BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX840060.1|BX840060 BX840060 Arabidopsis thaliana Hormon... 46 0.008
gb|AV540435.1|AV540435 AV540435 Arabidopsis thaliana roots ... 46 0.008
emb|BX824196.1|CNS0A6W7 Arabidopsis thaliana Full-length cD... 46 0.008
dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.008
ref|NM_112703.3| Arabidopsis thaliana unknown protein AT3G1... 46 0.008
ref|NM_001035644.1| Arabidopsis thaliana unknown protein AT... 46 0.008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.008
>gb|BX840060.1|BX840060 BX840060 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH65ZB10 5PRIM,
mRNA sequence
Length = 1028
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 797 gcgtataggatggtgaagagctc 775
>gb|AV540435.1|AV540435 AV540435 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ150b12F 3', mRNA sequence
Length = 562
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 523 gcgtataggatggtgaagagctc 545
>emb|BX824196.1|CNS0A6W7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH29ZF10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1232
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 796 gcgtataggatggtgaagagctc 774
>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8
Length = 76816
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 64000 gcgtataggatggtgaagagctc 64022
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 6209305 gcgtataggatggtgaagagctc 6209327
>ref|NM_112703.3| Arabidopsis thaliana unknown protein AT3G18200 transcript variant
AT3G18200.1 mRNA, complete cds
Length = 1318
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 796 gcgtataggatggtgaagagctc 774
>ref|NM_001035644.1| Arabidopsis thaliana unknown protein AT3G18200 transcript variant
AT3G18200.2 mRNA, complete cds
Length = 1317
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 795 gcgtataggatggtgaagagctc 773
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 595 gcgtataggatggtgaagagctc 617
|||||||||||||||||||||||
Sbjct: 6235008 gcgtataggatggtgaagagctc 6235030
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,089
Number of Sequences: 1013581
Number of extensions: 232089
Number of successful extensions: 16413
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16248
Number of HSP's gapped (non-prelim): 165
length of query: 691
length of database: 908,940,872
effective HSP length: 20
effective length of query: 671
effective length of database: 888,669,252
effective search space: 596297068092
effective search space used: 596297068092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)