BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.001
gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid... 48 0.001
emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid... 46 0.004
gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudo... 46 0.004
gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1)... 44 0.015
gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid ... 44 0.015
gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid ... 44 0.015
gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid ... 44 0.015
gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1)... 42 0.057
gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseud... 42 0.057
gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseud... 42 0.057
gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid ... 42 0.057
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 42 0.057
gb|BE662749.1|BE662749 EST00270 Arabidopsis Acute Ozone Rev... 40 0.23
gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid... 40 0.23
gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid ... 40 0.23
gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG... 40 0.23
gb|CF773912.1|CF773912 AG_FSL_24D10 Arabidopsis ag-1 35S:AG... 40 0.23
>emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequence GK-708G03-022965,
genomic survey sequence
Length = 436
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgcta 328
||||||||||||||||||||||||
Sbjct: 62 tgtacctcggccgcgaccacgcta 39
>gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA4-C7 similar to putative coatomer
complex subunit, has G-protein beta with WD-40 repeats,
mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 305 tgtacctcggccgcgaccacgcta 328
||||||||||||||||||||||||
Sbjct: 464 tgtacctcggccgcgaccacgcta 487
>emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequence GK-671F07-022932,
genomic survey sequence
Length = 108
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequence GK-712B10-022963,
genomic survey sequence
Length = 498
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 428 gtacctcggccgcgaccacgcta 450
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacg 325
||||||||||||||||||||
Sbjct: 68 gtacctcggccgcgaccacg 49
>gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-B11 similar to putative
UDP-glucose glucosyltransferase, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 526 gtacctcggccgcgaccacgcta 548
>gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-D1 similar to glucosyl
transferase, mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 365 gtacctcggccgcgaccacgcta 387
>gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G10 similar to putative
glutathione S-transferase, mRNA sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 64 gtacctcggccgcgaccacgcta 42
>gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC3-D6 similar
to UDP-glucosyl transferase, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 392 gtacctcggccgcgaccacgcta 414
>gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD07D05 similar to probable lipid transfer protein
T8F5.2, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgcta 328
||||||||||||||||||||||
Sbjct: 417 tacctcggccgcgaccacgcta 438
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgcta 328
||||||||||||||||||||||
Sbjct: 378 tacctcggccgcgaccacgcta 399
>gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-A9 similar to transcription
factor ZAP1, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgcta 328
||||||||||||||||||||||
Sbjct: 439 tacctcggccgcgaccacgcta 460
>gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-E10 similar to NADH
dehygrogenase-like protein, mRNA sequence
Length = 979
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgcta 328
||||||||||||||||||||||
Sbjct: 514 tacctcggccgcgaccacgcta 535
>gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-G7 similar to putative Tub
family protein, mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgcta 328
||||||||||||||||||||||
Sbjct: 357 tacctcggccgcgaccacgcta 378
>gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD08A02 similar to peroxidase precursor, mRNA sequence
Length = 163
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 139 acctcggccgcgaccacgcta 159
>gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-A5 similar
to nuclear matrix constituent protein 1, mRNA sequence
Length = 431
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 410 acctcggccgcgaccacgcta 430
>gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-C10 similar
to PR1 like protein, mRNA sequence
Length = 317
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 295 acctcggccgcgaccacgcta 315
>gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F1 similar to putative
indole-3-acetate beta-glucosyltransferase, mRNA sequence
Length = 239
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 219 acctcggccgcgaccacgcta 239
>gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F11 similar to glutathione
S-transferase, mRNA sequence
Length = 265
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 245 acctcggccgcgaccacgcta 265
>gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F3 similar to glucosyl
transferase, mRNA sequence
Length = 366
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 345 acctcggccgcgaccacgcta 365
>gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-H4 similar to putative protein,
mRNA sequence
Length = 289
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 269 acctcggccgcgaccacgcta 289
>gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-A11 similar to putative protein,
mRNA sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 262 acctcggccgcgaccacgcta 282
>gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-A2 similar to putative protein,
mRNA sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 262 acctcggccgcgaccacgcta 282
>gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G1 similar to
acyltransferase-like protein, mRNA sequence
Length = 264
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 244 acctcggccgcgaccacgcta 264
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-H5 similar
to WD repeat domain containing protein, mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 89 acctcggccgcgaccacgcta 69
>gb|BE662749.1|BE662749 EST00270 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHG1 similar to
cab-4 chlorophyll a/b-binding protein, mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccac 324
||||||||||||||||||||
Sbjct: 92 tgtacctcggccgcgaccac 73
>gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-E8 similar to putative
glutathione transferase, mRNA sequence
Length = 134
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 309 cctcggccgcgaccacgcta 328
||||||||||||||||||||
Sbjct: 115 cctcggccgcgaccacgcta 134
>gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-F2 similar to putative protein
similar to receptor-like protein kinase, mRNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 604 acctcggccgcgaccacgct 623
>gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D01, mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 309 cctcggccgcgaccacgcta 328
||||||||||||||||||||
Sbjct: 580 cctcggccgcgaccacgcta 599
>gb|CF773912.1|CF773912 AG_FSL_24D10 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 24D10, mRNA sequence
Length = 129
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 309 cctcggccgcgaccacgcta 328
||||||||||||||||||||
Sbjct: 30 cctcggccgcgaccacgcta 11
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,995
Number of Sequences: 1013581
Number of extensions: 96995
Number of successful extensions: 6499
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6465
Number of HSP's gapped (non-prelim): 34
length of query: 328
length of database: 908,940,872
effective HSP length: 19
effective length of query: 309
effective length of database: 889,682,833
effective search space: 274911995397
effective search space used: 274911995397
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)