BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN604613.1|DN604613 JCAt2g36890 Arabidopsis Gateway cDNA... 48 0.003
gb|DR749769.1|DR749769 92-L022342-065-009-D12-SeLA MPIZ-ADI... 48 0.003
gb|DR749770.1|DR749770 92-L022343-065-009-D12-SeLB MPIZ-ADI... 48 0.003
gb|AF062880.1|AF062880 Arabidopsis thaliana putative transc... 48 0.003
emb|AX506289.1| Sequence 984 from Patent WO0216655 48 0.003
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 48 0.003
gb|AY519577.1| Arabidopsis thaliana MYB transcription facto... 48 0.003
emb|BX820586.1|CNS0A8Q4 Arabidopsis thaliana Full-length cD... 48 0.003
ref|NM_129245.2| Arabidopsis thaliana DNA binding / transcr... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana ... 44 0.047
gb|CB252290.1|CB252290 29-E018438-019-009-I08-T7R MPIZ-ADIS... 44 0.047
gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA... 44 0.047
gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADI... 44 0.047
gb|DR750661.1|DR750661 45-L022343-065-009-E06-SeLB MPIZ-ADI... 44 0.047
gb|AF249309.1|AF249309 Arabidopsis thaliana putative transc... 44 0.047
gb|BV008056.1| MASC_STS15898 Arabidopsis thaliana (Guecking... 44 0.047
gb|BV008057.1| MASC_STS15904 Arabidopsis thaliana (Koncheze... 44 0.047
gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome II... 44 0.047
gb|AY519581.1| Arabidopsis thaliana MYB transcription facto... 44 0.047
emb|BX815211.1|CNS0AAGG Arabidopsis thaliana Full-length cD... 44 0.047
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.047
ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding /... 44 0.047
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.047
gb|BZ286920.1|BZ286920 SALK_020256.43.10.x Arabidopsis thal... 42 0.19
gb|BP562693.1|BP562693 BP562693 RAFL14 Arabidopsis thaliana... 42 0.19
gb|DN604581.1|DN604581 JCAt5g61420 Arabidopsis Gateway cDNA... 42 0.19
gb|DR751443.1|DR751443 06-L021127-065-005-F01-SeLA MPIZ-ADI... 42 0.19
gb|DR751504.1|DR751504 03-L021127-065-005-C01-SeLA MPIZ-ADI... 42 0.19
gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-bi... 42 0.19
gb|AF175998.1|AF175998 Arabidopsis thaliana putative transc... 42 0.19
gb|AY008379.1| Arabidopsis thaliana putative transcription ... 42 0.19
emb|AX506861.1| Sequence 1556 from Patent WO0216655 42 0.19
emb|AX507651.1| Sequence 2346 from Patent WO0216655 42 0.19
emb|AX651705.1| Sequence 535 from Patent WO03000898 42 0.19
emb|AX651823.1| Sequence 679 from Patent WO03000898 42 0.19
gb|AC020665.6|AC020665 Arabidopsis thaliana chromosome 1 BA... 42 0.19
gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I... 42 0.19
gb|AY519567.1| Arabidopsis thaliana MYB transcription facto... 42 0.19
gb|AY519573.1| Arabidopsis thaliana MYB transcription facto... 42 0.19
gb|AY519643.1| Arabidopsis thaliana MYB transcription facto... 42 0.19
emb|BX830516.1|CNS0A289 Arabidopsis thaliana Full-length cD... 42 0.19
emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cD... 42 0.19
dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.19
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.19
emb|CS137944.1| Sequence 915 from Patent WO2005047516 42 0.19
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.19
ref|NM_105309.3| Arabidopsis thaliana MYB114; DNA binding /... 42 0.19
ref|NM_180910.1| Arabidopsis thaliana MYB28; DNA binding / ... 42 0.19
ref|NM_125535.2| Arabidopsis thaliana MYB28; DNA binding / ... 42 0.19
ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / t... 42 0.19
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.19
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.19
>gb|DN604613.1|DN604613 JCAt2g36890 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 392
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 309 tcaagaactattggaacactaagctcaagaag 340
>gb|DR749769.1|DR749769 92-L022342-065-009-D12-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D12, mRNA sequence
Length = 886
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 387 tcaagaactattggaacactaagctcaagaag 418
>gb|DR749770.1|DR749770 92-L022343-065-009-D12-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-D12, mRNA sequence
Length = 884
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 677 tcaagaactattggaacactaagctcaagaag 646
>gb|AF062880.1|AF062880 Arabidopsis thaliana putative transcription factor (MYB38) mRNA,
partial cds
Length = 764
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 152 tcaagaactattggaacactaagctcaagaag 183
>emb|AX506289.1| Sequence 984 from Patent WO0216655
Length = 897
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 314 tcaagaactattggaacactaagctcaagaag 345
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
sequence
Length = 134151
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 47841 tcaagaactattggaacactaagctcaagaag 47872
>gb|AY519577.1| Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA,
complete cds
Length = 897
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 314 tcaagaactattggaacactaagctcaagaag 345
>emb|BX820586.1|CNS0A8Q4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH50ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1480
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 862 tcaagaactattggaacactaagctcaagaag 893
>ref|NM_129245.2| Arabidopsis thaliana DNA binding / transcription factor AT2G36890
mRNA, complete cds
Length = 971
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 356 tcaagaactattggaacactaagctcaagaag 387
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacaccaagctcaagaag 201
|||||||||| |||||||| ||||||||||||
Sbjct: 15493741 tcaagaactattggaacactaagctcaagaag 15493772
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 7263488 tgcggtaaaagctgccgtcttcggtggattaactatctccg 7263448
>gb|CK119118.1|CK119118 214c05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C05214
5-PRIME, mRNA sequence
Length = 784
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 400 ggacagacaacgagatcaagaactactggaacac 433
>gb|CB252290.1|CB252290 29-E018438-019-009-I08-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768I089Q 5-PRIME, mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.047
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 242 cgccgccgccaccaccagctcc 263
||||||||||||||||||||||
Sbjct: 388 cgccgccgccaccaccagctcc 409
>gb|DN604579.1|DN604579 JCAt3g01140 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 637
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 291 ggacagacaacgagatcaagaactactggaacac 324
>gb|DR750660.1|DR750660 45-L022342-065-009-E06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E06, mRNA sequence
Length = 879
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 368 ggacagacaacgagatcaagaactactggaacac 401
>gb|DR750661.1|DR750661 45-L022343-065-009-E06-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 009-E06, mRNA sequence
Length = 865
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 833 ggacagacaacgagatcaagaactactggaacac 800
>gb|AF249309.1|AF249309 Arabidopsis thaliana putative transcription factor (MYB106) mRNA,
complete cds
Length = 1038
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 296 ggacagacaacgagatcaagaactactggaacac 329
>gb|BV008056.1| MASC_STS15898 Arabidopsis thaliana (Gueckingen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 653
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 392 ggacagacaacgagatcaagaactactggaacac 425
>gb|BV008057.1| MASC_STS15904 Arabidopsis thaliana (Konchezero accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 496
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 369 ggacagacaacgagatcaagaactactggaacac 402
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
complete sequence
Length = 93735
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 49727 ggacagacaacgagatcaagaactactggaacac 49760
>gb|AY519581.1| Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA,
complete cds
Length = 1038
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 296 ggacagacaacgagatcaagaactactggaacac 329
>emb|BX815211.1|CNS0AAGG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS42ZA11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1567
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 710 ggacagacaacgagatcaagaactactggaacac 677
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 53163 ggacagacaacgagatcaagaactactggaacac 53196
>ref|NM_110979.2| Arabidopsis thaliana MYB106; DNA binding / transcription factor
AT3G01140 (MYB106) mRNA, complete cds
Length = 1543
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 578 ggacagacaacgagatcaagaactactggaacac 611
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.047
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
|||| |||||||| |||||||||||||||||||
Sbjct: 47445 ggacagacaacgagatcaagaactactggaacac 47412
>gb|BZ286920.1|BZ286920 SALK_020256.43.10.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_020256.43.10.x,
DNA sequence
Length = 98
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 1 tgcggtaaaagctgccgtcttcggtggattaactatctccg 41
>gb|BP562693.1|BP562693 BP562693 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-13-M20 5',
mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 176 tgcggtaaaagctgccgtcttcggtggattaactatctccg 216
>gb|DN604581.1|DN604581 JCAt5g61420 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 296 gacaacgagatcaagaactactggaacac 324
>gb|DR751443.1|DR751443 06-L021127-065-005-F01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-F01, mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 372 gacaacgagatcaagaactactggaacac 400
>gb|DR751504.1|DR751504 03-L021127-065-005-C01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-C01, mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 232 tgcggtaaaagctgccgtcttcggtggattaactatctccg 272
>gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding protein mRNA, complete
cds
Length = 844
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 156 tgcggtaaaagctgccgtcttcggtggattaactatctccg 196
>gb|AF175998.1|AF175998 Arabidopsis thaliana putative transcription factor (MYB28) mRNA,
complete cds
Length = 1101
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaacac 329
>gb|AY008379.1| Arabidopsis thaliana putative transcription factor MYB114 mRNA,
complete cds
Length = 420
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 gtcaagaactactggaacacc 189
|||||||||||||||||||||
Sbjct: 298 gtcaagaactactggaacacc 318
>emb|AX506861.1| Sequence 1556 from Patent WO0216655
Length = 1101
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaacac 329
>emb|AX507651.1| Sequence 2346 from Patent WO0216655
Length = 810
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 145 tgcggtaaaagctgccgtcttcggtggattaactatctccg 185
>emb|AX651705.1| Sequence 535 from Patent WO03000898
Length = 810
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 145 tgcggtaaaagctgccgtcttcggtggattaactatctccg 185
>emb|AX651823.1| Sequence 679 from Patent WO03000898
Length = 1100
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaacac 329
>gb|AC020665.6|AC020665 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete
sequence
Length = 85702
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 gtcaagaactactggaacacc 189
|||||||||||||||||||||
Sbjct: 60015 gtcaagaactactggaacacc 60035
>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
sequence
Length = 112792
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 60793 tgcggtaaaagctgccgtcttcggtggattaactatctccg 60753
>gb|AY519567.1| Arabidopsis thaliana MYB transcription factor (At1g66380) mRNA,
complete cds
Length = 420
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 gtcaagaactactggaacacc 189
|||||||||||||||||||||
Sbjct: 298 gtcaagaactactggaacacc 318
>gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At2g16720) mRNA,
complete cds
Length = 810
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 145 tgcggtaaaagctgccgtcttcggtggattaactatctccg 185
>gb|AY519643.1| Arabidopsis thaliana MYB transcription factor (At5g61420) mRNA,
complete cds
Length = 1101
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaacac 329
>emb|BX830516.1|CNS0A289 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB88ZE08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1710
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 583 gacaacgagatcaagaactactggaacac 611
>emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL89ZH12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 956
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 148 tgcggtaaaagctgccgtcttcggtggattaactatctccg 188
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
Length = 80376
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 60833 gacaacgagatcaagaactactggaacac 60805
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 21925588 gacaacgagatcaagaactactggaacac 21925560
>emb|CS137944.1| Sequence 915 from Patent WO2005047516
Length = 891
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccg 44
|||||||| |||||||||||||| ||| | ||||| |||||
Sbjct: 174 tgcggtaaaagctgccgtcttcggtggattaactatctccg 214
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 gtcaagaactactggaacacc 189
|||||||||||||||||||||
Sbjct: 8999682 gtcaagaactactggaacacc 8999702
>ref|NM_105309.3| Arabidopsis thaliana MYB114; DNA binding / transcription factor
AT1G66380 (MYB114) mRNA, complete cds
Length = 420
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 gtcaagaactactggaacacc 189
|||||||||||||||||||||
Sbjct: 298 gtcaagaactactggaacacc 318
>ref|NM_180910.1| Arabidopsis thaliana MYB28; DNA binding / transcription factor
AT5G61420 (MYB28) transcript variant AT5G61420.1 mRNA,
complete cds
Length = 1805
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 681 gacaacgagatcaagaactactggaacac 709
>ref|NM_125535.2| Arabidopsis thaliana MYB28; DNA binding / transcription factor
AT5G61420 (MYB28) transcript variant AT5G61420.2 mRNA,
complete cds
Length = 1425
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 301 gacaacgagatcaagaactactggaacac 329
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 349,869
Number of Sequences: 1013581
Number of extensions: 349869
Number of successful extensions: 29885
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28758
Number of HSP's gapped (non-prelim): 1127
length of query: 1031
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1011
effective length of database: 888,669,252
effective search space: 898444613772
effective search space used: 898444613772
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)