BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flower... 60 4e-007
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 60 4e-007
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 60 4e-007
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 60 4e-007
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 60 4e-007
dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alph... 60 4e-007
dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alph... 60 4e-007
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 60 4e-007
gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana c... 54 2e-005
gb|BP837657.1|BP837657 BP837657 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 40 0.37
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.37
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.37
>gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 3PRIM, mRNA sequence
Length = 1096
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 692 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 633
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 632 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 573
Query: 148 tc 149
||
Sbjct: 572 tc 571
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 1524 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 1583
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 1584 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 1643
Query: 148 tc 149
||
Sbjct: 1644 tc 1645
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 1450 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 1509
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 1510 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 1569
Query: 148 tc 149
||
Sbjct: 1570 tc 1571
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 1658 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgacatggcaagttat 1717
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 1718 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 1777
Query: 148 tc 149
||
Sbjct: 1778 tc 1779
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 1699 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 1758
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 1759 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 1818
Query: 148 tc 149
||
Sbjct: 1819 tc 1820
>dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL22-21-H07
Length = 993
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 257 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 316
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 317 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 376
Query: 148 tc 149
||
Sbjct: 377 tc 378
>dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL24-02-J05
Length = 1328
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 592 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 651
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 652 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 711
Query: 148 tc 149
||
Sbjct: 712 tc 713
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 60.0 bits (30), Expect = 4e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 1697 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 1756
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||
Sbjct: 1757 gctccactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaac 1816
Query: 148 tc 149
||
Sbjct: 1817 tc 1818
>gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182B24T7, mRNA
sequence
Length = 481
Score = 54.0 bits (27), Expect = 2e-005
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
|||||||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |
Sbjct: 25 gaagctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttat 84
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
||||||||| |||| ||| ||| | | |||||||||| ||||| |||||||| |||
Sbjct: 85 gctccactctttgtgaacacaaatnatagacggtggaaccctgatgcaatagtcttcaac 144
Query: 148 tc 149
||
Sbjct: 145 tc 146
>gb|BP837657.1|BP837657 BP837657 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-21-H07 5',
mRNA sequence
Length = 379
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 32 ctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgtgctc 91
|||| ||||||||||| | |||| ||| || ||| | ||||| |||||||||| |||||
Sbjct: 259 ctgcgtttctcattggtcttgaaaagaatagtgacattgttgaaatggcaagttatgctc 318
Query: 92 cactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaactc 149
||||| |||| ||| ||||| | |||||||||| ||||| |||||||| |||||
Sbjct: 319 cactctttgtgaacacaaatgatagacggtggaaccctgatgcaatagtcttcaactc 376
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 118 aggtggaacccagatgctatagtctttaactc 149
||||||||||| ||||| |||||||| |||||
Sbjct: 54723 aggtggaaccctgatgcaatagtcttcaactc 54754
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 118 aggtggaacccagatgctatagtctttaactc 149
||||||||||| ||||| |||||||| |||||
Sbjct: 3386730 aggtggaaccctgatgcaatagtcttcaactc 3386761
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactc 149
||||||||||| ||||| |||||||| |||||
Sbjct: 3361690 aggtggaaccctgatgcaatagtcttcaactc 3361659
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 240,347
Number of Sequences: 1013581
Number of extensions: 240347
Number of successful extensions: 15522
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15287
Number of HSP's gapped (non-prelim): 235
length of query: 526
length of database: 908,940,872
effective HSP length: 20
effective length of query: 506
effective length of database: 888,669,252
effective search space: 449666641512
effective search space used: 449666641512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)