BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 180 2e-043
emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome ... 180 2e-043
ref|NM_121697.3| Arabidopsis thaliana ATCSLD2; cellulose sy... 180 2e-043
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 180 2e-043
gb|AF232907.1|AF232907 Arabidopsis thaliana cellulose synth... 151 2e-034
gb|AF360180.1| Arabidopsis thaliana putative cellulose synt... 151 2e-034
gb|AY039996.1| Arabidopsis thaliana putative cellulose synt... 151 2e-034
emb|AJ297948.1|ATH297948 Arabidopsis thaliana CSLD3 gene fo... 151 2e-034
gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome II... 151 2e-034
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 151 2e-034
ref|NM_111175.2| Arabidopsis thaliana CSLD3 (CELLULOSE SYNT... 151 2e-034
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 151 2e-034
gb|BT005743.1| Arabidopsis thaliana clone RAFL15-50-B21 (R5... 117 2e-024
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 117 2e-024
emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome... 117 2e-024
emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosom... 117 2e-024
ref|NM_119980.2| Arabidopsis thaliana ATCSLD4; cellulose sy... 117 2e-024
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 117 2e-024
gb|CW794294.1|CW794294 WiscDsLox359F04 Arabidopsis thaliana... 107 2e-021
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 101 1e-019
gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16... 101 1e-019
gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BA... 101 1e-019
ref|NM_100153.2| Arabidopsis thaliana ATCSLD5; cellulose sy... 101 1e-019
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 101 1e-019
gb|AV530048.1|AV530048 AV530048 Arabidopsis thaliana aboveg... 90 6e-016
gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I... 62 1e-007
dbj|AK175868.1| Arabidopsis thaliana mRNA for putative cell... 62 1e-007
ref|NM_128870.3| Arabidopsis thaliana ATCSLD1; cellulose sy... 62 1e-007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 62 1e-007
emb|AL766878.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
gb|AA042439.1|AA042439 24744 CD4-16 Arabidopsis thaliana cD... 54 3e-005
gb|BH633811.1|BH633811 SALK_043260 Arabidopsis thaliana TDN... 46 0.007
gb|CW843228.1|CW843228 ET13507.Ds3.07.23.2003.jx19.666 Arab... 46 0.007
gb|AF088917.1|AF088917 Arabidopsis thaliana cellulose synth... 46 0.007
gb|AY139754.1| Arabidopsis thaliana AT5g17420/T10B6_80 mRNA... 46 0.007
gb|BT004543.1| Arabidopsis thaliana AT5g17420/T10B6_80 gene... 46 0.007
gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BA... 46 0.007
ref|NM_102951.1| Arabidopsis thaliana ATCSLD6; cellulose sy... 46 0.007
ref|NM_121748.2| Arabidopsis thaliana IRX3 (IRREGULAR XYLEM... 46 0.007
emb|CR399547.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.029
emb|CR399548.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.029
gb|AF091713.1|AF091713 Arabidopsis thaliana cellulose synth... 44 0.029
gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B... 44 0.029
emb|AL391142.1|ATT10B6 Arabidopsis thaliana DNA chromosome ... 44 0.029
ref|NM_128111.2| Arabidopsis thaliana CESA10 (CELLULASE SYN... 44 0.029
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 180 bits (91), Expect = 2e-043
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| |||||||||||||||||||| |||||||| || || || ||| |
Sbjct: 5325896 tttgtctctactgcggatccggagaaagaacctcctctggtcactgctaataccatttta 5325955
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| || |||||||| || || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 5325956 tctattcttgctgcggaatatcctgttgagaagctttcttgctatgtatctgatgatgga 5326015
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
||||| || || || |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 5326016 ggggcgcttcttacgtttgaagcaatggctgaagctgctagctttgccaacatttgggtt 5326075
Query: 455 cctttctgtcg 465
||||| |||||
Sbjct: 5326076 cctttttgtcg 5326086
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 5492072 tatgaggagttcaaggtcaggatcaa 5492047
>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project)
Length = 98101
Score = 180 bits (91), Expect = 2e-043
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| |||||||||||||||||||| |||||||| || || || ||| |
Sbjct: 20014 tttgtctctactgcggatccggagaaagaacctcctctggtcactgctaataccatttta 20073
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| || |||||||| || || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 20074 tctattcttgctgcggaatatcctgttgagaagctttcttgctatgtatctgatgatgga 20133
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
||||| || || || |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 20134 ggggcgcttcttacgtttgaagcaatggctgaagctgctagctttgccaacatttgggtt 20193
Query: 455 cctttctgtcg 465
||||| |||||
Sbjct: 20194 cctttttgtcg 20204
>ref|NM_121697.3| Arabidopsis thaliana ATCSLD2; cellulose synthase/ transferase,
transferring glycosyl groups AT5G16910 (ATCSLD2) mRNA,
complete cds
Length = 3728
Score = 180 bits (91), Expect = 2e-043
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| |||||||||||||||||||| |||||||| || || || ||| |
Sbjct: 1150 tttgtctctactgcggatccggagaaagaacctcctctggtcactgctaataccatttta 1209
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| || |||||||| || || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1210 tctattcttgctgcggaatatcctgttgagaagctttcttgctatgtatctgatgatgga 1269
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
||||| || || || |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 1270 ggggcgcttcttacgtttgaagcaatggctgaagctgctagctttgccaacatttgggtt 1329
Query: 455 cctttctgtcg 465
||||| |||||
Sbjct: 1330 cctttttgtcg 1340
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 180 bits (91), Expect = 2e-043
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| |||||||||||||||||||| |||||||| || || || ||| |
Sbjct: 5562923 tttgtctctactgcggatccggagaaagaacctcctctggtcactgctaataccatttta 5562982
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| || |||||||| || || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 5562983 tctattcttgctgcggaatatcctgttgagaagctttcttgctatgtatctgatgatgga 5563042
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
||||| || || || |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct: 5563043 ggggcgcttcttacgtttgaagcaatggctgaagctgctagctttgccaacatttgggtt 5563102
Query: 455 cctttctgtcg 465
||||| |||||
Sbjct: 5563103 cctttttgtcg 5563113
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 5739099 tatgaggagttcaaggtcaggatcaa 5739074
>gb|AF232907.1|AF232907 Arabidopsis thaliana cellulose synthase-like CSLD3 (CslD3) mRNA,
complete cds
Length = 3827
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 1374 ccaggactcgatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 1433
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 1434 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 1493
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 1494 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 1553
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 1554 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 1597
>gb|AF360180.1| Arabidopsis thaliana putative cellulose synthase catalytic subunit
(At3g03050) mRNA, complete cds
Length = 3962
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 1378 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 1437
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 1438 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 1497
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 1498 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 1557
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 1558 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 1601
>gb|AY039996.1| Arabidopsis thaliana putative cellulose synthase catalytic subunit
(At3g03050) mRNA, complete cds
Length = 3438
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 1126 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 1185
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 1186 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 1245
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 1246 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 1305
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 1306 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 1349
>emb|AJ297948.1|ATH297948 Arabidopsis thaliana CSLD3 gene for cellulose synthase-like protein,
exons 1-3
Length = 5385
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 2409 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 2468
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 2469 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 2528
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 2529 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 2588
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 2589 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 2632
>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence,
complete sequence
Length = 96540
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Minus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 91680 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 91621
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 91620 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 91561
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 91560 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 91501
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 91500 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 91457
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Minus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 775905 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 775846
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 775845 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 775786
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 775785 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 775726
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 775725 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 775682
>ref|NM_111175.2| Arabidopsis thaliana CSLD3 (CELLULOSE SYNTHASE-LIKE 3); cellulose
synthase/ transferase, transferring glycosyl groups
AT3G03050 (CSLD3) mRNA, complete cds
Length = 4206
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 1625 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 1684
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 1685 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 1744
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 1745 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 1804
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 1805 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 1848
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 151 bits (76), Expect = 2e-034
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 260 ccagggcttgatatatttgtatctactgctgatccggagaaagaacctccactggtcaca 319
||||| || ||||| ||||||||||| || ||||| |||||||||||||| || |||||
Sbjct: 689083 ccaggactggatatgtttgtatctacagcagatccagagaaagaacctcctcttgtcact 689142
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
| ||||| ||| | || || || ||||||||||||||||| || |||||| ||||||||
Sbjct: 689143 tccaacaccattttatcgattctcgctgctgactaccctgtagaaaagcttgcttgctat 689202
Query: 380 gtttctgatgatggaggggctctcctgacttttgaagccatggctgaagctgctagcttt 439
|| || ||||||||||| || || |||| || ||||||||||||||||| || || |||
Sbjct: 689203 gtatcagatgatggaggagcgcttttgacattcgaagccatggctgaagcagcgagtttt 689262
Query: 440 gctaatatgtgggttcctttctgtcgcaagcacaacattgagcc 483
|| || |||||||||||||||||||| || ||||| || |||||
Sbjct: 689263 gcaaacatgtgggttcctttctgtcgtaaacacaatatcgagcc 689306
>gb|BT005743.1| Arabidopsis thaliana clone RAFL15-50-B21 (R50044) unknown protein
(At4g38190) mRNA, partial cds
Length = 3414
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Plus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 975 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 1034
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 1035 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 1094
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 1095 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 1154
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 1155 cataacattgagcctcgaaatcc 1177
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 1230 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 1289
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 1290 aacggcctccctgactcaatacg 1312
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 13825239 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 13825180
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 13825179 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 13825120
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 13825119 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 13825060
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 13825059 cataacattgagcctcgaaatcc 13825037
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 13824984 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 13824925
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 13824924 aacggcctccctgactcaatacg 13824902
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project)
Length = 147215
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 100468 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 100409
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 100408 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 100349
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 100348 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 100289
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 100288 cataacattgagcctcgaaatcc 100266
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 100213 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 100154
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 100153 aacggcctccctgactcaatacg 100131
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
Length = 199789
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 21390 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 21331
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 21330 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 21271
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 21270 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 21211
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 21210 cataacattgagcctcgaaatcc 21188
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 21135 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 21076
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 21075 aacggcctccctgactcaatacg 21053
>ref|NM_119980.2| Arabidopsis thaliana ATCSLD4; cellulose synthase/ transferase,
transferring glycosyl groups AT4G38190 (ATCSLD4) mRNA,
complete cds
Length = 3513
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Plus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 1090 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 1149
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 1150 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 1209
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 1210 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 1269
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 1270 cataacattgagcctcgaaatcc 1292
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 1345 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 1404
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 1405 aacggcctccctgactcaatacg 1427
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 117 bits (59), Expect = 2e-024
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 290 gatccggagaaagaacctccactggtcacagcaaacactattctgtccatccttgctgct 349
||||| |||||||| || || || ||||| || ||||| ||||||||||| | || | |
Sbjct: 17912444 gatccagagaaagagccgccccttgtcaccgccaacacgattctgtccatattggccgtt 17912385
Query: 350 gactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgact 409
|| || || ||||||||| | || |||||| |||||||||||||||| ||||| || |
Sbjct: 17912384 gattatccggtggagaaggtgtcatgctatctttctgatgatggaggagctcttctatcc 17912325
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgtcgcaag 469
|||||||| ||||| ||||||||||||||||| || | ||||| ||||| ||||||||
Sbjct: 17912324 tttgaagctatggcagaagctgctagctttgcggatctctgggtacctttttgtcgcaaa 17912265
Query: 470 cacaacattgagcctcgcaatcc 492
|| |||||||||||||| |||||
Sbjct: 17912264 cataacattgagcctcgaaatcc 17912242
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 17912189 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 17912130
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 17912129 aacggcctccctgactcaatacg 17912107
>gb|CW794294.1|CW794294 WiscDsLox359F04 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 928
Score = 107 bits (54), Expect = 2e-021
Identities = 118/140 (84%)
Strand = Plus / Minus
Query: 344 gctgctgactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctc 403
||||||||||||||||| || |||||| |||||||||| || ||||||||||| || ||
Sbjct: 561 gctgctgactaccctgtagaaaagcttgcttgctatgtatcagatgatggaggagcgctt 502
Query: 404 ctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgt 463
|| | || ||| ||||||||||||| || || ||||| || ||||||||||||||||||
Sbjct: 501 ttgncattcgaanccatggctgaagcagcgagttttgcaaacatgtgggttcctttctgt 442
Query: 464 cgcaagcacaacattgagcc 483
|| || ||||| || |||||
Sbjct: 441 cgtaaacacaatatcgagcc 422
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| || || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 597182 tttgtctcaactgcagaccctgagaaagaaccacctctggtcacagccaacaccattctc 597123
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||||| ||| |||||||||||||| ||| ||||||| | || || ||||||
Sbjct: 597122 tcgatccttgctgttgattaccctgtggagaaacttgcttgctacttgtcagacgatgga 597063
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||| | || || ||||||||| ||||| || | |||||||||||
Sbjct: 597062 ggagctttgctaacatttgaagccttggctcaaacagctagctttgc 597016
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcc 456
|||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 11597553 tttgaagcaattgctgaagcggctagctttgcgaaaatatgggttcc 11597507
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete
sequence
Length = 100239
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| || || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 95354 tttgtctcaactgcagaccctgagaaagaaccacctctggtcacagccaacaccattctc 95413
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||||| ||| |||||||||||||| ||| ||||||| | || || ||||||
Sbjct: 95414 tcgatccttgctgttgattaccctgtggagaaacttgcttgctacttgtcagacgatgga 95473
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||| | || || ||||||||| ||||| || | |||||||||||
Sbjct: 95474 ggagctttgctaacatttgaagccttggctcaaacagctagctttgc 95520
>gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete
sequence
Length = 121668
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| || || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 20715 tttgtctcaactgcagaccctgagaaagaaccacctctggtcacagccaacaccattctc 20774
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||||| ||| |||||||||||||| ||| ||||||| | || || ||||||
Sbjct: 20775 tcgatccttgctgttgattaccctgtggagaaacttgcttgctacttgtcagacgatgga 20834
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||| | || || ||||||||| ||||| || | |||||||||||
Sbjct: 20835 ggagctttgctaacatttgaagccttggctcaaacagctagctttgc 20881
>ref|NM_100153.2| Arabidopsis thaliana ATCSLD5; cellulose synthase AT1G02730 (ATCSLD5)
mRNA, complete cds
Length = 3837
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| || || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 1397 tttgtctcaactgcagaccctgagaaagaaccacctctggtcacagccaacaccattctc 1456
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||||| ||| |||||||||||||| ||| ||||||| | || || ||||||
Sbjct: 1457 tcgatccttgctgttgattaccctgtggagaaacttgcttgctacttgtcagacgatgga 1516
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||| | || || ||||||||| ||||| || | |||||||||||
Sbjct: 1517 ggagctttgctaacatttgaagccttggctcaaacagctagctttgc 1563
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| || || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 597123 tttgtctcaactgcagaccctgagaaagaaccacctctggtcacagccaacaccattctc 597064
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||||| ||| |||||||||||||| ||| ||||||| | || || ||||||
Sbjct: 597063 tcgatccttgctgttgattaccctgtggagaaacttgcttgctacttgtcagacgatgga 597004
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||| | || || ||||||||| ||||| || | |||||||||||
Sbjct: 597003 ggagctttgctaacatttgaagccttggctcaaacagctagctttgc 596957
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcc 456
|||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 11588753 tttgaagcaattgctgaagcggctagctttgcgaaaatatgggttcc 11588707
>gb|AV530048.1|AV530048 AV530048 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL57a09R 5', mRNA
sequence
Length = 358
Score = 89.7 bits (45), Expect = 6e-016
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| |||||||||||||||||||| |||||||| || || || ||| |
Sbjct: 254 tttgtctctactgcggatccggagaaagaacctcctctggtcactgctaataccatttta 313
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctat 379
|| || |||||||| || || ||||| ||||||||||||||||||
Sbjct: 314 tctattcttgctgcggaatatcctgttgagaagctttcttgctat 358
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
sequence
Length = 93158
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtct 612
||||||||||| |||||||||||||||||||||||
Sbjct: 61719 gagtatgacgaattcaaggtcaggatcaatggtct 61753
>dbj|AK175868.1| Arabidopsis thaliana mRNA for putative cellulose synthase, partial
cds, clone: RAFL22-49-F01
Length = 2586
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtct 612
||||||||||| |||||||||||||||||||||||
Sbjct: 467 gagtatgacgaattcaaggtcaggatcaatggtct 501
>ref|NM_128870.3| Arabidopsis thaliana ATCSLD1; cellulose synthase/ transferase,
transferring glycosyl groups AT2G33100 (ATCSLD1) mRNA,
complete cds
Length = 3286
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtct 612
||||||||||| |||||||||||||||||||||||
Sbjct: 1111 gagtatgacgaattcaaggtcaggatcaatggtct 1145
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtct 612
||||||||||| |||||||||||||||||||||||
Sbjct: 14045818 gagtatgacgaattcaaggtcaggatcaatggtct 14045784
Score = 44.1 bits (22), Expect = 0.029
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||| ||||| || || ||||||||||| |||| || |||||||||| ||||||||
Sbjct: 10877027 gaaagagcctcctcttgtaacagcaaacacagttctctcaatccttgctgtggactaccc 10876968
Query: 358 tgtgga 363
|||||
Sbjct: 10876967 agtgga 10876962
>emb|AL766878.1| Arabidopsis thaliana T-DNA flanking sequence GK-214D09-014139,
genomic survey sequence
Length = 296
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 545 gattttgtcaaggacaggaggagggtcaagagggagtatgacgagttcaaggtcaggatc 604
||||||||||||||||| || | | | |||||||||||||| || |||||||| | |||
Sbjct: 176 gattttgtcaaggacagaagaaagattaagagggagtatgatgaattcaaggttcgcatc 117
Query: 605 aatggtctgcctgactcgatacg 627
|| || || |||||||| |||||
Sbjct: 116 aacggcctccctgactcaatacg 94
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 449 tgggttcctttctgtcgcaagcacaacattgagcctcgcaatcc 492
||||| ||||| |||||||| || |||||||||||||| |||||
Sbjct: 272 tgggtacctttttgtcgcaaacataacattgagcctcgaaatcc 229
>gb|AA042439.1|AA042439 24744 CD4-16 Arabidopsis thaliana cDNA clone H10C11T7, mRNA
sequence
Length = 476
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctcc 309
||||| |||||||| ||||||||||||||||||||
Sbjct: 252 tttgtctctactgcggatccggagaaagaacctcc 286
>gb|BH633811.1|BH633811 SALK_043260 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_043260, DNA sequence
Length = 168
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 590 ttcaaggtcaggatcaatggtct 612
|||||||||||||||||||||||
Sbjct: 122 ttcaaggtcaggatcaatggtct 100
>gb|CW843228.1|CW843228 ET13507.Ds3.07.23.2003.jx19.666 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET13507, DNA sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcc 456
|||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 417 tttgaagcaattgctgaagcggctagctttgcgaaaatatgggttcc 463
>gb|AF088917.1|AF088917 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3)
mRNA, complete cds
Length = 3081
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaa 606
||||| || ||||| ||||||||||||||||||||
Sbjct: 1255 aagagagaatatgaggagttcaaggtcaggatcaa 1289
>gb|AY139754.1| Arabidopsis thaliana AT5g17420/T10B6_80 mRNA, complete cds
Length = 3355
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaa 606
||||| || ||||| ||||||||||||||||||||
Sbjct: 1300 aagagagaatatgaggagttcaaggtcaggatcaa 1334
>gb|BT004543.1| Arabidopsis thaliana AT5g17420/T10B6_80 gene, complete cds
Length = 3081
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaa 606
||||| || ||||| ||||||||||||||||||||
Sbjct: 1255 aagagagaatatgaggagttcaaggtcaggatcaa 1289
>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
sequence
Length = 90132
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcc 456
|||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 37386 tttgaagcaattgctgaagcggctagctttgcgaaaatatgggttcc 37432
>ref|NM_102951.1| Arabidopsis thaliana ATCSLD6; cellulose synthase/ transferase,
transferring glycosyl groups AT1G32180 (ATCSLD6) mRNA,
complete cds
Length = 2940
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 410 tttgaagccatggctgaagctgctagctttgctaatatgtgggttcc 456
|||||||| || |||||||| ||||||||||| || || ||||||||
Sbjct: 760 tttgaagcaattgctgaagcggctagctttgcgaaaatatgggttcc 806
>ref|NM_121748.2| Arabidopsis thaliana IRX3 (IRREGULAR XYLEM 3); cellulose synthase
AT5G17420 (IRX3) mRNA, complete cds
Length = 3693
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 572 aagagggagtatgacgagttcaaggtcaggatcaa 606
||||| || ||||| ||||||||||||||||||||
Sbjct: 1300 aagagagaatatgaggagttcaaggtcaggatcaa 1334
>emb|CR399547.1| Arabidopsis thaliana T-DNA flanking sequence GK-819B03-025608,
genomic survey sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 140 tatgaggagttcaaggtcaggatcaa 165
>emb|CR399548.1| Arabidopsis thaliana T-DNA flanking sequence GK-819B03-025639,
genomic survey sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 142 tatgaggagttcaaggtcaggatcaa 167
>gb|AF091713.1|AF091713 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3)
gene, complete cds
Length = 7234
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 2402 tatgaggagttcaaggtcaggatcaa 2427
>gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B15 map mi238, complete
sequence
Length = 88770
Score = 44.1 bits (22), Expect = 0.029
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||| ||||| || || ||||||||||| |||| || |||||||||| ||||||||
Sbjct: 69165 gaaagagcctcctcttgtaacagcaaacacagttctctcaatccttgctgtggactaccc 69106
Query: 358 tgtgga 363
|||||
Sbjct: 69105 agtgga 69100
>emb|AL391142.1|ATT10B6 Arabidopsis thaliana DNA chromosome 5, BAC clone T10B6 (ESSA project)
Length = 33563
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 581 tatgacgagttcaaggtcaggatcaa 606
||||| ||||||||||||||||||||
Sbjct: 22901 tatgaggagttcaaggtcaggatcaa 22876
>ref|NM_128111.2| Arabidopsis thaliana CESA10 (CELLULASE SYNTHASE 10); transferase,
transferring glycosyl groups AT2G25540 (CESA10) mRNA,
complete cds
Length = 3446
Score = 44.1 bits (22), Expect = 0.029
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||| ||||| || || ||||||||||| |||| || |||||||||| ||||||||
Sbjct: 1053 gaaagagcctcctcttgtaacagcaaacacagttctctcaatccttgctgtggactaccc 1112
Query: 358 tgtgga 363
|||||
Sbjct: 1113 agtgga 1118
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 299,128
Number of Sequences: 1013581
Number of extensions: 299128
Number of successful extensions: 25748
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24421
Number of HSP's gapped (non-prelim): 1318
length of query: 644
length of database: 908,940,872
effective HSP length: 20
effective length of query: 624
effective length of database: 888,669,252
effective search space: 554529613248
effective search space used: 554529613248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)