 Arabidopsis thaliana... 105 3e-020
gb|W43154.1|W43154 22535 Lambda-PRL2 Arabidopsis thaliana c... 100 2e-018
gb|BP814291.1|BP814291 BP814291 RAFL19 Arabidopsis thaliana... 92 5e-016
gb|AV799767.1|AV799767 AV799767 RAFL9 Arabidopsis thaliana ... 88 8e-015
gb|AV791592.1|AV791592 AV791592 RAFL7 Arabidopsis thaliana ... 84 1e-013
gb|AV810727.1|AV810727 AV810727 RAFL9 Arabidopsis thaliana ... 80 2e-012
gb|AV816885.1|AV816885 AV816885 RAFL9 Arabidopsis thaliana ... 80 2e-012
gb|BP589081.1|BP589081 BP589081 RAFL15 Arabidopsis thaliana... 70 2e-009
gb|CW795315.1|CW795315 WiscDsLox432B01 Arabidopsis thaliana... 66 3e-008
gb|BX840025.1|BX840025 BX840025 Arabidopsis thaliana Hormon... 60 2e-006
gb|BP562231.1|BP562231 BP562231 RAFL9 Arabidopsis thaliana ... 60 2e-006
gb|BP642058.1|BP642058 BP642058 RAFL19 Arabidopsis thaliana... 50 0.002
gb|BP786800.1|BP786800 BP786800 RAFL7 Arabidopsis thaliana ... 50 0.002
gb|BX841199.1|BX841199 BX841199 Arabidopsis thaliana Flower... 48 0.007
gb|CL508709.1|CL508709 SAIL_802_C04.v2 SAIL Collection Arab... 42 0.41
gb|AV562216.1|AV562216 AV562216 Arabidopsis thaliana green ... 42 0.41
gb|BP604115.1|BP604115 BP604115 RAFL16 Arabidopsis thaliana... 42 0.41
gb|BP793040.1|BP793040 BP793040 RAFL7 Arabidopsis thaliana ... 42 0.41
>gb|AY050776.1| Arabidopsis thaliana putative mannosidase (At3g21160) mRNA, complete
cds
Length = 1936
Score = 147 bits (74), Expect = 1e-032
Identities = 245/302 (81%)
Strand = Plus / Plus
Query: 1440 gacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatg 1499
|||||| |||| || ||||||||||||||||||||||| || ||||| ||||||||| |
Sbjct: 1379 gacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactgttt 1438
Query: 1500 tacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattccag 1559
||||| ||||| || || || || || ||||| ||||| ||||| ||| | ||||| |
Sbjct: 1439 tacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatatttgaa 1498
Query: 1560 gcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacact 1619
||||||||||||||||| |||||||| ||||||||||| || ||| ||||| || ||
Sbjct: 1499 gcatttgagaagaactcgcgcatagagtctggatatgttggtttgaaggatgttaataca 1558
Query: 1620 ggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtac 1679
|| | || ||||||| |||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 1559 ggcgttaaggacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctat 1618
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||| ||||| || || ||||||| | || ||||||||||| ||||| || ||||||
Sbjct: 1619 ctactcttctcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagct 1678
Query: 1740 ca 1741
||
Sbjct: 1679 ca 1680
Score = 71.9 bits (36), Expect = 5e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 998 acatttggtgccatgggagacagcttttacgaatatttgctcaa 1041
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 812 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 871
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 872 ggggacccaaaatatcagcaaaagg 896
Score = 58.0 bits (29), Expect = 7e-006
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 615 tttcagaaagctagagactgggtggcggagtcattagactttgacaaggattatgatgcg 674
||||||||||| ||||| ||||| || |||||||| || ||||||||||||| |||
Sbjct: 551 tttcagaaagccagagagtgggtagcaagctcattagatttcgacaaggattatgctgcc 610
Query: 675 agtgtttttgaaacgaccataagggttgttggaggtctgcttagttcatacgatctatct 734
||| | ||||| || |||||||| || || ||||| || || ||| | || ||||| |||
Sbjct: 611 agtatgtttgagacaaccataagagtggtaggagggcttctcagtgcgtatgatctttct 670
Query: 735 ggtgataaagtatttcttgataaggctaaagatattacaga 775
|| |||||| | || ||||| ||||||| |||||| ||||
Sbjct: 671 ggggataaaattttccttgaaaaggctatggatattgcaga 711
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatgga 508
|||||||||||||||| | |||||||||| ||| ||| ||||||||||||||| ||
Sbjct: 385 agttaaagaggcaatggttcatgcttggagttcacatgaaaagtatgcctggggacaaga 444
Query: 509 cgagcttcagccacaatcgaagaatggtatcaacagctttggtgg 553
||||||||||| || | ||| ||||| | |||||||||||||
Sbjct: 445 tgagcttcagccccagacaaaggatggtgttgacagctttggtgg 489
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 1193 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 1248
>gb|BT000893.1| Arabidopsis thaliana clone C104782 putative mannosidase (At3g21160)
mRNA, complete cds
Length = 1750
Score = 147 bits (74), Expect = 1e-032
Identities = 245/302 (81%)
Strand = Plus / Plus
Query: 1440 gacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatg 1499
|||||| |||| || ||||||||||||||||||||||| || ||||| ||||||||| |
Sbjct: 1297 gacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactgttt 1356
Query: 1500 tacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattccag 1559
||||| ||||| || || || || || ||||| ||||| ||||| ||| | ||||| |
Sbjct: 1357 tacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatatttgaa 1416
Query: 1560 gcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacact 1619
||||||||||||||||| |||||||| ||||||||||| || ||| ||||| || ||
Sbjct: 1417 gcatttgagaagaactcgcgcatagagtctggatatgttggtttgaaggatgttaataca 1476
Query: 1620 ggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtac 1679
|| | || ||||||| |||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 1477 ggcgttaaggacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctat 1536
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||| ||||| || || ||||||| | || ||||||||||| ||||| || ||||||
Sbjct: 1537 ctactcttctcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagct 1596
Query: 1740 ca 1741
||
Sbjct: 1597 ca 1598
Score = 71.9 bits (36), Expect = 5e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 916 acatttggtgccatgggagacagcttttacgaatatttgctcaa 959
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 730 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 789
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 790 ggggacccaaaatatcagcaaaagg 814
Score = 65.9 bits (33), Expect = 3e-008
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatgga 508
|||||||||||||||| | |||||||||| ||| |||| ||||||||||||||| ||
Sbjct: 303 agttaaagaggcaatggttcatgcttggagttcatatgaaaagtatgcctggggacaaga 362
Query: 509 cgagcttcagccacaatcgaagaatggtatcaacagctttggtgg 553
||||||||||| || | ||| ||||| | |||||||||||||
Sbjct: 363 tgagcttcagccccagacaaaggatggtgttgacagctttggtgg 407
Score = 58.0 bits (29), Expect = 7e-006
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 615 tttcagaaagctagagactgggtggcggagtcattagactttgacaaggattatgatgcg 674
||||||||||| ||||| ||||| || |||||||| || ||||||||||||| |||
Sbjct: 469 tttcagaaagccagagagtgggtagcaagctcattagatttcgacaaggattatgctgcc 528
Query: 675 agtgtttttgaaacgaccataagggttgttggaggtctgcttagttcatacgatctatct 734
||| | ||||| || |||||||| || || ||||| || || ||| | || ||||| |||
Sbjct: 529 agtatgtttgagacaaccataagagtggtaggagggcttctcagtgcgtatgatctttct 588
Query: 735 ggtgataaagtatttcttgataaggctaaagatattacaga 775
|| |||||| | || ||||| ||||||| |||||| ||||
Sbjct: 589 ggggataaaattttccttgaaaaggctatggatattgcaga 629
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 1111 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 1166
>ref|NM_113010.2| Arabidopsis thaliana calcium ion binding / mannosyl-oligosaccharide
1,2-alpha-mannosidase AT3G21160 mRNA, complete cds
Length = 2083
Score = 147 bits (74), Expect = 1e-032
Identities = 245/302 (81%)
Strand = Plus / Plus
Query: 1440 gacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatg 1499
|||||| |||| || ||||||||||||||||||||||| || ||||| ||||||||| |
Sbjct: 1379 gacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactgttt 1438
Query: 1500 tacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattccag 1559
||||| ||||| || || || || || ||||| ||||| ||||| ||| | ||||| |
Sbjct: 1439 tacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatatttgaa 1498
Query: 1560 gcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacact 1619
||||||||||||||||| |||||||| ||||||||||| || ||| ||||| || ||
Sbjct: 1499 gcatttgagaagaactcgcgcatagagtctggatatgttggtttgaaggatgttaataca 1558
Query: 1620 ggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtac 1679
|| | || ||||||| |||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 1559 ggcgttaaggacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctat 1618
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||| ||||| || || ||||||| | || ||||||||||| ||||| || ||||||
Sbjct: 1619 ctactcttctcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagct 1678
Query: 1740 ca 1741
||
Sbjct: 1679 ca 1680
Score = 71.9 bits (36), Expect = 5e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 998 acatttggtgccatgggagacagcttttacgaatatttgctcaa 1041
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 812 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 871
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 872 ggggacccaaaatatcagcaaaagg 896
Score = 65.9 bits (33), Expect = 3e-008
Identities = 87/105 (82%)
Strand = Plus / Plus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatgga 508
|||||||||||||||| | |||||||||| ||| |||| ||||||||||||||| ||
Sbjct: 385 agttaaagaggcaatggttcatgcttggagttcatatgaaaagtatgcctggggacaaga 444
Query: 509 cgagcttcagccacaatcgaagaatggtatcaacagctttggtgg 553
||||||||||| || | ||| ||||| | |||||||||||||
Sbjct: 445 tgagcttcagccccagacaaaggatggtgttgacagctttggtgg 489
Score = 58.0 bits (29), Expect = 7e-006
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 615 tttcagaaagctagagactgggtggcggagtcattagactttgacaaggattatgatgcg 674
||||||||||| ||||| ||||| || |||||||| || ||||||||||||| |||
Sbjct: 551 tttcagaaagccagagagtgggtagcaagctcattagatttcgacaaggattatgctgcc 610
Query: 675 agtgtttttgaaacgaccataagggttgttggaggtctgcttagttcatacgatctatct 734
||| | ||||| || |||||||| || || ||||| || || ||| | || ||||| |||
Sbjct: 611 agtatgtttgagacaaccataagagtggtaggagggcttctcagtgcgtatgatctttct 670
Query: 735 ggtgataaagtatttcttgataaggctaaagatattacaga 775
|| |||||| | || ||||| ||||||| |||||| ||||
Sbjct: 671 ggggataaaattttccttgaaaaggctatggatattgcaga 711
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 1193 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 1248
>gb|AY081353.1| Arabidopsis thaliana mannosyl-oligosaccharide 1,2-alpha-mannosidase,
putative (At1g51590) mRNA, complete cds
Length = 1993
Score = 131 bits (66), Expect = 6e-028
Identities = 243/302 (80%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 1464 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 1523
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 1524 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 1583
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| ||||||||||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct: 1584 caagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaat 1643
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
|| |||| |||||||||| |||||| || |||||| | || ||||| || ||||| ||
Sbjct: 1644 acaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatcta 1703
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || || || || ||| |||| || || || || ||||||||||||||||| || |||
Sbjct: 1704 tatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaa 1763
Query: 1737 gc 1738
||
Sbjct: 1764 gc 1765
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 471 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 530
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 531 gatgagcttcagcc 544
Score = 54.0 bits (27), Expect = 1e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 657 gacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctt 716
|||||||||||||| || ||| | ||||| || |||||||| ||||| || || || |||
Sbjct: 681 gacaaggattatgacgccagtatgtttgagacaaccataagagttgtaggcggacttctt 740
Query: 717 agttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacaga 775
||| | || ||||| ||||| || ||| | || ||||| |||||||| |||||| ||||
Sbjct: 741 agtgcgtatgatctttctggggacaaaatgttccttgaaaaggctaaggatattgcaga 799
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 1089 acatttggtgccatgggagatagcttttatgagtatttgctcaa 1132
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 1284 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 1330
>gb|AY128845.1| Arabidopsis thaliana mannosyl-oligosaccharide 1,2-alpha-mannosidase,
putative (At1g51590) mRNA, complete cds
Length = 1801
Score = 131 bits (66), Expect = 6e-028
Identities = 243/302 (80%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 1291 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 1350
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 1351 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 1410
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| ||||||||||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct: 1411 caagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaat 1470
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
|| |||| |||||||||| |||||| || |||||| | || ||||| || ||||| ||
Sbjct: 1471 acaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatcta 1530
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || || || || ||| |||| || || || || ||||||||||||||||| || |||
Sbjct: 1531 tatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaa 1590
Query: 1737 gc 1738
||
Sbjct: 1591 gc 1592
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 298 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 357
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 358 gatgagcttcagcc 371
Score = 54.0 bits (27), Expect = 1e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 657 gacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctt 716
|||||||||||||| || ||| | ||||| || |||||||| ||||| || || || |||
Sbjct: 508 gacaaggattatgacgccagtatgtttgagacaaccataagagttgtaggcggacttctt 567
Query: 717 agttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacaga 775
||| | || ||||| ||||| || ||| | || ||||| |||||||| |||||| ||||
Sbjct: 568 agtgcgtatgatctttctggggacaaaatgttccttgaaaaggctaaggatattgcaga 626
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 916 acatttggtgccatgggagatagcttttatgagtatttgctcaa 959
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 1111 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 1157
>ref|NM_104037.3| Arabidopsis thaliana calcium ion binding / mannosyl-oligosaccharide
1,2-alpha-mannosidase AT1G51590 transcript variant
AT1G51590.1 mRNA, complete cds
Length = 1994
Score = 131 bits (66), Expect = 6e-028
Identities = 243/302 (80%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 1464 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 1523
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 1524 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 1583
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| ||||||||||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct: 1584 caagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaat 1643
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
|| |||| |||||||||| |||||| || |||||| | || ||||| || ||||| ||
Sbjct: 1644 acaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatcta 1703
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || || || || ||| |||| || || || || ||||||||||||||||| || |||
Sbjct: 1704 tatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaa 1763
Query: 1737 gc 1738
||
Sbjct: 1764 gc 1765
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 471 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 530
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 531 gatgagcttcagcc 544
Score = 54.0 bits (27), Expect = 1e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 657 gacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctt 716
|||||||||||||| || ||| | ||||| || |||||||| ||||| || || || |||
Sbjct: 681 gacaaggattatgacgccagtatgtttgagacaaccataagagttgtaggcggacttctt 740
Query: 717 agttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacaga 775
||| | || ||||| ||||| || ||| | || ||||| |||||||| |||||| ||||
Sbjct: 741 agtgcgtatgatctttctggggacaaaatgttccttgaaaaggctaaggatattgcaga 799
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 1089 acatttggtgccatgggagatagcttttatgagtatttgctcaa 1132
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 1284 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 1330
>ref|NM_001036094.1| Arabidopsis thaliana calcium ion binding / mannosyl-oligosaccharide
1,2-alpha-mannosidase AT1G51590 transcript variant
AT1G51590.2 mRNA, complete cds
Length = 2036
Score = 131 bits (66), Expect = 6e-028
Identities = 243/302 (80%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 1473 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 1532
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 1533 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 1592
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| ||||||||||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct: 1593 caagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaat 1652
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
|| |||| |||||||||| |||||| || |||||| | || ||||| || ||||| ||
Sbjct: 1653 acaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatcta 1712
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || || || || ||| |||| || || || || ||||||||||||||||| || |||
Sbjct: 1713 tatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaa 1772
Query: 1737 gc 1738
||
Sbjct: 1773 gc 1774
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 480 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 539
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 540 gatgagcttcagcc 553
Score = 54.0 bits (27), Expect = 1e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 657 gacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctt 716
|||||||||||||| || ||| | ||||| || |||||||| ||||| || || || |||
Sbjct: 690 gacaaggattatgacgccagtatgtttgagacaaccataagagttgtaggcggacttctt 749
Query: 717 agttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacaga 775
||| | || ||||| ||||| || ||| | || ||||| |||||||| |||||| ||||
Sbjct: 750 agtgcgtatgatctttctggggacaaaatgttccttgaaaaggctaaggatattgcaga 808
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 1098 acatttggtgccatgggagatagcttttatgagtatttgctcaa 1141
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 1293 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 1339
>emb|BX814822.1|CNS0ADKY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB9ZE06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1917
Score = 123 bits (62), Expect = 1e-025
Identities = 239/298 (80%)
Strand = Plus / Plus
Query: 1441 acatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactgatgt 1500
||||| |||| ||||| || |||||||| || ||||| || || |||||||||||| | |
Sbjct: 1463 acatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactgtttt 1522
Query: 1501 acctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattccagg 1560
|||| ||||| || || ||||| || ||||| ||||| ||||| ||| | ||||| || |
Sbjct: 1523 acctctggcgattaactgggaacaagacatatcaagagtggggatggaatatatttcaag 1582
Query: 1561 catttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacactg 1620
|||||||||||||||| ||| |||||||||||||||| || ||| ||||| || || |
Sbjct: 1583 catttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaatacag 1642
Query: 1621 gtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacc 1680
||| |||||||||| |||||| || |||||| | || ||||| || ||||| || || |
Sbjct: 1643 gtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatc 1702
Query: 1681 tacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
| || || || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 1703 ttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 1760
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
||||| |||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 459 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggg 514
Score = 54.0 bits (27), Expect = 1e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 657 gacaaggattatgatgcgagtgtttttgaaacgaccataagggttgttggaggtctgctt 716
|||||||||||||| || ||| | ||||| || |||||||| ||||| || || || |||
Sbjct: 670 gacaaggattatgacgccagtttgtttgagacaaccataagagttgtaggcggacttctt 729
Query: 717 agttcatacgatctatctggtgataaagtatttcttgataaggctaaagatattacaga 775
||| | || ||||| ||||| || ||| | || ||||| |||||||| |||||| ||||
Sbjct: 730 agtgcgtatgatctttctggggacaaaatgttccttgaaaaggctaaggatattgcaga 788
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 1080 acatttggtgccatgggagatagcttttatgagtatttgctcaa 1123
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 1275 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 1321
>dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6
Length = 63748
Score = 121 bits (61), Expect = 6e-025
Identities = 136/161 (84%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 60245 caggacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactg 60186
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || || || || ||||| ||||| ||||| ||| | |||||
Sbjct: 60185 ttttacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatattt 60126
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 60125 gaagcatttgagaagaactcgcgcatagagtctggatatgt 60085
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 61640 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 61581
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 61580 ggggacccaaaatatcagcaaaagg 61556
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 1629 gacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttc 1688
||||||| |||||| ||||||||||| |||||||| || ||||| || || ||||| |||
Sbjct: 59918 gacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctatctactcttc 59859
Query: 1689 tcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctca 1741
|| || || ||||||| | || ||||||||||| ||||| || ||||||||
Sbjct: 59858 tcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagctca 59806
Score = 61.9 bits (31), Expect = 4e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||| | |||||||||| ||| |||| |||||||||||||||
Sbjct: 63167 agttaaagaggcaatggttcatgcttggagttcatatgaaaagtatgcctgggga 63113
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 60642 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 60587
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 645 tcattagactttgacaaggattatgatgcgagtgtttttgaaacgaccataagg 698
|||||||| || ||||||||||||| ||| ||| | ||||| || |||||||||
Sbjct: 62466 tcattagatttcgacaaggattatgctgccagtatgtttgagacaaccataagg 62413
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1081 acagcttctacgaatatttgctcaa 1105
||||||| |||||||||||||||||
Sbjct: 61104 acagcttttacgaatatttgctcaa 61080
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 121 bits (61), Expect = 6e-025
Identities = 136/161 (84%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 7367797 caggacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactg 7367738
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || || || || ||||| ||||| ||||| ||| | |||||
Sbjct: 7367737 ttttacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatattt 7367678
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 7367677 gaagcatttgagaagaactcgcgcatagagtctggatatgt 7367637
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 7369192 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 7369133
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 7369132 ggggacccaaaatatcagcaaaagg 7369108
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 1629 gacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttc 1688
||||||| |||||| ||||||||||| |||||||| || ||||| || || ||||| |||
Sbjct: 7367470 gacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctatctactcttc 7367411
Query: 1689 tcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctca 1741
|| || || ||||||| | || ||||||||||| ||||| || ||||||||
Sbjct: 7367410 tcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagctca 7367358
Score = 61.9 bits (31), Expect = 4e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||| | |||||||||| ||| |||| |||||||||||||||
Sbjct: 7370719 agttaaagaggcaatggttcatgcttggagttcatatgaaaagtatgcctgggga 7370665
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 7368194 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 7368139
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 645 tcattagactttgacaaggattatgatgcgagtgtttttgaaacgaccataagg 698
|||||||| || ||||||||||||| ||| ||| | ||||| || |||||||||
Sbjct: 7370018 tcattagatttcgacaaggattatgctgccagtatgtttgagacaaccataagg 7369965
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1081 acagcttctacgaatatttgctcaa 1105
||||||| |||||||||||||||||
Sbjct: 7368656 acagcttttacgaatatttgctcaa 7368632
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 121 bits (61), Expect = 6e-025
Identities = 136/161 (84%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 7414695 caggacatgagtgttggaacgtcgtggaacatcttgagaccagaaactgtcgaatcactg 7414636
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || || || || ||||| ||||| ||||| ||| | |||||
Sbjct: 7414635 ttttacctctggcggttaactggaaacaagacatatcaagagtggggatggaatatattt 7414576
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 7414575 gaagcatttgagaagaactcgcgcatagagtctggatatgt 7414535
Score = 65.9 bits (33), Expect = 3e-008
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcatagctctttcacagaggact 935
||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||||||||
Sbjct: 7416090 agtattcttgcagattctggtactgagcagcttgaatttattgccctttcccagaggaca 7416031
Query: 936 ggagatcccaaataccagcagaagg 960
|| || || ||||| ||||| ||||
Sbjct: 7416030 ggggacccaaaatatcagcaaaagg 7416006
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 1629 gacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttc 1688
||||||| |||||| ||||||||||| |||||||| || ||||| || || ||||| |||
Sbjct: 7414368 gacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctatctactcttc 7414309
Query: 1689 tcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctca 1741
|| || || ||||||| | || ||||||||||| ||||| || ||||||||
Sbjct: 7414308 tcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagctca 7414256
Score = 61.9 bits (31), Expect = 4e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 449 agttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggga 503
|||||||||||||||| | |||||||||| ||| |||| |||||||||||||||
Sbjct: 7417617 agttaaagaggcaatggttcatgcttggagttcatatgaaaagtatgcctgggga 7417563
Score = 48.1 bits (24), Expect = 0.007
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttaggtgcctctgg 1312
|||||||||||| | || |||||||||||||| ||| |||| ||||| || |||||
Sbjct: 7415092 aagatggatgaattggcatgctttgctcctggaatgttggctttaggagcatctgg 7415037
Score = 44.1 bits (22), Expect = 0.10
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 645 tcattagactttgacaaggattatgatgcgagtgtttttgaaacgaccataagg 698
|||||||| || ||||||||||||| ||| ||| | ||||| || |||||||||
Sbjct: 7416916 tcattagatttcgacaaggattatgctgccagtatgtttgagacaaccataagg 7416863
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1081 acagcttctacgaatatttgctcaa 1105
||||||| |||||||||||||||||
Sbjct: 7415554 acagcttttacgaatatttgctcaa 7415530
>gb|BX835997.1|BX835997 BX835997 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH12ZF08 3PRIM, mRNA
sequence
Length = 985
Score = 115 bits (58), Expect = 3e-023
Identities = 241/302 (79%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || |||||||||||
Sbjct: 506 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactc 447
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | ||||
Sbjct: 446 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatatct 387
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| ||||||||||||||||| ||| |||||||||||||||| || ||| ||||| ||
Sbjct: 386 caagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaat 327
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
|| |||| |||||||||| |||||| || |||||| | || ||||| || ||||| ||
Sbjct: 326 acaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatcta 267
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || || || || ||| |||| || || || || ||||||||||||||||| || |||
Sbjct: 266 tatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaa 207
Query: 1737 gc 1738
||
Sbjct: 206 gc 205
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 881 acatttggtgccatgggagatagcttttatgagtatttgctcaa 838
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1257 aagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 686 aagatggatgaattggcgtgctttgctcctggaatgttggctttagg 640
>gb|CC793592.1|CC793592 SALK_015983.49.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_015983.49.40.x,
DNA sequence
Length = 445
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 254 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 195
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 194 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 135
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
|| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 134 caagcatttgagaagaactctcgcgtagaatctggatatgt 94
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
sequence
Length = 124511
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 116916 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 116975
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 116976 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 117035
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
|| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 117036 caagcatttgagaagaactctcgcgtagaatctggatatgt 117076
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
||||| |||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 114306 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggg 114361
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 116579 agatggatgaattggcgtgctttgctcctggaatgttggctttagg 116624
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 117209 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 117268
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 117269 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 117321
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
sequence
Length = 92652
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 11936 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 11995
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 11996 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 12055
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
|| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 12056 caagcatttgagaagaactctcgcgtagaatctggatatgt 12096
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
||||| |||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 9326 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggg 9381
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 11599 agatggatgaattggcgtgctttgctcctggaatgttggctttagg 11644
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 12229 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 12288
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 12289 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 12341
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 3488074 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 3488015
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 3488014 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 3487955
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
|| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3487954 caagcatttgagaagaactctcgcgtagaatctggatatgt 3487914
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
||||| |||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 3490684 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggg 3490629
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 3488411 agatggatgaattggcgtgctttgctcctggaatgttggctttagg 3488366
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 3487781 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 3487722
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 3487721 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 3487669
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 113 bits (57), Expect = 1e-022
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| ||||| || |||||||| || ||||| || || ||||||||||||
Sbjct: 19132479 caggacatgagtgttggcacatcttggaacattttaagaccagaaaccgttgaatcactg 19132420
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||||| || || ||||| || ||||| ||||| ||||| ||| | |||||
Sbjct: 19132419 ttttacctctggcgattaactgggaacaagacatatcaagagtggggatggaatatattt 19132360
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgt 1597
|| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 19132359 caagcatttgagaagaactctcgcgtagaatctggatatgt 19132319
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctgggg 502
||||| |||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 19135089 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggg 19135034
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 1258 agatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 19132816 agatggatgaattggcgtgctttgctcctggaatgttggctttagg 19132771
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 19132186 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 19132127
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 19132126 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 19132074
>gb|BP636181.1|BP636181 BP636181 RAFL18 Arabidopsis thaliana cDNA clone RAFL18-03-K19 3',
mRNA sequence
Length = 455
Score = 105 bits (53), Expect = 3e-020
Identities = 203/253 (80%)
Strand = Plus / Minus
Query: 1486 ttgaatcactgatgtacctgtggcgcttgacggggaataaaacataccaagattgggggt 1545
||||||||||| | ||||| ||||| || || ||||| || ||||| ||||| ||||| |
Sbjct: 454 ttgaatcactgttttacctctggcgattaactgggaacaagacatatcaagagtggggat 395
Query: 1546 gggacatattccaggcatttgagaagaactcccgcatagaatctggatatgtgggactga 1605
|| | ||||| || ||||||||||||||||| ||| |||||||||||||||| || |||
Sbjct: 394 ggaatatatttcaagcatttgagaagaactctcgcgtagaatctggatatgtaggcttga 335
Query: 1606 gagatgtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgc 1665
||||| || || |||| |||||||||| |||||| || |||||| | || ||||| |
Sbjct: 334 aggatgtcaatacaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactc 275
Query: 1666 tgaagtacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttt 1725
| ||||| || || || || || || ||| |||| || || || || |||||||||||||
Sbjct: 274 ttaagtatctatatcttctcttttcgccttcatctgttatttcattagacgagtgggttt 215
Query: 1726 tcaatactgaagc 1738
|||| || |||||
Sbjct: 214 tcaacacagaagc 202
>gb|W43154.1|W43154 22535 Lambda-PRL2 Arabidopsis thaliana cDNA clone 247M14T7, mRNA
sequence
Length = 350
Score = 99.6 bits (50), Expect = 2e-018
Identities = 165/206 (80%)
Strand = Plus / Plus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| || | ||||| || ||||||| || ||||| || || ||||||||||||
Sbjct: 92 caggacatgagtntnggcacatctnggaacattttaagaccagaaaccgttgaatcactg 151
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||| ||| | || || ||||| || ||||| || || ||||| ||| | |||||
Sbjct: 152 ttttacctctggngattaactgggaacaagacatatcangagtggggatggaatatattt 211
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|||||||| |||||||||| ||| |||||||||||||||| || |||| ||||| ||
Sbjct: 212 naggcatttnagaagaactctcgcgtagaatctggatatgtaggcttgagggatgtcaat 271
Query: 1617 actggtgaaaaagacaacatgatgca 1642
|| |||| |||||||||| ||||||
Sbjct: 272 acaggtgctaaagacaacangatgca 297
>gb|BP814291.1|BP814291 BP814291 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-35-D15 5',
mRNA sequence
Length = 379
Score = 91.7 bits (46), Expect = 5e-016
Identities = 148/182 (81%)
Strand = Plus / Plus
Query: 1560 gcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacact 1619
||||||||||||||||| |||||||| ||||||||||| || ||| ||||| || ||
Sbjct: 26 gcatttgagaagaactcgcgcatagagtctggatatgttggtttgaaggatgttaataca 85
Query: 1620 ggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtac 1679
|| | || ||||||| |||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 86 ggcgttaaggacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctat 145
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||| ||||| || || ||||||| | || ||||||||||| ||||| || ||||||
Sbjct: 146 ctactcttctcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagct 205
Query: 1740 ca 1741
||
Sbjct: 206 ca 207
>gb|AV799767.1|AV799767 AV799767 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-21-G09 3', mRNA
sequence
Length = 412
Score = 87.7 bits (44), Expect = 8e-015
Identities = 170/212 (80%)
Strand = Plus / Minus
Query: 1527 acataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcatagaa 1586
||||| ||||| ||||| ||| | ||||| || ||||||||||||||||| ||| |||||
Sbjct: 408 acatatcaagagtggggatggaatatatttcaagcatttgagaagaactctcgcgtagaa 349
Query: 1587 tctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagt 1646
||||||||||| || ||| ||||| || || |||| |||||||||| |||||| ||
Sbjct: 348 tctggatatgtaggcttgaaggatgtcaatacaggtgctaaagacaacaagatgcaaagc 289
Query: 1647 ttcttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcagtcata 1706
|||||| | || ||||| || ||||| || || || || || || ||| |||| || ||
Sbjct: 288 ttcttcttagctgagactcttaagtatctatatcttctcttttcgccttcatctgttatt 229
Query: 1707 tccttcgacgagtgggttttcaatactgaagc 1738
|| || ||||||||||||||||| || |||||
Sbjct: 228 tcattagacgagtgggttttcaacacagaagc 197
>gb|AV791592.1|AV791592 AV791592 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-11-C17 3', mRNA
sequence
Length = 444
Score = 83.8 bits (42), Expect = 1e-013
Identities = 148/182 (81%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 1560 gcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacact 1619
||||||||||||| ||| |||||||| ||||||||||| || ||| ||||| || ||
Sbjct: 421 gcatttgagaaga-ctcgcgcatagagtctggatatgttggtttgaaggatgttaataca 363
Query: 1620 ggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtac 1679
|| | || ||||||| |||||| ||||||||||| |||||||| || ||||| || ||
Sbjct: 362 ggcgttaaggacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctat 303
Query: 1680 ctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagct 1739
||||| |||||||| || ||||||| | || ||||||||||| ||||| || ||||||
Sbjct: 302 ctactcttctccccgacaacagtcattcctttagacgagtgggtattcaacaccgaagct 243
Query: 1740 ca 1741
||
Sbjct: 242 ca 241
>gb|AV810727.1|AV810727 AV810727 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-65-C03 3', mRNA
sequence
Length = 423
Score = 79.8 bits (40), Expect = 2e-012
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 1551 atattccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagat 1610
||||| || ||||||||||||||||| ||| |||||||||||||||| || ||| |||
Sbjct: 417 atatttcaagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggat 358
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
|| || || |||| |||||||||| |||||| || |||||| | || ||||| || |||
Sbjct: 357 gtcaatacaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaag 298
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
|| || || || || || || ||| |||| || || || || |||||||||||||||||
Sbjct: 297 tatctatatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaac 238
Query: 1731 actgaagc 1738
|| |||||
Sbjct: 237 acagaagc 230
>gb|AV816885.1|AV816885 AV816885 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-92-G10 3', mRNA
sequence
Length = 419
Score = 79.8 bits (40), Expect = 2e-012
Identities = 151/188 (80%)
Strand = Plus / Minus
Query: 1551 atattccaggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagat 1610
||||| || ||||||||||||||||| ||| |||||||||||||||| || ||| |||
Sbjct: 417 atatttcaagcatttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggat 358
Query: 1611 gtgaacactggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaag 1670
|| || || |||| |||||||||| |||||| || |||||| | || ||||| || |||
Sbjct: 357 gtcaatacaggtgctaaagacaacaagatgcaaagcttcttcttagctgagactcttaag 298
Query: 1671 tacctgtacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaat 1730
|| || || || || || || ||| |||| || || || || |||||||||||||||||
Sbjct: 297 tatctatatcttctcttttcgccttcatctgttatttcattagacgagtgggttttcaac 238
Query: 1731 actgaagc 1738
|| |||||
Sbjct: 237 acagaagc 230
>gb|BP589081.1|BP589081 BP589081 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-48-J02 3',
mRNA sequence
Length = 411
Score = 69.9 bits (35), Expect = 2e-009
Identities = 140/175 (80%)
Strand = Plus / Minus
Query: 1564 ttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaacactggtg 1623
||||||||||||| ||| |||||||||||||||| || ||| ||||| || || ||||
Sbjct: 411 ttgagaagaactctcgcgtagaatctggatatgtaggcttgaaggatgtcaatacaggtg 352
Query: 1624 aaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctac 1683
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || |
Sbjct: 351 ctaaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttc 292
Query: 1684 ttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
| || || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 291 tcttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 237
>gb|CW795315.1|CW795315 WiscDsLox432B01 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 883
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 1629 gacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttc 1688
||||||| |||||| ||||||||||| |||||||| || ||||| || || ||||| |||
Sbjct: 420 gacaacaagatgcaaagtttcttccttgcagagacactcaagtatctctatctactcttc 361
Query: 1689 tcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagctca 1741
|| || || ||||||| | || ||||||||||| ||||| || ||||||||
Sbjct: 360 tcgccgacaacagtcattcctttagacgagtgggtattcaacaccgaagctca 308
>gb|BX840025.1|BX840025 BX840025 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH12ZF08 5PRIM,
mRNA sequence
Length = 956
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 443 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 502
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 503 gatgagcttcagcc 516
>gb|BP562231.1|BP562231 BP562231 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-65-C03 5',
mRNA sequence
Length = 574
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||| |
Sbjct: 473 aaagtaaaagaggcaatgatccatgcttggagctcttatgaaaagtatgcatgggggaaa 532
Query: 507 gacgagcttcagcc 520
|| |||||||||||
Sbjct: 533 gatgagcttcagcc 546
>gb|BP642058.1|BP642058 BP642058 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-57-F20 3',
mRNA sequence
Length = 511
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1561 catttgagaagaactcccgcatagaatctggatatgt 1597
|||||||||||||||| ||| ||||||||| ||||||
Sbjct: 510 catttgagaagaactctcgcttagaatctgaatatgt 474
>gb|BP786800.1|BP786800 BP786800 RAFL7 Arabidopsis thaliana cDNA clone RAFL26-01-M04 3', mRNA
sequence
Length = 425
Score = 50.1 bits (25), Expect = 0.002
Identities = 124/157 (78%)
Strand = Plus / Minus
Query: 1582 tagaatctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgc 1641
|||||||||||||||| || ||| ||||| || || |||| |||||||||| |||||
Sbjct: 419 tagaatctggatatgtaggcttgaaggatgtcaatacaggtgctaaagacaacaagatgc 360
Query: 1642 agagtttcttcctggcagagacgctgaagtacctgtacctacttttctcccctccatcag 1701
| || |||||| | || ||||| || ||||| || || || || || || ||| |||| |
Sbjct: 359 aaagcttcttcttagctgagactcttaagtatctatatcttctcttttcgccttcatctg 300
Query: 1702 tcatatccttcgacgagtgggttttcaatactgaagc 1738
| || || || ||||||||||||||||| || |||||
Sbjct: 299 ttatttcattagacgagtgggttttcaacacagaagc 263
>gb|BX841199.1|BX841199 BX841199 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB30ZE04 5PRIM, mRNA sequence
Length = 897
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1062 acatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||||| |||||||| ||||| || || |||||||||||
Sbjct: 161 acatttggtgccatgggagatagcttttatgagtatttgctcaa 204
>gb|CL508709.1|CL508709 SAIL_802_C04.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_802_C04.v2, DNA sequence
Length = 921
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1081 acagcttctacgaatatttgctcaa 1105
||||||| |||||||||||||||||
Sbjct: 373 acagcttttacgaatatttgctcaa 397
>gb|AV562216.1|AV562216 AV562216 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ166b10F 3', mRNA sequence
Length = 363
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 341 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 282
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 281 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 229
>gb|BP604115.1|BP604115 BP604115 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-61-F17 3',
mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 375 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 316
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 315 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 263
>gb|BP793040.1|BP793040 BP793040 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-54-J05 3', mRNA
sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.41
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 1626 aaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgtacctactt 1685
|||||||||| |||||| || |||||| | || ||||| || ||||| || || || ||
Sbjct: 375 aaagacaacaagatgcaaagcttcttcttagctgagactcttaagtatctatatcttctc 316
Query: 1686 ttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaagc 1738
|| || ||| |||| || || || || ||||||||||||||||| || |||||
Sbjct: 315 ttttcgccttcatctgttatttcattagacgagtgggttttcaacacagaagc 263
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,169,644
Number of Sequences: 1013581
Number of extensions: 1169644
Number of successful extensions: 91287
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 88886
Number of HSP's gapped (non-prelim): 2386
length of query: 2249
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2228
effective length of database: 887,655,671
effective search space: 1977696834988
effective search space used: 1977696834988
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)