BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE23e10.yg.3.1
(2083 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY140066.1| Arabidopsis thaliana ABC transporter homolog... 303 6e-080
gb|BT000946.1| Arabidopsis thaliana clone C105151 putative ... 303 6e-080
gb|BT008363.1| Arabidopsis thaliana At5g60790 gene, complet... 303 6e-080
gb|AY080833.1| Arabidopsis thaliana At5g60790 mRNA sequence 303 6e-080
ref|NM_125472.2| Arabidopsis thaliana ATGCN1 AT5G60790 (ATG... 303 6e-080
dbj|AB015472.1| Arabidopsis thaliana genomic DNA, chromosom... 214 5e-053
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 214 5e-053
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 214 5e-053
gb|CL504216.1|CL504216 SAIL_734_D11.v3 SAIL Collection Arab... 153 1e-034
gb|H37746.1|H37746 15875 Lambda-PRL2 Arabidopsis thaliana c... 125 3e-026
gb|AI995098.1|AI995098 701501783 A. thaliana, Ohio State cl... 123 1e-025
gb|AV530392.1|AV530392 AV530392 Arabidopsis thaliana flower... 86 3e-014
emb|CR402275.1| Arabidopsis thaliana T-DNA flanking sequenc... 78 7e-012
gb|W43226.1|W43226 22605 Lambda-PRL2 Arabidopsis thaliana c... 76 3e-011
emb|BX944814.1| Arabidopsis thaliana T-DNA flanking sequenc... 70 2e-009
emb|CR356727.1| Arabidopsis thaliana T-DNA flanking sequenc... 68 7e-009
emb|BX944815.1| Arabidopsis thaliana T-DNA flanking sequenc... 64 1e-007
gb|BP828625.1|BP828625 BP828625 RAFL19 Arabidopsis thaliana... 64 1e-007
gb|BZ664619.1|BZ664619 SALK_098967.49.85.x Arabidopsis thal... 60 2e-006
gb|W43471.1|W43471 22848 CD4-15 Arabidopsis thaliana cDNA c... 58 6e-006
gb|T04469.1|T04469 516 Lambda-PRL2 Arabidopsis thaliana cDN... 58 6e-006
gb|AV823050.1|AV823050 AV823050 RAFL5 Arabidopsis thaliana ... 58 6e-006
gb|AV825511.1|AV825511 AV825511 RAFL7 Arabidopsis thaliana ... 58 6e-006
gb|AV830273.1|AV830273 AV830273 RAFL9 Arabidopsis thaliana ... 58 6e-006
gb|AF162848.1|AF162848 AF162848 Arabidopsis thaliana germin... 46 0.024
gb|CF651311.1|CF651311 39-E009213w-013-001-M09-T7R MPIZ-ADI... 46 0.024
gb|CF651354.1|CF651354 26-E009213w-013-001-C07-T7R MPIZ-ADI... 46 0.024
gb|AY056435.1| Arabidopsis thaliana AT5g64840/MXK3_6 mRNA, ... 46 0.024
gb|BT000510.1| Arabidopsis thaliana ABC transporter protein... 46 0.024
dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.024
ref|NM_125882.2| Arabidopsis thaliana ATGCN5 AT5G64840 (ATG... 46 0.024
gb|BX837579.1|BX837579 BX837579 Arabidopsis thaliana Hormon... 44 0.097
gb|BP797669.1|BP797669 BP797669 RAFL14 Arabidopsis thaliana... 44 0.097
gb|BP803182.1|BP803182 BP803182 RAFL14 Arabidopsis thaliana... 44 0.097
gb|BP855355.1|BP855355 BP855355 RAFL21 Arabidopsis thaliana... 44 0.097
emb|AJ525637.1|ATH525637 Arabidopsis thaliana T-DNA flankin... 44 0.097
gb|CF651355.1|CF651355 26-E021106-013-001-C07-T7R MPIZ-ADIS... 42 0.38
gb|BP797636.1|BP797636 BP797636 RAFL14 Arabidopsis thaliana... 42 0.38
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.38
emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3... 42 0.38
ref|NM_115158.1| Arabidopsis thaliana nucleic acid binding ... 42 0.38
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.38
>gb|AY140066.1| Arabidopsis thaliana ABC transporter homolog PnATH-like protein
(At5g60790) mRNA, complete cds
Length = 2287
Score = 303 bits (153), Expect = 6e-080
Identities = 474/581 (81%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 671 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 730
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 731 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 790
Query: 811 acaatccttttgcttgatgagcccacaaaccatctagatcttgaggcttgtgtctggttg 870
||||||||||||||||||||||| || || ||| ||||| | || |||||||| ||| |
Sbjct: 791 acaatccttttgcttgatgagccgactaatcatttagatttggaagcttgtgtgtggcta 850
Query: 871 gaagagacactgaagaaatttgaccgcatacttgttgtcatatcacactcccaagatttt 930
||||||| |||||||| ||||| ||||| |||||||| |||| ||||| || |||||
Sbjct: 851 gaagagagcctgaagaattttgatcgcatccttgttgtggtatcccactcacaggatttc 910
Query: 931 ctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacacc 990
| |||||||||||||| ||||| ||||| ||||| | ||| ||||||||| |||||
Sbjct: 911 ttgaatggagtgtgtacaaacatcatccacatgcagagcaaacagctcaagtactacact 970
Query: 991 ggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcag 1050
||||||| ||||||||| || ||||| || || ||||||||||| || ||||| ||
Sbjct: 971 ggtaactttgatcagtattgccagactcgttctgaacttgaagagaaccagatgaaacaa 1030
Query: 1051 tacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcat 1110
|||| |||||||||||| |||||| || |||||||||||||||||||| || |||||
Sbjct: 1031 tacagatgggagcaggagcagatttctcacatgaaggagtacattgctcggtttggtcac 1090
Query: 1111 ggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggag 1170
||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 1091 ggttcagccaaacttgctcgtcaagcacagagtaaggagaaaacattggcaaagatggag 1150
Query: 1171 cgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagat 1230
||||||| ||||| || ||||||| ||| ||||| ||||| || ||| | ||| | |||
Sbjct: 1151 agaggtgggctcactgaaaaggttgctagagacagtgttctcgttttccgttttgctgat 1210
Query: 1231 gttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 1211 gttgggaagcttccaccgccagtgcttcagtttgttgaagt 1251
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Plus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 1490 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 1549
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 1550 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 1609
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 1610 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 1669
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 1670 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 1729
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 1730 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 1789
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 1790 atatgggtttgcgagaa 1806
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 339 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 398
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 399 ggttgaatggttgtggaaagtccactctt 427
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 98 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 147
>gb|BT000946.1| Arabidopsis thaliana clone C105151 putative ABC transporter homolog
PnATH (At5g60790) mRNA, complete cds
Length = 1819
Score = 303 bits (153), Expect = 6e-080
Identities = 474/581 (81%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 574 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 633
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 634 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 693
Query: 811 acaatccttttgcttgatgagcccacaaaccatctagatcttgaggcttgtgtctggttg 870
||||||||||||||||||||||| || || ||| ||||| | || |||||||| ||| |
Sbjct: 694 acaatccttttgcttgatgagccgactaatcatttagatttggaagcttgtgtgtggcta 753
Query: 871 gaagagacactgaagaaatttgaccgcatacttgttgtcatatcacactcccaagatttt 930
||||||| |||||||| ||||| ||||| |||||||| |||| ||||| || |||||
Sbjct: 754 gaagagagcctgaagaattttgatcgcatccttgttgtggtatcccactcacaggatttc 813
Query: 931 ctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacacc 990
| |||||||||||||| ||||| ||||| ||||| | ||| ||||||||| |||||
Sbjct: 814 ttgaatggagtgtgtacaaacatcatccacatgcagagcaaacagctcaagtactacact 873
Query: 991 ggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcag 1050
||||||| ||||||||| || ||||| || || ||||||||||| || ||||| ||
Sbjct: 874 ggtaactttgatcagtattgccagactcgttctgaacttgaagagaaccagatgaaacaa 933
Query: 1051 tacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcat 1110
|||| |||||||||||| |||||| || |||||||||||||||||||| || |||||
Sbjct: 934 tacagatgggagcaggagcagatttctcacatgaaggagtacattgctcggtttggtcac 993
Query: 1111 ggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggag 1170
||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 994 ggttcagccaaacttgctcgtcaagcacagagtaaggagaaaacattggcaaagatggag 1053
Query: 1171 cgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagat 1230
||||||| ||||| || ||||||| ||| ||||| ||||| || ||| | ||| | |||
Sbjct: 1054 agaggtgggctcactgaaaaggttgctagagacagtgttctcgttttccgttttgctgat 1113
Query: 1231 gttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 1114 gttgggaagcttccaccgccagtgcttcagtttgttgaagt 1154
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Plus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 1393 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 1452
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 1453 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 1512
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 1513 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 1572
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 1573 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 1632
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 1633 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 1692
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 1693 atatgggtttgcgagaa 1709
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 242 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 301
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 302 ggttgaatggttgtggaaagtccactctt 330
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 1 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 50
>gb|BT008363.1| Arabidopsis thaliana At5g60790 gene, complete cds
Length = 1788
Score = 303 bits (153), Expect = 6e-080
Identities = 474/581 (81%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 574 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 633
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 634 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 693
Query: 811 acaatccttttgcttgatgagcccacaaaccatctagatcttgaggcttgtgtctggttg 870
||||||||||||||||||||||| || || ||| ||||| | || |||||||| ||| |
Sbjct: 694 acaatccttttgcttgatgagccgactaatcatttagatttggaagcttgtgtgtggcta 753
Query: 871 gaagagacactgaagaaatttgaccgcatacttgttgtcatatcacactcccaagatttt 930
||||||| |||||||| ||||| ||||| |||||||| |||| ||||| || |||||
Sbjct: 754 gaagagagcctgaagaattttgatcgcatccttgttgtggtatcccactcacaggatttc 813
Query: 931 ctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacacc 990
| |||||||||||||| ||||| ||||| ||||| | ||| ||||||||| |||||
Sbjct: 814 ttgaatggagtgtgtacaaacatcatccacatgcagagcaaacagctcaagtactacact 873
Query: 991 ggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcag 1050
||||||| ||||||||| || ||||| || || ||||||||||| || ||||| ||
Sbjct: 874 ggtaactttgatcagtattgccagactcgttctgaacttgaagagaaccagatgaaacaa 933
Query: 1051 tacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcat 1110
|||| |||||||||||| |||||| || |||||||||||||||||||| || |||||
Sbjct: 934 tacagatgggagcaggagcagatttctcacatgaaggagtacattgctcggtttggtcac 993
Query: 1111 ggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggag 1170
||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 994 ggttcagccaaacttgctcgtcaagcacagagtaaggagaaaacattggcaaagatggag 1053
Query: 1171 cgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagat 1230
||||||| ||||| || ||||||| ||| ||||| ||||| || ||| | ||| | |||
Sbjct: 1054 agaggtgggctcactgaaaaggttgctagagacagtgttctcgttttccgttttgctgat 1113
Query: 1231 gttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 1114 gttgggaagcttccaccgccagtgcttcagtttgttgaagt 1154
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Plus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 1393 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 1452
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 1453 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 1512
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 1513 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 1572
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 1573 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 1632
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 1633 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 1692
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 1693 atatgggtttgcgagaa 1709
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 242 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 301
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 302 ggttgaatggttgtggaaagtccactctt 330
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 1 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 50
>gb|AY080833.1| Arabidopsis thaliana At5g60790 mRNA sequence
Length = 2343
Score = 303 bits (153), Expect = 6e-080
Identities = 474/581 (81%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 660 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 719
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 720 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 779
Query: 811 acaatccttttgcttgatgagcccacaaaccatctagatcttgaggcttgtgtctggttg 870
||||||||||||||||||||||| || || ||| ||||| | || |||||||| ||| |
Sbjct: 780 acaatccttttgcttgatgagccgactaatcatttagatttggaagcttgtgtgtggcta 839
Query: 871 gaagagacactgaagaaatttgaccgcatacttgttgtcatatcacactcccaagatttt 930
||||||| |||||||| ||||| ||||| |||||||| |||| ||||| || |||||
Sbjct: 840 gaagagagcctgaagaattttgatcgcatccttgttgtggtatcccactcacaggatttc 899
Query: 931 ctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacacc 990
| |||||||||||||| ||||| ||||| ||||| | ||| ||||||||| |||||
Sbjct: 900 ttgaatggagtgtgtacaaacatcatccacatgcagagcaaacagctcaagtactacact 959
Query: 991 ggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcag 1050
||||||| ||||||||| || ||||| || || ||||||||||| || ||||| ||
Sbjct: 960 ggtaactttgatcagtattgccagactcgttctgaacttgaagagaaccagatgaaacaa 1019
Query: 1051 tacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcat 1110
|||| |||||||||||| |||||| || |||||||||||||||||||| || |||||
Sbjct: 1020 tacagatgggagcaggagcagatttctcacatgaaggagtacattgctcggtttggtcac 1079
Query: 1111 ggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggag 1170
||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 1080 ggttcagccaaacttgctcgtcaagcacagagtaaggagaaaacattggcaaagatggag 1139
Query: 1171 cgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagat 1230
||||||| ||||| || ||||||| ||| ||||| ||||| || ||| | ||| | |||
Sbjct: 1140 agaggtgggctcactgaaaaggttgctagagacagtgttctcgttttccgttttgctgat 1199
Query: 1231 gttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 1200 gttgggaagcttccaccgccagtgcttcagtttgttgaagt 1240
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Plus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 1479 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 1538
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 1539 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 1598
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 1599 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 1658
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 1659 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 1718
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 1719 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 1778
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 1779 atatgggtttgcgagaa 1795
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 328 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 387
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 388 ggttgaatggttgtggaaagtccactctt 416
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 88 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 137
>ref|NM_125472.2| Arabidopsis thaliana ATGCN1 AT5G60790 (ATGCN1) mRNA, complete cds
Length = 2387
Score = 303 bits (153), Expect = 6e-080
Identities = 474/581 (81%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 671 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 730
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 731 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 790
Query: 811 acaatccttttgcttgatgagcccacaaaccatctagatcttgaggcttgtgtctggttg 870
||||||||||||||||||||||| || || ||| ||||| | || |||||||| ||| |
Sbjct: 791 acaatccttttgcttgatgagccgactaatcatttagatttggaagcttgtgtgtggcta 850
Query: 871 gaagagacactgaagaaatttgaccgcatacttgttgtcatatcacactcccaagatttt 930
||||||| |||||||| ||||| ||||| |||||||| |||| ||||| || |||||
Sbjct: 851 gaagagagcctgaagaattttgatcgcatccttgttgtggtatcccactcacaggatttc 910
Query: 931 ctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacacc 990
| |||||||||||||| ||||| ||||| ||||| | ||| ||||||||| |||||
Sbjct: 911 ttgaatggagtgtgtacaaacatcatccacatgcagagcaaacagctcaagtactacact 970
Query: 991 ggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcag 1050
||||||| ||||||||| || ||||| || || ||||||||||| || ||||| ||
Sbjct: 971 ggtaactttgatcagtattgccagactcgttctgaacttgaagagaaccagatgaaacaa 1030
Query: 1051 tacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcat 1110
|||| |||||||||||| |||||| || |||||||||||||||||||| || |||||
Sbjct: 1031 tacagatgggagcaggagcagatttctcacatgaaggagtacattgctcggtttggtcac 1090
Query: 1111 ggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggag 1170
||||| || || ||||||||||| || ||||| || |||||||| | ||||||||||||
Sbjct: 1091 ggttcagccaaacttgctcgtcaagcacagagtaaggagaaaacattggcaaagatggag 1150
Query: 1171 cgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagat 1230
||||||| ||||| || ||||||| ||| ||||| ||||| || ||| | ||| | |||
Sbjct: 1151 agaggtgggctcactgaaaaggttgctagagacagtgttctcgttttccgttttgctgat 1210
Query: 1231 gttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 1211 gttgggaagcttccaccgccagtgcttcagtttgttgaagt 1251
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Plus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 1490 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 1549
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 1550 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 1609
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 1610 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 1669
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 1670 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 1729
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 1730 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 1789
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 1790 atatgggtttgcgagaa 1806
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 339 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 398
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 399 ggttgaatggttgtggaaagtccactctt 427
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 98 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 147
>dbj|AB015472.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1
Length = 54632
Score = 214 bits (108), Expect = 5e-053
Identities = 339/416 (81%)
Strand = Plus / Minus
Query: 856 gcttgtgtctggttggaagagacactgaagaaatttgaccgcatacttgttgtcatatca 915
|||||||| ||| | ||||||| |||||||| ||||| ||||| |||||||| ||||
Sbjct: 20012 gcttgtgtgtggctagaagagagcctgaagaattttgatcgcatccttgttgtggtatcc 19953
Query: 916 cactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaacaagaag 975
||||| || ||||| | |||||||||||||| ||||| ||||| ||||| | ||| ||
Sbjct: 19952 cactcacaggatttcttgaatggagtgtgtacaaacatcatccacatgcagagcaaacag 19893
Query: 976 ctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatcttgaagag 1035
||||||| ||||| ||||||| ||||||||| || ||||| || || |||||||||
Sbjct: 19892 ctcaagtactacactggtaactttgatcagtattgccagactcgttctgaacttgaagag 19833
Query: 1036 aatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacatt 1095
|| || ||||| || |||| |||||||||||| |||||| || |||||||||||||||
Sbjct: 19832 aaccagatgaaacaatacagatgggagcaggagcagatttctcacatgaaggagtacatt 19773
Query: 1096 gctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaact 1155
||||| || ||||| ||||| || || ||||||||||| || ||||| || ||||||||
Sbjct: 19772 gctcggtttggtcacggttcagccaaacttgctcgtcaagcacagagtaaggagaaaaca 19713
Query: 1156 cttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtg 1215
| |||||||||||| ||||||| ||||| || ||||||| ||| ||||| ||||| ||
Sbjct: 19712 ttggcaaagatggagagaggtgggctcactgaaaaggttgctagagacagtgttctcgtt 19653
Query: 1216 ttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||| | ||| | |||||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 19652 ttccgttttgctgatgttgggaagcttccaccgccagtgcttcagtttgttgaagt 19597
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Minus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 19358 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 19299
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 19298 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 19239
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 19238 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 19179
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 19178 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 19119
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 19118 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 19059
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 19058 atatgggtttgcgagaa 19042
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 20263 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 20204
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 20203 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 20144
Query: 811 acaatccttttgcttgatgagcc 833
|||||||||||||||||||||||
Sbjct: 20143 acaatccttttgcttgatgagcc 20121
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 20595 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 20536
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 20535 ggttgaatggttgtggaaagtccactctt 20507
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 20970 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 20921
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 214 bits (108), Expect = 5e-053
Identities = 339/416 (81%)
Strand = Plus / Minus
Query: 856 gcttgtgtctggttggaagagacactgaagaaatttgaccgcatacttgttgtcatatca 915
|||||||| ||| | ||||||| |||||||| ||||| ||||| |||||||| ||||
Sbjct: 21720122 gcttgtgtgtggctagaagagagcctgaagaattttgatcgcatccttgttgtggtatcc 21720063
Query: 916 cactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaacaagaag 975
||||| || ||||| | |||||||||||||| ||||| ||||| ||||| | ||| ||
Sbjct: 21720062 cactcacaggatttcttgaatggagtgtgtacaaacatcatccacatgcagagcaaacag 21720003
Query: 976 ctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatcttgaagag 1035
||||||| ||||| ||||||| ||||||||| || ||||| || || |||||||||
Sbjct: 21720002 ctcaagtactacactggtaactttgatcagtattgccagactcgttctgaacttgaagag 21719943
Query: 1036 aatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacatt 1095
|| || ||||| || |||| |||||||||||| |||||| || |||||||||||||||
Sbjct: 21719942 aaccagatgaaacaatacagatgggagcaggagcagatttctcacatgaaggagtacatt 21719883
Query: 1096 gctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaact 1155
||||| || ||||| ||||| || || ||||||||||| || ||||| || ||||||||
Sbjct: 21719882 gctcggtttggtcacggttcagccaaacttgctcgtcaagcacagagtaaggagaaaaca 21719823
Query: 1156 cttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtg 1215
| |||||||||||| ||||||| ||||| || ||||||| ||| ||||| ||||| ||
Sbjct: 21719822 ttggcaaagatggagagaggtgggctcactgaaaaggttgctagagacagtgttctcgtt 21719763
Query: 1216 ttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||| | ||| | |||||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 21719762 ttccgttttgctgatgttgggaagcttccaccgccagtgcttcagtttgttgaagt 21719707
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Minus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 21719468 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 21719409
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 21719408 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 21719349
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 21719348 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 21719289
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 21719288 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 21719229
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 21719228 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 21719169
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 21719168 atatgggtttgcgagaa 21719152
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 21720373 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 21720314
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 21720313 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 21720254
Query: 811 acaatccttttgcttgatgagcc 833
|||||||||||||||||||||||
Sbjct: 21720253 acaatccttttgcttgatgagcc 21720231
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 21720705 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 21720646
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 21720645 ggttgaatggttgtggaaagtccactctt 21720617
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 22934064 gatgagccgacaaatcatttgga 22934042
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 21721080 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 21721031
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 214 bits (108), Expect = 5e-053
Identities = 339/416 (81%)
Strand = Plus / Minus
Query: 856 gcttgtgtctggttggaagagacactgaagaaatttgaccgcatacttgttgtcatatca 915
|||||||| ||| | ||||||| |||||||| ||||| ||||| |||||||| ||||
Sbjct: 24472035 gcttgtgtgtggctagaagagagcctgaagaattttgatcgcatccttgttgtggtatcc 24471976
Query: 916 cactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaacaagaag 975
||||| || ||||| | |||||||||||||| ||||| ||||| ||||| | ||| ||
Sbjct: 24471975 cactcacaggatttcttgaatggagtgtgtacaaacatcatccacatgcagagcaaacag 24471916
Query: 976 ctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatcttgaagag 1035
||||||| ||||| ||||||| ||||||||| || ||||| || || |||||||||
Sbjct: 24471915 ctcaagtactacactggtaactttgatcagtattgccagactcgttctgaacttgaagag 24471856
Query: 1036 aatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacatt 1095
|| || ||||| || |||| |||||||||||| |||||| || |||||||||||||||
Sbjct: 24471855 aaccagatgaaacaatacagatgggagcaggagcagatttctcacatgaaggagtacatt 24471796
Query: 1096 gctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaact 1155
||||| || ||||| ||||| || || ||||||||||| || ||||| || ||||||||
Sbjct: 24471795 gctcggtttggtcacggttcagccaaacttgctcgtcaagcacagagtaaggagaaaaca 24471736
Query: 1156 cttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtg 1215
| |||||||||||| ||||||| ||||| || ||||||| ||| ||||| ||||| ||
Sbjct: 24471735 ttggcaaagatggagagaggtgggctcactgaaaaggttgctagagacagtgttctcgtt 24471676
Query: 1216 ttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
||| | ||| | |||||||| || ||||| || || ||||| ||||||||||||||
Sbjct: 24471675 ttccgttttgctgatgttgggaagcttccaccgccagtgcttcagtttgttgaagt 24471620
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Minus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 24471381 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 24471322
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 24471321 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 24471262
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 24471261 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 24471202
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 24471201 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 24471142
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 24471141 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 24471082
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 24471081 atatgggtttgcgagaa 24471065
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 24472286 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 24472227
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcactgtttatgaatcca 810
||||||||||| |||||| | ||||| ||||| || ||||||||||| || || | ||
Sbjct: 24472226 gatttctctggtggttggaggatgagaattgcattggcaagagcactcttcattatgccg 24472167
Query: 811 acaatccttttgcttgatgagcc 833
|||||||||||||||||||||||
Sbjct: 24472166 acaatccttttgcttgatgagcc 24472144
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 24472618 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 24472559
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 24472558 ggttgaatggttgtggaaagtccactctt 24472530
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 25935977 gatgagccgacaaatcatttgga 25935955
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 24472993 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 24472944
>gb|CL504216.1|CL504216 SAIL_734_D11.v3 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_734_D11.v3, DNA sequence
Length = 934
Score = 153 bits (77), Expect = 1e-034
Identities = 257/317 (81%)
Strand = Plus / Minus
Query: 1510 tacatgatgaaggaataccctgggaccgaagaagagaagatgcgagctgctgttggcagg 1569
|||||||||| ||| | ||| || || ||||| ||||| ||| ||||||| |||| |||
Sbjct: 498 tacatgatgagggagttcccgggtactgaagaggagaaaatgagagctgcgattggtagg 439
Query: 1570 tttggcctatcaggaaaggcgcaggtgatgccaatgaggaatctttctgatgggcaaagg 1629
||||| ||| | || ||||| || ||||||||||||| |||||| ||||| || ||||||
Sbjct: 438 tttggtctaactggtaaggctcaagtgatgccaatgaagaatctatctgacggacaaagg 379
Query: 1630 agccgtgtcatctttgcatggttggcatataggcagccgcaactgctactgctcgatgag 1689
||| | || |||||||| ||||| || |||| |||||| | |||| || || ||||||
Sbjct: 378 agcagagtgatctttgcgtggttagcttataagcagcctaacatgcttcttcttgatgag 319
Query: 1690 ccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaatgagtgg 1749
|| || || |||||||| || ||||| || ||||| || || |||||| |||||||||||
Sbjct: 318 cctactaaccatttggatatcgagacaatcgactcgcttgctgaggcattgaatgagtgg 259
Query: 1750 gatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgctcaagag 1809
|||||||||||||| |||| || || || |||||| |||||||||| || ||||| |||
Sbjct: 258 gatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggctcatgag 199
Query: 1810 atttgggtgtgtgagaa 1826
|| ||||| || |||||
Sbjct: 198 atatgggtttgcgagaa 182
>gb|H37746.1|H37746 15875 Lambda-PRL2 Arabidopsis thaliana cDNA clone 186D18T7, mRNA
sequence
Length = 484
Score = 125 bits (63), Expect = 3e-026
Identities = 232/290 (80%)
Strand = Plus / Plus
Query: 1537 gaagaagagaagatgcgagctgctgttggcaggtttggcctatcaggaaaggcgcaggtg 1596
||||| ||||| ||| ||||||| |||| |||||||| ||| | || ||||| || ||
Sbjct: 11 gaagaggagaaaatgagagctgcgattggtaggtttggtctaactggtaaggctcaagtn 70
Query: 1597 atgccaatgaggaatctttctgatgggcaaaggagccgtgtcatctttgcatggttggca 1656
|||||||| | |||||| ||| | || ||||||||| | || |||||||| ||||| ||
Sbjct: 71 atgccaatnaagaatctatctnacggacaaaggagcagagtgatctttgcgtggttagct 130
Query: 1657 tataggcagccgcaactgctactgctcgatgagccgacaaatcatttggacattgagacc 1716
|||| |||||| | | || || || |||||||| || || |||||||| || |||||
Sbjct: 131 tataagcagcctaacatncttctncttgatgagcctactaaccatttggatatcgagaca 190
Query: 1717 attgactccctggcggaggcactgaatgagtgggatggtggtttggtcttggtgagccat 1776
|| ||||| || || |||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 191 atcgactcgcttgctgaggcattgaatgagtgggatggtggtttggttctggttagtcac 250
Query: 1777 gatttcaggctgatcaaccaggttgctcaagagatttgggtgtgtgagaa 1826
|| |||||| |||||||||| || ||||| ||||| ||||| || |||||
Sbjct: 251 gacttcaggttgatcaaccaagtggctcatgagatatgggtttgcgagaa 300
>gb|AI995098.1|AI995098 701501783 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA
clone 701501783, mRNA sequence
Length = 542
Score = 123 bits (62), Expect = 1e-025
Identities = 233/290 (80%)
Strand = Plus / Plus
Query: 1537 gaagaagagaagatgcgagctgctgttggcaggtttggcctatcaggaaaggcgcaggtg 1596
||||| ||||| ||| ||||||| |||| |||||||| ||| || || || || |||
Sbjct: 11 gaagaggagaaaatgagagctgcgattggtaggtttggtctaagtggtaatgctcaagtg 70
Query: 1597 atgccaatgaggaatctttctgatgggcaaaggagccgtgtcatctttgcatggttggca 1656
|||||||||| |||||| ||| | || ||||||||| | || |||||||| ||||| ||
Sbjct: 71 atgccaatgaagaatctatcttacggacaaaggagcagagtgatctttgcgtggttagct 130
Query: 1657 tataggcagccgcaactgctactgctcgatgagccgacaaatcatttggacattgagacc 1716
|||| |||||| | |||| || || |||||||| || || |||||||| || |||||
Sbjct: 131 tataagcagcctaacatgcttcttcttgatgagcctactaaccatttggatatcgagaca 190
Query: 1717 attgactccctggcggaggcactgaatgagtgggatggtggtttggtcttggtgagccat 1776
|| ||||| || || |||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 191 atcgactcgcttgctgaggcattgaatgagtgggatggtggtttggttctggttagtcac 250
Query: 1777 gatttcaggctgatcaaccaggttgctcaagagatttgggtgtgtgagaa 1826
|| |||||| |||||||||| || ||||| ||||| ||||| || |||||
Sbjct: 251 gacttcaggttgatcaaccaagtggctcatgagatatgggtttgcgagaa 300
>gb|AV530392.1|AV530392 AV530392 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB003a03F 3', mRNA sequence
Length = 521
Score = 85.7 bits (43), Expect = 3e-014
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 1684 gatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcactgaat 1743
|||||||| || || |||||||| || ||| | || ||||| || || |||||| |||||
Sbjct: 521 gatgagcctactaaccatttggatatcgagtcaatcgactcgcttgctgaggcattgaat 462
Query: 1744 gagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccaggttgct 1803
|||||||||||||||||||| |||| || || || |||||| |||||||||| || |||
Sbjct: 461 gagtgggatggtggtttggttctggttagtcacgacttcaggttgatcaaccaagtggct 402
Query: 1804 caagagatttgggtgtgtgagaa 1826
|| ||||| ||||| || |||||
Sbjct: 401 catgagatatgggtttgcgagaa 379
>emb|CR402275.1| Arabidopsis thaliana T-DNA flanking sequence GK-853F08-025756,
genomic survey sequence
Length = 213
Score = 77.8 bits (39), Expect = 7e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || ||||| || |||
Sbjct: 127 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaagacaaaa 68
Query: 751 gatttctctggaggttggcgtatgaggattgctttagcaagagcact 797
||||||||||| |||||| | ||||| ||||| || |||||||||||
Sbjct: 67 gatttctctggtggttggaggatgagaattgcattcgcaagagcact 21
>gb|W43226.1|W43226 22605 Lambda-PRL2 Arabidopsis thaliana cDNA clone 248K13T7, mRNA
sequence
Length = 563
Score = 75.8 bits (38), Expect = 3e-011
Identities = 110/134 (82%)
Strand = Plus / Plus
Query: 1138 cagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgtt 1197
||||| || |||||||| | |||||||||||| ||||||| ||||| || ||||||| |
Sbjct: 1 cagagtaaggagaaaacattggcaaagatggagagaggtgggctcactgaaaaggttgct 60
Query: 1198 agggacagagttctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctg 1257
|| ||||| ||||| || ||| | ||| | |||||||| || ||||| || || |||||
Sbjct: 61 agagacagtgttctcgttttccgttttgctgatgttgggaagcttccaccgccagtgctt 120
Query: 1258 cagtttgttgaagt 1271
||||||||||||||
Sbjct: 121 cagtttgttgaagt 134
>emb|BX944814.1| Arabidopsis thaliana T-DNA flanking sequence GK-702G10-025033,
genomic survey sequence
Length = 153
Score = 69.9 bits (35), Expect = 2e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 1534 accgaagaagagaagatgcgagctgctgttggcaggtttggcctatcaggaaaggcgcag 1593
|||||||| ||||| ||| ||||||| |||| |||||||| ||| | || ||||| ||
Sbjct: 109 accgaagaggagaaaatgagagctgcgattggtaggtttggtctaactggtaaggctcaa 50
Query: 1594 gtgatgccaatgaggaatctttctgatgggcaaaggagc 1632
||||||||||||| |||||| ||||| || |||||||||
Sbjct: 49 gtgatgccaatgaagaatctatctgacggacaaaggagc 11
>emb|CR356727.1| Arabidopsis thaliana T-DNA flanking sequence GK-702G10-025184,
genomic survey sequence
Length = 138
Score = 67.9 bits (34), Expect = 7e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 1537 gaagaagagaagatgcgagctgctgttggcaggtttggcctatcaggaaaggcgcaggtg 1596
||||| ||||| ||| ||||||| |||| |||||||| ||| | || ||||| || |||
Sbjct: 134 gaagaggagaaaatgagagctgcgattggtaggtttggtctaactggtaaggctcaagtg 75
Query: 1597 atgccaatgaggaatctttctgatgggcaaaggagccgtgtcatctttgc 1646
|||||||||| |||||| ||||| || ||||||||| | || ||||||||
Sbjct: 74 atgccaatgaagaatctatctgacggacaaaggagcagagtgatctttgc 25
>emb|BX944815.1| Arabidopsis thaliana T-DNA flanking sequence GK-702G10-025104,
genomic survey sequence
Length = 134
Score = 63.9 bits (32), Expect = 1e-007
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 1537 gaagaagagaagatgcgagctgctgttggcaggtttggcctatcaggaaaggcgcaggtg 1596
||||| ||||| ||| ||||||| |||| |||||||| ||| | || ||||| || |||
Sbjct: 130 gaagaggagaaaatgagagctgcgattggtaggtttggtctaactggtaaggctcaagtg 71
Query: 1597 atgccaatgaggaatctttctgatgggcaaaggagc 1632
|||||||||| |||||| ||||| || |||||||||
Sbjct: 70 atgccaatgaagaatctatctgacggacaaaggagc 35
>gb|BP828625.1|BP828625 BP828625 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-79-H06 5',
mRNA sequence
Length = 364
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 691 gctgctgaaattttatttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaa 750
|||||||||||| | ||||| || ||||| ||||| ||||||| || |||| || |||
Sbjct: 254 gctgctgaaattctgtttggacttggtttcgacaaggaaatgcaggcgaagaggacaaaa 313
Query: 751 gatttctctggaggttggcgtatgaggattgc 782
||||||||||| |||||||| ||||| |||||
Sbjct: 314 gatttctctggtggttggcggatgagaattgc 345
>gb|BZ664619.1|BZ664619 SALK_098967.49.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_098967.49.85.x,
DNA sequence
Length = 267
Score = 60.0 bits (30), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 1699 catttggacattgagaccattgactccctggcggaggcactgaatgagtgggatggtggt 1758
|||||||| || ||||| || |||| |||| | ||||| ||||||||||||||||||||
Sbjct: 232 catttggatatcgagacaatcgactngctggtgcaggcattgaatgagtgggatggtggt 173
Query: 1759 ttggt 1763
|||||
Sbjct: 172 ttggt 168
>gb|W43471.1|W43471 22848 CD4-15 Arabidopsis thaliana cDNA clone G12C1T7, mRNA sequence
Length = 533
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 276 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 335
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 336 ggttgaatggttgtggaaagtccactctt 364
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 35 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 84
>gb|T04469.1|T04469 516 Lambda-PRL2 Arabidopsis thaliana cDNA clone 35E10T7, mRNA
sequence
Length = 400
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 43 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 102
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 103 ggttgaatggttgtggaaagtccactctt 131
>gb|AV823050.1|AV823050 AV823050 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-L07 5',
mRNA sequence
Length = 659
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 329 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 388
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 389 ggttgaatggttgtggaaagtccactctt 417
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 88 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 137
>gb|AV825511.1|AV825511 AV825511 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-10-I02 5',
mRNA sequence
Length = 609
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 328 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 387
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 388 ggttgaatggttgtggaaagtccactctt 416
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 88 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 137
>gb|AV830273.1|AV830273 AV830273 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-66-D05 5',
mRNA sequence
Length = 576
Score = 58.0 bits (29), Expect = 6e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 359 atgaccttattgtggattctgatttggagctgaactacgggaggcgatacggtttgcttg 418
||||||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||
Sbjct: 339 atgaccttattgttgattcaatgttggagcttaactatggaaggcgttatggtctccttg 398
Query: 419 ggttgaatggctgtggaaaatctactctt 447
|||||||||| |||||||| || ||||||
Sbjct: 399 ggttgaatggttgtggaaagtccactctt 427
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 98 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 147
>gb|AF162848.1|AF162848 AF162848 Arabidopsis thaliana germinating seeds Arabidopsis thaliana
cDNA clone AtGER16 similar to ABC transporter, mRNA
sequence
Length = 579
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 224 gatgagccgacaaatcatttgga 246
>gb|CF651311.1|CF651311 39-E009213w-013-001-M09-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770M091Q 5-PRIME, mRNA sequence
Length = 935
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 722 gatgagccgacaaatcatttgga 744
>gb|CF651354.1|CF651354 26-E009213w-013-001-C07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C071Q 5-PRIME, mRNA sequence
Length = 943
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 722 gatgagccgacaaatcatttgga 744
>gb|AY056435.1| Arabidopsis thaliana AT5g64840/MXK3_6 mRNA, complete cds
Length = 2322
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 964 gatgagccgacaaatcatttgga 986
>gb|BT000510.1| Arabidopsis thaliana ABC transporter protein 1-like protein
(At5g64840/MXK3_6) mRNA, complete cds
Length = 2079
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 850 gatgagccgacaaatcatttgga 872
>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3
Length = 81494
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 16086 gatgagccgacaaatcatttgga 16064
>ref|NM_125882.2| Arabidopsis thaliana ATGCN5 AT5G64840 (ATGCN5) mRNA, complete cds
Length = 2429
Score = 46.1 bits (23), Expect = 0.024
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttgga 1706
|||||||||||||||||||||||
Sbjct: 967 gatgagccgacaaatcatttgga 989
>gb|BX837579.1|BX837579 BX837579 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH94ZC04 5PRIM, mRNA
sequence
Length = 771
Score = 44.1 bits (22), Expect = 0.097
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1662 gcagccgcaactgctactgctc 1683
||||||||||||||||||||||
Sbjct: 103 gcagccgcaactgctactgctc 82
>gb|BP797669.1|BP797669 BP797669 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-E03 5',
mRNA sequence
Length = 376
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 80 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 129
>gb|BP803182.1|BP803182 BP803182 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-27-P18 5',
mRNA sequence
Length = 375
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 97 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 146
>gb|BP855355.1|BP855355 BP855355 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-26-F24 5',
mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 97 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 146
>emb|AJ525637.1|ATH525637 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
101H10
Length = 494
Score = 44.1 bits (22), Expect = 0.097
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaaggccgctgc 167
|||||||| || || |||||||||||||| || |||||||| || |||||
Sbjct: 291 atggtgtctgacgctagcaagaagaaggcagctcagaagaaagctgctgc 340
>gb|CF651355.1|CF651355 26-E021106-013-001-C07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C071Q 5-PRIME, mRNA sequence
Length = 766
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1684 gatgagccgacaaatcatttg 1704
|||||||||||||||||||||
Sbjct: 688 gatgagccgacaaatcatttg 708
>gb|BP797636.1|BP797636 BP797636 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-C02 5',
mRNA sequence
Length = 371
Score = 42.1 bits (21), Expect = 0.38
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 118 atggtgtcggatgccagcaagaagaaggccgcccagaagaa 158
|||||||| || || |||||||||||||| || ||||||||
Sbjct: 97 atggtgtctgaggctagcaagaagaaggcagctcagaagaa 137
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 772 atgaggattgctttagcaaga 792
|||||||||||||||||||||
Sbjct: 19610364 atgaggattgctttagcaaga 19610344
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
Length = 99814
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 772 atgaggattgctttagcaaga 792
|||||||||||||||||||||
Sbjct: 70293 atgaggattgctttagcaaga 70273
>ref|NM_115158.1| Arabidopsis thaliana nucleic acid binding AT3G52980 mRNA, complete
cds
Length = 1146
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 772 atgaggattgctttagcaaga 792
|||||||||||||||||||||
Sbjct: 1097 atgaggattgctttagcaaga 1077
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 772 atgaggattgctttagcaaga 792
|||||||||||||||||||||
Sbjct: 19657891 atgaggattgctttagcaaga 19657871
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,214,075
Number of Sequences: 1013581
Number of extensions: 1214075
Number of successful extensions: 97899
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95408
Number of HSP's gapped (non-prelim): 2468
length of query: 2083
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2062
effective length of database: 887,655,671
effective search space: 1830345993602
effective search space used: 1830345993602
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)