BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL477821.1|CL477821 SAIL_27_G08.v3 SAIL Collection Arabi... 44 0.034
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.034
emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome... 44 0.034
emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosom... 44 0.034
ref|NM_120066.1| Arabidopsis thaliana unknown protein AT4G3... 44 0.034
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.034
gb|CB253098.1|CB253098 10-E010699-019-002-D04-T7R MPIZ-ADIS... 42 0.14
>gb|CL477821.1|CL477821 SAIL_27_G08.v3 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_27_G08.v3, DNA sequence
Length = 715
Score = 44.1 bits (22), Expect = 0.034
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 ccccagcccccgcgccgcccaagacc 177
|||||||||||||||||||| |||||
Sbjct: 622 ccccagcccccgcgccgccccagacc 647
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ggagagcaagaagaagaagaag 687
||||||||||||||||||||||
Sbjct: 14116905 ggagagcaagaagaagaagaag 14116926
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project)
Length = 100469
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ggagagcaagaagaagaagaag 687
||||||||||||||||||||||
Sbjct: 80257 ggagagcaagaagaagaagaag 80278
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
Length = 198987
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ggagagcaagaagaagaagaag 687
||||||||||||||||||||||
Sbjct: 118267 ggagagcaagaagaagaagaag 118288
>ref|NM_120066.1| Arabidopsis thaliana unknown protein AT4G39060 mRNA, complete cds
Length = 1128
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ggagagcaagaagaagaagaag 687
||||||||||||||||||||||
Sbjct: 606 ggagagcaagaagaagaagaag 627
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 666 ggagagcaagaagaagaagaag 687
||||||||||||||||||||||
Sbjct: 18204106 ggagagcaagaagaagaagaag 18204127
>gb|CB253098.1|CB253098 10-E010699-019-002-D04-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D042Q 5-PRIME, mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 667 gagagcaagaagaagaagaag 687
|||||||||||||||||||||
Sbjct: 21 gagagcaagaagaagaagaag 1
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 457,194
Number of Sequences: 1013581
Number of extensions: 457194
Number of successful extensions: 122586
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121424
Number of HSP's gapped (non-prelim): 1156
length of query: 753
length of database: 908,940,872
effective HSP length: 20
effective length of query: 733
effective length of database: 888,669,252
effective search space: 651394561716
effective search space used: 651394561716
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)