BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 206 4e-051
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 80 6e-013
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 80 6e-013
gb|B74010.1|B74010 T27H15TF TAMU Arabidopsis thaliana genom... 60 5e-007
gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thalia... 60 5e-007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 50 5e-004
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 50 5e-004
emb|AX412747.1| Sequence 511 from Patent WO0222675 50 5e-004
emb|AX441264.1| Sequence 18 from Patent EP1209228 50 5e-004
emb|AX508002.1| Sequence 2697 from Patent WO0216655 50 5e-004
dbj|BD181338.1| A stress-responsive promoter 50 5e-004
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 50 5e-004
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 50 5e-004
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 50 5e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 5e-004
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 46 0.008
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 46 0.008
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 46 0.008
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 46 0.008
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 44 0.032
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.13
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 42 0.13
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 42 0.13
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 42 0.13
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 42 0.13
gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasi... 42 0.13
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 42 0.13
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 206 bits (104), Expect = 4e-051
Identities = 462/582 (79%)
Strand = Plus / Minus
Query: 17 gtacacaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacg 76
||||||||||||||| |||||||||| |||||| ||||| | || ||||| | || |
Sbjct: 4596 gtacacaatgccatattgaaacatgaaaaatctcaggctcaaaatagtctccaatatcct 4537
Query: 77 tcctctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtc 136
|||||| ||||| |||||||||||||| || || |||||||| || ||||||||| ||
Sbjct: 4536 tcctcttaatgtttggatatgcgcctgttcttcctcccaccacgactcccaactgagctc 4477
Query: 137 accctttacaccaactccacctttataaagtaaccagtttgtccagtcatcaaagtcctc 196
|||||||| || ||||||||||| || | | ||| | |||||| ||||| |||||
Sbjct: 4476 tccctttactcccactccacctttgtacataagccaactgacccagtcttcaaaatcctc 4417
Query: 197 aacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccagga 256
|||||||||||||| || || ||||| || ||||| || || || || || | ||||||
Sbjct: 4416 gacagtcttttgccattcaaatccagagggattgaagatatagggtgcaaacaaccagga 4357
Query: 257 cataacgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgt 316
|| || ||||||||||| |||||||| | || || || ||||| | ||| || | ||
Sbjct: 4356 tattacaaggaaccaactgctgatagttagcaaaacgaacgaagaggcacccccgtccgt 4297
Query: 317 gtatccatatgcaatgtaaacgatcaggaggagagcaacctcaagcgctttgacaaagtg 376
|| ||||| |||||||||| ||||| || ||||| || |||| ||||| ||||| ||
Sbjct: 4296 atacccataggcaatgtaaatgatcaacagtagagctacttcaaaagctttaacaaaatg 4237
Query: 377 acttcgagaatagagcctataattttcagcaaactttatgtgccgaacaacaaaacctct 436
||||| |||||| || || ||||| || ||||||||||||||| |||| |||||||||||
Sbjct: 4236 acttctagaataaagtctgtaattatcggcaaactttatgtgctgaaccacaaaacctct 4177
Query: 437 tccagtagcacgatactttgcaccgccatgaaggattgttctaccaaagtaatgtgtcct 496
||||| || |||||||||||||| || ||||| || || | ||||||||||| || ||
Sbjct: 4176 gccagttgctcgatactttgcaccaccgtgaagaatagtacgtccaaagtaatgagttct 4117
Query: 497 tgttccaagcgaaaaggtgaaaaacaccgaacagaactggagctgcattgtaataaaact 556
||| || || ||||| |||||||| || ||||| ||||||| ||||||||||| || ||
Sbjct: 4116 tgtcccgagagaaaatgtgaaaaagacagaacacaactggaattgcattgtaatgaagct 4057
Query: 557 aaaaacagccttcatcagccccagctnnagaatgaaacccat 598
|||| |||||| | || ||| || | || |||||||||||
Sbjct: 4056 gaaaatagcctttagcaacccaagttcaagtatgaaacccat 4015
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
sequence
Length = 134151
Score = 79.8 bits (40), Expect = 6e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| ||||| ||||||| |||||| || || ||||| || ||||||||||||||| |
Sbjct: 17476 cgctttaacaaaatgacttctagaataaagtctgtaattatcggcaaactttatgtgctg 17535
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||| ||||||||||| ||||| || |||||||
Sbjct: 17536 aaccacaaaacctctgccagttgctcgatact 17567
Score = 61.9 bits (31), Expect = 1e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 17 gtacacaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacg 76
||||||||||||||| |||||||||| |||||| ||||| | || ||||| | || |
Sbjct: 16833 gtacacaatgccatattgaaacatgaaaaatctcaggctcaaaatagtctccaatatcct 16892
Query: 77 tcctctgaatgtctggatatgcgcctg 103
|||||| ||||| ||||||||||||||
Sbjct: 16893 tcctcttaatgtttggatatgcgcctg 16919
Score = 56.0 bits (28), Expect = 9e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 480 ccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacaccgaacagaactggagc 539
||||||||||| || ||||| || || ||||| |||||||| || ||||| |||||||
Sbjct: 17688 ccaaagtaatgagttcttgtcccgagagaaaatgtgaaaaagacagaacacaactggaat 17747
Query: 540 tgcattgtaataaaactaaaaacagcct 567
||||||||||| || || |||| |||||
Sbjct: 17748 tgcattgtaatgaagctgaaaatagcct 17775
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 79.8 bits (40), Expect = 6e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| ||||| ||||||| |||||| || || ||||| || ||||||||||||||| |
Sbjct: 15463376 cgctttaacaaaatgacttctagaataaagtctgtaattatcggcaaactttatgtgctg 15463435
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||| ||||||||||| ||||| || |||||||
Sbjct: 15463436 aaccacaaaacctctgccagttgctcgatact 15463467
Score = 61.9 bits (31), Expect = 1e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 17 gtacacaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacg 76
||||||||||||||| |||||||||| |||||| ||||| | || ||||| | || |
Sbjct: 15462733 gtacacaatgccatattgaaacatgaaaaatctcaggctcaaaatagtctccaatatcct 15462792
Query: 77 tcctctgaatgtctggatatgcgcctg 103
|||||| ||||| ||||||||||||||
Sbjct: 15462793 tcctcttaatgtttggatatgcgcctg 15462819
Score = 56.0 bits (28), Expect = 9e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 480 ccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacaccgaacagaactggagc 539
||||||||||| || ||||| || || ||||| |||||||| || ||||| |||||||
Sbjct: 15463588 ccaaagtaatgagttcttgtcccgagagaaaatgtgaaaaagacagaacacaactggaat 15463647
Query: 540 tgcattgtaataaaactaaaaacagcct 567
||||||||||| || || |||| |||||
Sbjct: 15463648 tgcattgtaatgaagctgaaaatagcct 15463675
Score = 46.1 bits (23), Expect = 0.008
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||||||||||||||||||||| || |||||
Sbjct: 13606105 tcttttgccactcgaaaccagagggattgaa 13606075
>gb|B74010.1|B74010 T27H15TF TAMU Arabidopsis thaliana genomic clone T27H15, DNA
sequence
Length = 525
Score = 60.0 bits (30), Expect = 5e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 18 tacacaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgt 77
|||||||||||||| |||||||||| |||||| ||||| | || ||||| | || | |
Sbjct: 1 tacacaatgccatattgaaacatgaaaaatctcaggctcaaaatagtctccaatatcctt 60
Query: 78 cctctgaatgtctggatatgcgcctg 103
||||| ||||| ||||||||||||||
Sbjct: 61 cctcttaatgtttggatatgcgcctg 86
>gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thaliana cDNA clone YBY072 5'
similar to Rice cDNA partial sequence, mRNA sequence
Length = 324
Score = 60.0 bits (30), Expect = 5e-007
Identities = 162/207 (78%)
Strand = Plus / Minus
Query: 77 tcctctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtc 136
|||||| |||| |||||||||||||| || || |||||||| || ||||||||| ||
Sbjct: 292 tcctcttaatgnttggatatgcgcctgttcgtcctcccaccacgactcccaactgagctc 233
Query: 137 accctttacaccaactccacctttataaagtaaccagtttgtccagtcatcaaagtcctc 196
|||||||| || ||||||||||| || | | ||| | | |||| ||||| |||||
Sbjct: 232 tccctttactcccactccacctttgtacataagccaactgaccnagtcttcaaaatcctc 173
Query: 197 aacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccagga 256
|||||||||||||| || || ||||| || |||| || || || || || | ||||||
Sbjct: 172 gacagtcttttgccattcaaatccagagggantgaagatatagggtgcaaacaaccagga 113
Query: 257 cataacgaggaaccaactactgatagt 283
|| || ||||||||||| ||||||||
Sbjct: 112 tattacaaggaaccaactgctgatagt 86
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 1648720 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 1648764
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 1648899 acaaagtgactacgggaatagaacctatagttctcagcaaa 1648939
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 5158 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 5114
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 4979 acaaagtgactacgggaatagaacctatagttctcagcaaa 4939
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 4873 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 4829
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 4694 acaaagtgactacgggaatagaacctatagttctcagcaaa 4654
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 390 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 346
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 211 acaaagtgactacgggaatagaacctatagttctcagcaaa 171
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 4873 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 4829
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 4694 acaaagtgactacgggaatagaacctatagttctcagcaaa 4654
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 390 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 346
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 211 acaaagtgactacgggaatagaacctatagttctcagcaaa 171
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 30368 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 30412
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 30547 acaaagtgactacgggaatagaacctatagttctcagcaaa 30587
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 80917 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 80961
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 81096 acaaagtgactacgggaatagaacctatagttctcagcaaa 81136
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 5158 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 5114
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 4979 acaaagtgactacgggaatagaacctatagttctcagcaaa 4939
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 190 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 234
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 1648843 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 1648887
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaa 409
||||||||||| || ||||||| |||||| || ||||||||
Sbjct: 1649022 acaaagtgactacgggaatagaacctatagttctcagcaaa 1649062
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacaca 23
|||||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtacaca 167
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 46.1 bits (23), Expect = 0.008
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||||||||||||||||||||| || |||||
Sbjct: 90382 tcttttgccactcgaaaccagagggattgaa 90412
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 46.1 bits (23), Expect = 0.008
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||||||||||||||||||||| || |||||
Sbjct: 1554 tcttttgccactcgaaaccagagggattgaa 1524
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 46.1 bits (23), Expect = 0.008
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||||||||||||||||||||| || |||||
Sbjct: 5164 tcttttgccactcgaaaccagagggattgaa 5134
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacac 22
||||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtacac 245
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtaca 198
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtaca 238
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtaca 303
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtaca 34
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtaca 223
>gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BA9, mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtacac 22
|||||||||||||||||||||
Sbjct: 557 cggccgcccgggcaggtacac 537
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtaca 212
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 323,774
Number of Sequences: 1013581
Number of extensions: 323774
Number of successful extensions: 25891
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25193
Number of HSP's gapped (non-prelim): 693
length of query: 709
length of database: 908,940,872
effective HSP length: 20
effective length of query: 689
effective length of database: 888,669,252
effective search space: 612293114628
effective search space used: 612293114628
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)