BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AB021175.2.1
         (1225 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR403417.1|  Arabidopsis thaliana T-DNA flanking sequenc...    44   0.057
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    44   0.057
emb|AL353818.1|ATF14L2  Arabidopsis thaliana DNA chromosome ...    44   0.057
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    44   0.057
gb|BP569473.1|BP569473  BP569473 RAFL14 Arabidopsis thaliana...    42   0.22 

>emb|CR403417.1| Arabidopsis thaliana T-DNA flanking sequence GK-863B12-025978,
            genomic survey sequence
          Length = 342

 Score = 44.1 bits (22), Expect = 0.057
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1200 ttgaaattatatattatatatt 1221
            ||||||||||||||||||||||
Sbjct: 232  ttgaaattatatattatatatt 253



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 44.1 bits (22), Expect = 0.057
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 1200     ttgaaattatatattatatatt 1221
                ||||||||||||||||||||||
Sbjct: 16094093 ttgaaattatatattatatatt 16094114



>emb|AL353818.1|ATF14L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F14L2
          Length = 107027

 Score = 44.1 bits (22), Expect = 0.057
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1200  ttgaaattatatattatatatt 1221
             ||||||||||||||||||||||
Sbjct: 61388 ttgaaattatatattatatatt 61409



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 44.1 bits (22), Expect = 0.057
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 1200     ttgaaattatatattatatatt 1221
                ||||||||||||||||||||||
Sbjct: 16141040 ttgaaattatatattatatatt 16141061



>gb|BP569473.1|BP569473 BP569473 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-67-D06 3',
            mRNA sequence
          Length = 431

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1203 aaattatatattatatattca 1223
            |||||||||||||||||||||
Sbjct: 54   aaattatatattatatattca 74



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 432,481
Number of Sequences: 1013581
Number of extensions: 432481
Number of successful extensions: 35676
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35301
Number of HSP's gapped (non-prelim): 375
length of query: 1225
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1205
effective length of database: 888,669,252
effective search space: 1070846448660
effective search space used: 1070846448660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)