BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE36e08.yg.2.1
         (352 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AB016885.1|  Arabidopsis thaliana genomic DNA, chromosom...    42   0.062
dbj|BA000015.5|  Arabidopsis thaliana DNA, chromosome 5, com...    42   0.062
ref|NM_125281.1|  Arabidopsis thaliana copper ion binding AT...    42   0.062
ref|NC_003076.4|  Arabidopsis thaliana chromosome 5, complet...    42   0.062

>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22
          Length = 77758

 Score = 42.1 bits (21), Expect = 0.062
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 215   cgccgggaagtcgtcggtgaacacgccgg 243
             |||||||||||||||||| || |||||||
Sbjct: 43109 cgccgggaagtcgtcggtaaatacgccgg 43137



>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
          Length = 23810767

 Score = 42.1 bits (21), Expect = 0.062
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 215      cgccgggaagtcgtcggtgaacacgccgg 243
                |||||||||||||||||| || |||||||
Sbjct: 21165496 cgccgggaagtcgtcggtaaatacgccgg 21165524



>ref|NM_125281.1| Arabidopsis thaliana copper ion binding AT5G58910 mRNA, complete cds
          Length = 1572

 Score = 42.1 bits (21), Expect = 0.062
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 215  cgccgggaagtcgtcggtgaacacgccgg 243
            |||||||||||||||||| || |||||||
Sbjct: 1122 cgccgggaagtcgtcggtaaatacgccgg 1094



>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
          Length = 26992728

 Score = 42.1 bits (21), Expect = 0.062
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 215      cgccgggaagtcgtcggtgaacacgccgg 243
                |||||||||||||||||| || |||||||
Sbjct: 23807409 cgccgggaagtcgtcggtaaatacgccgg 23807437



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,716
Number of Sequences: 1013581
Number of extensions: 51716
Number of successful extensions: 3339
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3314
Number of HSP's gapped (non-prelim): 25
length of query: 352
length of database: 908,940,872
effective HSP length: 19
effective length of query: 333
effective length of database: 889,682,833
effective search space: 296264383389
effective search space used: 296264383389
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)