BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ768944.1|BZ768944 SALK_141364.45.40.n Arabidopsis thal... 38 0.86
dbj|AB009053.1| Arabidopsis thaliana genomic DNA, chromosom... 38 0.86
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 38 0.86
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 38 0.86
emb|AL083117.1|CNS00OEN Arabidopsis thaliana genome survey ... 36 3.4
gb|CC797771.1|CC797771 SALK_145371.44.75.x Arabidopsis thal... 36 3.4
gb|CL464789.1|CL464789 SAIL_1229_D06.v1 SAIL Collection Ara... 36 3.4
emb|CR399799.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 3.4
gb|CW840303.1|CW840303 GT9791.Ds3.05.20.01.JU95.b.553 Arabi... 36 3.4
gb|AY199901.1|AY199901 AY199901 Arabidopsis thaliana Landsb... 36 3.4
gb|CB185526.1|CB185526 EST00059 Arabidopsis Salicylic Acid ... 36 3.4
gb|AV548624.1|AV548624 AV548624 Arabidopsis thaliana roots ... 36 3.4
gb|AV556858.1|AV556858 AV556858 Arabidopsis thaliana green ... 36 3.4
gb|BP783643.1|BP783643 BP783643 RAFL7 Arabidopsis thaliana ... 36 3.4
gb|BP842434.1|BP842434 BP842434 RAFL21 Arabidopsis thaliana... 36 3.4
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 36 3.4
gb|U95973.1|U95973 Arabidopsis thaliana chromosome 1 BAC T1... 36 3.4
gb|AC006954.8| Arabidopsis thaliana chromosome 2 clone F25P... 36 3.4
dbj|AB018115.1| Arabidopsis thaliana genomic DNA, chromosom... 36 3.4
dbj|AP001305.1| Arabidopsis thaliana genomic DNA, chromosom... 36 3.4
dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosom... 36 3.4
dbj|AP002046.1| Arabidopsis thaliana genomic DNA, chromosom... 36 3.4
emb|AJ583497.1| Arabidopsis thaliana mRNA for always early ... 36 3.4
dbj|AK176234.1| Arabidopsis thaliana mRNA, partial cds, clo... 36 3.4
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 36 3.4
gb|AY954799.1| Arabidopsis thaliana hypothetical protein (A... 36 3.4
emb|AL161667.1|ATF1I16 Arabidopsis thaliana DNA chromosome ... 36 3.4
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 36 3.4
dbj|AK221596.1| Arabidopsis thaliana mRNA for zinc transpor... 36 3.4
ref|NM_128014.1| Arabidopsis thaliana unknown protein AT2G2... 36 3.4
ref|NM_113038.1| Arabidopsis thaliana unknown protein AT3G2... 36 3.4
ref|NM_100972.3| Arabidopsis thaliana ZIP4 (ZRT, IRT-LIKE P... 36 3.4
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 36 3.4
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 36 3.4
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 36 3.4
>gb|BZ768944.1|BZ768944 SALK_141364.45.40.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_141364.45.40.n,
DNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 196 aagatgctgaggaaaagaa 214
|||||||||||||||||||
Sbjct: 108 aagatgctgaggaaaagaa 126
>dbj|AB009053.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2
Length = 78145
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 196 aagatgctgaggaaaagaa 214
|||||||||||||||||||
Sbjct: 21691 aagatgctgaggaaaagaa 21709
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 196 aagatgctgaggaaaagaa 214
|||||||||||||||||||
Sbjct: 22352368 aagatgctgaggaaaagaa 22352386
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 196 aagatgctgaggaaaagaa 214
|||||||||||||||||||
Sbjct: 25224281 aagatgctgaggaaaagaa 25224299
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 69 tatttttccattgattca 86
||||||||||||||||||
Sbjct: 21952653 tatttttccattgattca 21952636
>emb|AL083117.1|CNS00OEN Arabidopsis thaliana genome survey sequence T7 end of BAC F6D1 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 525
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 406 gctgaggaaaagaaagct 423
>gb|CC797771.1|CC797771 SALK_145371.44.75.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_145371.44.75.x,
DNA sequence
Length = 419
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 228 ttcatatttttgccttgattcatatg 253
>gb|CL464789.1|CL464789 SAIL_1229_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1229_D06.v1, DNA sequence
Length = 950
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 ccatatttcatatttttc 76
||||||||||||||||||
Sbjct: 240 ccatatttcatatttttc 257
>emb|CR399799.1| Arabidopsis thaliana T-DNA flanking sequence GK-827E12-025720,
genomic survey sequence
Length = 344
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 69 tatttttccattgattca 86
||||||||||||||||||
Sbjct: 292 tatttttccattgattca 309
>gb|CW840303.1|CW840303 GT9791.Ds3.05.20.01.JU95.b.553 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT9791, DNA sequence
Length = 553
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 199 atgctgaggaaaagaaagcttcattt 224
|||||| | |||||||||||||||||
Sbjct: 350 atgctgtgtaaaagaaagcttcattt 375
>gb|AY199901.1|AY199901 AY199901 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET7228.Ds5.02.16.2002.jw12.617, DNA
sequence
Length = 617
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 199 atgctgaggaaaagaaagcttcattt 224
|||||| | |||||||||||||||||
Sbjct: 17 atgctgtgtaaaagaaagcttcattt 42
>gb|CB185526.1|CB185526 EST00059 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-E12 similar to unknown protein,
mRNA sequence
Length = 579
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 415 atcatgatggttctaatt 398
>gb|AV548624.1|AV548624 AV548624 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL58c06F 3', mRNA sequence
Length = 295
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 57 ttcatatttttgccttgattcatatg 32
>gb|AV556858.1|AV556858 AV556858 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ054f03F 3', mRNA sequence
Length = 467
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28 gtggatcatctcagcaat 45
||||||||||||||||||
Sbjct: 309 gtggatcatctcagcaat 292
>gb|BP783643.1|BP783643 BP783643 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-87-H07 3',
mRNA sequence
Length = 415
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 51 ttcatatttttgccttgattcatatg 26
>gb|BP842434.1|BP842434 BP842434 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-54-M22 5',
mRNA sequence
Length = 384
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 251 atcatgatggttctaatt 268
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 3664966 ttcatatttttgccttgattcatatg 3664941
>gb|U95973.1|U95973 Arabidopsis thaliana chromosome 1 BAC T19D16 genomic sequence, complete
sequence
Length = 115641
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 62841 ttcatatttttgccttgattcatatg 62866
>gb|AC006954.8| Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete
sequence
Length = 93701
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 197 agatgctgaggaaaagaa 214
||||||||||||||||||
Sbjct: 82296 agatgctgaggaaaagaa 82279
>dbj|AB018115.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJP23
Length = 31827
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 69 tatttttccattgattca 86
||||||||||||||||||
Sbjct: 1325 tatttttccattgattca 1308
>dbj|AP001305.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9
Length = 58510
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 45284 gctgaggaaaagaaagct 45267
>dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23
Length = 70100
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 63849 atcatgatggttctaatt 63832
>dbj|AP002046.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMP21
Length = 18211
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 2844 atcatgatggttctaatt 2827
>emb|AJ583497.1| Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene)
Length = 3739
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 1405 gctgaggaaaagaaagct 1422
>dbj|AK176234.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL23-12-D12
Length = 1159
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 403 atcatgatggttctaatt 420
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 199 atgctgaggaaaagaaagcttcattt 224
|||||| | |||||||||||||||||
Sbjct: 21783232 atgctgtgtaaaagaaagcttcattt 21783257
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 ccatatttcatatttttc 76
||||||||||||||||||
Sbjct: 20608162 ccatatttcatatttttc 20608179
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 7815350 atcatgatggttctaatt 7815333
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 7806615 atcatgatggttctaatt 7806598
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 7501621 gctgaggaaaagaaagct 7501604
>gb|AY954799.1| Arabidopsis thaliana hypothetical protein (At2g24530) gene,
complete cds
Length = 1224
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 197 agatgctgaggaaaagaa 214
||||||||||||||||||
Sbjct: 815 agatgctgaggaaaagaa 832
>emb|AL161667.1|ATF1I16 Arabidopsis thaliana DNA chromosome 3, BAC clone F1I16
Length = 103785
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 ccatatttcatatttttc 76
||||||||||||||||||
Sbjct: 32796 ccatatttcatatttttc 32813
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 199 atgctgaggaaaagaaagcttcattt 224
|||||| | |||||||||||||||||
Sbjct: 37918 atgctgtgtaaaagaaagcttcattt 37943
>dbj|AK221596.1| Arabidopsis thaliana mRNA for zinc transporter like protein, complete
cds, clone: RAFL07-87-H07
Length = 1537
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 1477 ttcatatttttgccttgattcatatg 1502
>ref|NM_128014.1| Arabidopsis thaliana unknown protein AT2G24530 mRNA, complete cds
Length = 759
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 197 agatgctgaggaaaagaa 214
||||||||||||||||||
Sbjct: 350 agatgctgaggaaaagaa 367
>ref|NM_113038.1| Arabidopsis thaliana unknown protein AT3G21430 mRNA, complete cds
Length = 3058
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 682 gctgaggaaaagaaagct 699
>ref|NM_100972.3| Arabidopsis thaliana ZIP4 (ZRT, IRT-LIKE PROTEIN); cation transporter
AT1G10970 (ZIP4) mRNA, complete cds
Length = 1545
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 1489 ttcatatttttgccttgattcatatg 1514
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 197 agatgctgaggaaaagaa 214
||||||||||||||||||
Sbjct: 10430491 agatgctgaggaaaagaa 10430508
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 199 atgctgaggaaaagaaagcttcattt 224
|||||| | |||||||||||||||||
Sbjct: 21835664 atgctgtgtaaaagaaagcttcattt 21835689
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 ccatatttcatatttttc 76
||||||||||||||||||
Sbjct: 20655687 ccatatttcatatttttc 20655704
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 7864394 atcatgatggttctaatt 7864377
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 289 atcatgatggttctaatt 306
||||||||||||||||||
Sbjct: 7855299 atcatgatggttctaatt 7855282
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 201 gctgaggaaaagaaagct 218
||||||||||||||||||
Sbjct: 7549081 gctgaggaaaagaaagct 7549064
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 ttcatatttttccattgattcatatg 90
||||||||||| | ||||||||||||
Sbjct: 3665145 ttcatatttttgccttgattcatatg 3665120
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,786
Number of Sequences: 1013581
Number of extensions: 192786
Number of successful extensions: 15793
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14892
Number of HSP's gapped (non-prelim): 901
length of query: 315
length of database: 908,940,872
effective HSP length: 19
effective length of query: 296
effective length of database: 889,682,833
effective search space: 263346118568
effective search space used: 263346118568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)